TCONS_00055215-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055215-protein
Unique NameTCONS_00055215-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055215-protein ID=TCONS_00055215-protein|Name=TCONS_00055215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
ATSKCHRFITFTVSFVMFSNLIWFVAVLICWSFVDWKVDAQLAPGKANVC
AATIKQLYYVSVRKSRIGYQNYGTCCRRIFGLCYGRCTRSSQITVYYTTA
EVRYKQGYRYFCCSGWARQGDGCPTPICNPGCVNGHCSRPGVCTCKSGYN
GNRCKKDIDECLRKPCEQTCKNLPGTYACSCRAGYKKINNDSKSRQCVNV
EECLTTPCKCAQPKNCKATCTDTTGSFKCSCNKGFKLGTDQRTC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034773XLOC_034773Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055215TCONS_00055215Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR001881EGF-like_Ca-bd_dom
IPR018097EGF_Ca-bd_CS
IPR013032EGF-like_CS
IPR000152EGF-type_Asp/Asn_hydroxyl_site
IPR009030Growth_fac_rcpt_
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000742EGF-like domainSMARTSM00181egf_5coord: 127..155
e-value: 5.9
score: 15.9
coord: 160..198
e-value: 0.0016
score: 27.7
coord: 207..241
e-value: 29.0
score: 10.8
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 157..191
score: 9.784
IPR001881EGF-like calcium-binding domainSMARTSM00179egfca_6coord: 157..198
e-value: 4.6E-11
score: 52.8
coord: 199..241
e-value: 0.004
score: 21.2
IPR001881EGF-like calcium-binding domainPFAMPF07645EGF_CAcoord: 200..244
e-value: 9.3E-5
score: 22.5
coord: 157..197
e-value: 2.7E-7
score: 30.6
NoneNo IPR availableGENE3D2.40.155.10coord: 182..208
e-value: 1.4E-6
score: 27.4
NoneNo IPR availableGENE3D2.10.25.10coord: 158..181
e-value: 6.6E-10
score: 38.5
NoneNo IPR availableGENE3D2.10.25.10coord: 121..157
e-value: 0.1
score: 12.4
NoneNo IPR availableGENE3D2.10.25.10coord: 209..244
e-value: 5.4E-8
score: 32.5
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 157..194
IPR018097EGF-like calcium-binding, conserved sitePROSITEPS01187EGF_CAcoord: 199..229
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 143..154
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 143..154
IPR000152EGF-type aspartate/asparagine hydroxylation sitePROSITEPS00010ASX_HYDROXYLcoord: 170..181
IPR009030Growth factor receptor cysteine-rich domainSUPERFAMILY57184Growth factor receptor domaincoord: 112..244

Blast
[Close]
BLAST of TCONS_00055215-protein vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.033e-17
Identity = 40/100 (40.00%), Postives = 52/100 (52.00%), Query Frame = 0 
Query:  139 RPGVCTCKSGYNGNRCKKDIDECLRKPCEQ--TCKNLPGTYACSCRAGYKKINNDSKSRQCV-NVEECLTTPCKCAQPKNCKATCTDTTGSFKCSCNKGF 235
            +P +C C  GY G+ C+ DIDECL  PC    TC NL G ++CSC  G+         R C  ++ ECL +PCK        A C +  GSF C C  G+
Sbjct: 3844 QPFLCKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGF-------TGRACERDINECLQSPCKNG------AICQNFPGSFNCVCKTGY 3930
The following BLAST results are available for this feature:
BLAST of TCONS_00055215-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT42.033e-1740.00Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 S... [more]
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