TCONS_00060428-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060428-protein
Unique NameTCONS_00060428-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060428-protein ID=TCONS_00060428-protein|Name=TCONS_00060428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MDGRKPLDEESFTIGHYCGYFDGELHKVKFQKPNSGFTDNILRTCKGLNF
PVKLELNFKNISSFCLSQGKIYYLDVDNNLMKLSPRGSPRKIHLNLGEGR
QIEKIFVEPVHETLILLVCCKVFNVRQQKVVRWRDQSKLNTTEEDFYSFD
VFEENEIVEYISGTDTNGFVLTNLGRIWKIENWNSRSSTWALTVLPYPSR
ISQIRCGKEHLIALTKEGQVLTMGKSTRGQLGQGSTASHDTLQPVEVLEP
LRFVQVAAGGWHSLVLSDSGDIYGWGWNESGQVGIHSDHNTNNRTLTKED
IPKLIFSPTLLDTPLDVTFQTISTGSRHSAGITTDGSVYFWGWNEYGQLM
DQTNQYILIPTKNNTVEMKRVVCEGWSTLMFS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038002XLOC_038002Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060428TCONS_00060428Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR009091RCC1/BLIP-II
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 253..266
score: 51.19
coord: 219..235
score: 44.12
coord: 272..288
score: 31.37
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 217..266
e-value: 3.9E-11
score: 43.3
coord: 335..371
e-value: 1.9E-5
score: 25.1
coord: 269..330
e-value: 5.9E-8
score: 33.1
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 256..266
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 322..332
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 218..269
score: 14.484
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 270..335
score: 12.514
NoneNo IPR availableGENE3D2.130.10.30coord: 21..382
e-value: 5.0E-56
score: 189.9
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 162..378

Blast
[Close]
BLAST of TCONS_00060428-protein vs. Swiss-Prot (Human)
Match: RCCD1 (RCC1 domain-containing protein 1 OS=Homo sapiens GN=RCCD1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.334e-32
Identity = 72/212 (33.96%), Postives = 105/212 (49.53%), Query Frame = 0 
Query:  200 RISQIRCGKEHLIALTKEGQVLTMGKSTRGQLGQGSTASHDTLQPVEVLEPLRFVQVAAGGWHSLVLSDSGDIYGWGWNESGQVG-------------------IHSDHNTNNRTLTKEDIPKLIFS-----PTLLDTPLDVTFQTISTGSRHSAGITTDGSVYFWGWNEYGQLMDQTNQYILIPTK-----NNTVEMKRVVCEGWSTLMFS 382
            R  Q+  G EH + L   GQV + G    GQLG G+  +    + +E L+ L   +VAAGGWHS+ +S++GDIY WGWNESGQ+                    ++ D +   RT   ED     F      P LLD P+       S GSRH+A +T  G +Y WGW +YGQL  +    +  P +     +  +++K V C  W+T +++
Sbjct:  159 RARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAELEPRLLEALQGLVMAEVAAGGWHSVCVSETGDIYIWGWNESGQLALPTRNLAEDGETVAREATELNEDGSQVKRTGGAEDGAPAPFIAVQPFPALLDLPMGSDAVKASCGSRHTAVVTRTGELYTWGWGKYGQLGHEDTTSLDRPRRVEYFVDKQLQVKAVTCGPWNTYVYA 370
The following BLAST results are available for this feature:
BLAST of TCONS_00060428-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RCCD16.334e-3233.96RCC1 domain-containing protein 1 OS=Homo sapiens G... [more]
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