TCONS_00055914-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055914-protein
Unique NameTCONS_00055914-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055914-protein ID=TCONS_00055914-protein|Name=TCONS_00055914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=615bp
MWLKQATHFLVFLQIFVNIIYACPADCTCYLTSVICQYNFLKKIPNGIPE
STTKLYLDGNQIERVERAELSNLKDLELLSIGSNTISFIEDDAFHNLTKL
TSLHINDNKLTRIKRTFFSNSPLLRHVRADRLSPNAPLEIDDHAFENQQD
LGELNLASNNMVRISNNTFAGLSNLKHLDISDNDIQVYSSHAFTPLTSSP
TIEIDDGIKCCCQTKAAFTAFGISQTCINPETNQQGDIASSPCTDTGVCG
SFRESTSDLWPPMPPEPTTSVTFASPSSSSSSSSVVATNIESSSSPKFSS
SSSSSTSSILHNSSPSPSSNIVSSSMSESKSVEIQVFQTLLTDSVSDHVY
TNHIDSASSSPDMSSVIPANSIEPTPVSKLSVPSTSITNSSIIPQSSAAP
VISSESNDHTTEILNHQYPSTVKPKLESSMSMQEPDYQTSSKHPHAMPSI
SNDVDQTTQAGTLQPSSNYPLEVSSIIMLHTISPSHSVPTLNGTCSVSTC
KAGCEFSQQHCQCFEKGTSKACLITSTLDSQTGDENSMADWQMAIIIGSC
VVVLCFIVFFIYFKKKQSRERQFNLNTSRQNMAMNDSPQGRDNRMFIIEE
TNEAGPVNRPIAEMY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035210XLOC_035210Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055914TCONS_00055914Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR000372LRRNT
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 73..96
e-value: 5.7
score: 15.3
coord: 172..195
e-value: 1.4
score: 17.9
coord: 149..171
e-value: 180.0
score: 2.9
coord: 97..120
e-value: 0.26
score: 20.4
IPR000372Leucine-rich repeat N-terminal domainSMARTSM00013lrrnt1coord: 22..54
e-value: 1.1E-4
score: 31.6
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 132..185
e-value: 3.4E-11
score: 42.7
coord: 52..110
e-value: 4.5E-12
score: 45.4
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 19..446
e-value: 2.2E-33
score: 114.7
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 23..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..324
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 423..465
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..280
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..23
score: 5.0

Blast
[Close]
BLAST of TCONS_00055914-protein vs. Swiss-Prot (Human)
Match: SLIT3 (Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.538e-22
Identity = 59/164 (35.98%), Postives = 88/164 (53.66%), Query Frame = 0 
Query:   22 ACPADCTCYLTSVICQYNFLKKIPNGIPESTTKLYLDGNQIERVERAELSNLKDLELLSIGSNTISFIEDDAFHNLTKLTSLHINDNKLTRIKRTFFSNSPLLRHVRADRLSPNAPLEIDDHAFENQQDLGELNLASNNMVRISNNTFAGLSNLKHLDISDNDI 185
            ACP  CTC   SV C    L+ +P GIP +  +L LD N I R+ + + + LK+L +L +  N +S IE  AF +L +L  L +N NKL  +    F ++P L   R D LS N    I   AF    D+  L L +N++  I +  F  L +L+ L +++N+I
Sbjct:   33 ACPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKL--TRLD-LSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNI 193
The following BLAST results are available for this feature:
BLAST of TCONS_00055914-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT32.538e-2235.98Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE... [more]
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