TCONS_00054962-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054962-protein
Unique NameTCONS_00054962-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054962-protein ID=TCONS_00054962-protein|Name=TCONS_00054962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp
MGGGDLNMKKHFHPLTMENLERVWKAEEKKRLEEERIAQLQSELQEERRR
EELQRQAVESGLVKKKSEKLDWMYSGYKKDDADDYLLGKRIEAKHMEPEQ
DTTNIPVKVEAKIYQPKASDVLMKVKEDPLFLIKKREEESRKELAMNPLK
MQKMKELLQQQISKKEKKKKKDKKKRKSKTHSSSDDEEDSRLRKRNNHRS
DRHDNEVPSRRDRSRSPRRDDRRRDRSNERPQERRGQRHRASPERRNEGR
RKSPERREPRRRASPERNSNRRESPNRNDKRRESPDRNDKRRESPDRNQR
RKESPGLRRKHQERQLDRNECERKRRDDSSDREDTKRRHNDRIQEKRVRA
RHDSTLSEEREPQRTKPQRTNNERDNKRRHNSSSPEPSRQKNKKKTSKRR
KSSSSDDSSNDEMERKRQEMMQNAKVRNEQREDSMKMLKIDRLKEAAEKA
ARKGKADFIQDMTLDSISSSSTSVEDRIKRGIFSKQRTKSAMDKFMKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034635XLOC_034635Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054962TCONS_00054962Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019339CIR_N_dom
IPR022209CWC25
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 151..175
NoneNo IPR availableCOILSCoilCoilcoord: 410..430
NoneNo IPR availableCOILSCoilCoilcoord: 23..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..437
IPR019339CBF1-interacting co-repressor CIR, N-terminal domainSMARTSM01083Cir_N_3coord: 11..47
e-value: 2.2E-11
score: 53.8
IPR019339CBF1-interacting co-repressor CIR, N-terminal domainPFAMPF10197Cir_Ncoord: 12..47
e-value: 9.1E-11
score: 41.7
IPR022209Pre-mRNA splicing factorPFAMPF12542CWC25coord: 66..148
e-value: 1.3E-14
score: 54.7

Blast
[Close]
BLAST of TCONS_00054962-protein vs. Swiss-Prot (Human)
Match: CWC25 (Pre-mRNA-splicing factor CWC25 homolog OS=Homo sapiens GN=CWC25 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.512e-28
Identity = 82/171 (47.95%), Postives = 116/171 (67.84%), Query Frame = 0 
Query:    1 MGGGDLNMKKHFHPLTMENLERVWKAEEKKRLEEERIAQLQSELQEERRREELQRQAVESGLVKKKSEKLDWMYSG-YKKDDADDYLLG----KRIEAKHMEPEQDTTNIPVKVEAKIYQPKASDVLM----KVKEDPLFLIKKREEESRKELAMNPLKMQKMKELLQQQI 162
            MGGGDLN+KK +HP T+ N+E+VWKAE+K   E ++I +LQ EL+EER REE+QR A + G VKKK EKLDWMY G     + D+YLLG    K +  K  E E   ++    +   I+ P  ++ L+    K++EDPLF+I+K+EEE ++E+  NP+KM+K+KELLQ  +
Sbjct:    1 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDVGAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFAPSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNPVKMKKIKELLQMSL 171
The following BLAST results are available for this feature:
BLAST of TCONS_00054962-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CWC252.512e-2847.95Pre-mRNA-splicing factor CWC25 homolog OS=Homo sap... [more]
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