TCONS_00060248-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00060248-protein
Unique Name	TCONS_00060248-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	455

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00060248-protein ID=TCONS_00060248-protein|Name=TCONS_00060248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
MFTIIPLTSQLFFNWKSMKLQALCWSFLLSWLQFAVGLKMSNTPREESIH
TELFTNYNANVKPDGLINNTVQVHLDVTVLKLSFLDIRSQVLSIQTFTTL
RWFDKRLMWDPKAHHDITQISVPNSLLWTPDIVLYNDADNDYTTHNEIYR
TNVQIHHKGMLTWTSNIEWKANCEVDITWFPLDKQVCNLLYGSLSYTSEQ
LSLVLREKVRNIDGFVKRGDRNFVQSGEWDVKDINIKSVEQKFPCCRDNF
SALSYTVALSRFPQFYFLYMFFPIFSQFFLFLMVFHIRPESGERLGFGIT
ILLNITMFMTFISEKLPEKSNNRPLIGLLFSVLFFIYSLGLALASMTTFF
SSRLGPVPHWLRKFAAPAATEEAFIVENQTSENIEDEEINTTKDGPKIQT
ISRGSNSEVTWAMVMRSLDKYLFYIFLVISVLLPIIIGLSLDQNFFAGWK
NIFNV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037898	XLOC_037898	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00060248	TCONS_00060248	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006201	Neur_channel
IPR006202	Neur_chan_lig-bd
IPR006029	Neurotrans-gated_channel_TM
IPR018000	Neurotransmitter_ion_chnl_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005230	extracellular ligand-gated ion channel activity
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006201	Neurotransmitter-gated ion-channel	PRINTS	PR00252	NRIONCHANNEL	coord: 126..137 score: 47.4 coord: 93..109 score: 28.83 coord: 173..187 score: 46.33 coord: 257..269 score: 26.14
None	No IPR available	GENE3D	1.20.58.390		coord: 267..442 e-value: 4.6E-22 score: 77.8
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	PFAM	PF02931	Neur_chan_LBD	coord: 47..261 e-value: 1.6E-46 score: 158.4
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	GENE3D	2.70.170.10		coord: 41..266 e-value: 5.4E-52 score: 175.8
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	SUPERFAMILY	63712	Nicotinic receptor ligand binding domain-like	coord: 45..261
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	PFAM	PF02932	Neur_chan_memb	coord: 279..387 e-value: 3.6E-14 score: 53.3
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	SUPERFAMILY	90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 263..438
IPR018000	Neurotransmitter-gated ion-channel, conserved site	PROSITE	PS00236	NEUROTR_ION_CHANNEL	coord: 173..187

Blast

[Close]

BLAST of TCONS_00060248-protein vs. Swiss-Prot (Human)
Match: ACHA9 (Neuronal acetylcholine receptor subunit alpha-9 OS=Homo sapiens GN=CHRNA9 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.517e-50
Identity = 104/347 (29.97%), Postives = 177/347 (51.01%), Query Frame = 0

Query:   24 CWSFLLSWLQFAV----GLKMSNTPREESIHTELFTNYNANVKPDGLINNTVQVHLDVTVLKLSFLDIRSQVLSIQTFTTLRWFDKRLMWDPKAHHDITQISVPNSLLWTPDIVLYNDADNDYTTHNEIYRTNVQIHHKGMLTWTSNIEWKANCEVDITWFPLDKQVCNLLYGSLSYTSEQLSLVLREKVRNIDGFVKRGD-RNFVQSGEWDVKDINIKSVEQKFPCCRDNFSALSYTVALSRFPQFYFLYMFFPIFSQFFLFLMVFHIRPESGERLGFGITILLNITMFMTFISEKLPEKSNNRPLIGLLFSVLFFIYSLGLALASMTT---FFSSRLGPVPHWLR 362
            C SF   W+ FA       + ++    + +  +LF +Y+  ++P    +  + V L +T+ ++  +D R+Q+L+   +    W D  L WD   +  +  I +P+ L+W PDIVLYN AD++    +E   TNV + + G++TW +    K++C VD+T+FP D Q CNL +GS +Y   Q+         +I   +  GD  +F++  EW+V  +        + CC + +  +++T+ L R   FY + +  P     FL  + F++   SGE++  G+TILL +T+F   ++E +P  S N PLIG  +     + +   AL  M     F  +   PVPHW R
Sbjct:    7 CISF--CWIYFAASRLRAAETADGKYAQKLFNDLFEDYSNALRPVEDTDKVLNVTLQITLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLYNKADDE---SSEPVNTNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQV---------DIFNALDSGDLSDFIEDVEWEVHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPAASGEKVSLGVTILLAMTVFQLMVAEIMP-ASENVPLIGKYYIATMALITASTALTIMVMNIHFCGAEARPVPHWAR 338

The following BLAST results are available for this feature:

BLAST of TCONS_00060248-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00060248-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ACHA9	1.517e-50	29.97	Neuronal acetylcholine receptor subunit alpha-9 OS...	[more]

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TCONS_00060248-protein (polypeptide) - C. hemisphaerica