TCONS_00054360-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054360-protein
Unique NameTCONS_00054360-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054360-protein ID=TCONS_00054360-protein|Name=TCONS_00054360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MDPSNPQIITHVQKSLNYTLFDAKFVPRSAKFVCVGSKANGSGVIQMYEL
THNEMKGNVNLLKDLEKSKSFKCCTFGASSLKTRFLATGDFDGKLAIWDL
EKPSLPVYSTKAHKEIINGIDGIGGLGIGEGAPELVTCSRDGSVKVWDPR
QKDIPVANMEASNQDMKRDCWCVAFGHSYNESERIVCAGYDNGDIKMFDL
RNMSLRWETHVKNGVCGLEFDRKDIVMNKLVATTLESKLHVFDLRTHHPN
KGYSSITQKAHDSTIWSVKHLPQNRDIFMTTGGVGSLNLWKYSYPSKRTE
VDDEGFEVGVMGSLTKLQNVTLATQPIASFDWSADKEGLGVCTAFDQTLR
VLVVTKLNKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034276XLOC_034276Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054360TCONS_00054360Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 103..148
e-value: 0.84
score: 17.5
coord: 251..291
e-value: 5.6
score: 12.3
coord: 313..353
e-value: 430.0
score: 0.3
coord: 156..199
e-value: 91.0
score: 4.6
coord: 58..99
e-value: 0.78
score: 17.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 107..148
e-value: 0.0095
score: 16.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 135..148
score: 8.804
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 2..360
e-value: 4.4E-54
score: 183.1
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 86..100
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 84..157
score: 9.81
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 11..351

Blast
[Close]
BLAST of TCONS_00054360-protein vs. Swiss-Prot (Human)
Match: WDR92 (WD repeat-containing protein 92 OS=Homo sapiens GN=WDR92 PE=1 SV=1)

HSP 1 Score: 505.368 bits (1300), Expect = 0.000e+0
Identity = 242/355 (68.17%), Postives = 298/355 (83.94%), Query Frame = 0 
Query:    6 PQIITHVQKSLNYTLFDAKFVPRSAKFVCVGSKANGSGVIQMYELTHNEMKGNVNLLKDLEKSKSFKCCTFGASSLKTRFLATGDFDGKLAIWDLEKPSLPVYSTKAHKEIINGIDGIGGLGIGEGAPELVTCSRDGSVKVWDPRQKDIPVANMEASNQDMKRDCWCVAFGHSYNESERIVCAGYDNGDIKMFDLRNMSLRWETHVKNGVCGLEFDRKDIVMNKLVATTLESKLHVFDLRTHHPNKGYSSITQKAHDSTIWSVKHLPQNRDIFMTTGGVGSLNLWKYSYPSKRTEVDDEGFEVGVMGSLTKLQNVTLATQPIASFDWSADKEGLGVCTAFDQTLRVLVVTKLNKV 360
            PQII H+QK  NYT+FD K+VP SAKFV +G+ A G+GVIQ+YE+ H    G++ LL+++EK+K  KC TFGA+SL+ R+LATGDF G L IW+LE P +PVYS K HKEIIN IDGIGGLGIGEGAPE+VT SRDG+VKVWDPRQKD PVANME    + KRDCW VAFG++YN+ ER+VCAGYDNGDIK+FDLRNM+LRWET++KNGVC LEFDRKDI MNKLVAT+LE K HVFD+RT HP KG++S+++KAH ST+W V+HLPQNR++F+T GG G L+LWKY YP +R++ D EG E+GV GS++ LQNVTL+TQPI+S DWS DK GL VC++FDQT+RVL+VTKLNK+
Sbjct:    7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH----GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNKI 357
The following BLAST results are available for this feature:
BLAST of TCONS_00054360-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR920.000e+068.17WD repeat-containing protein 92 OS=Homo sapiens GN... [more]
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