TCONS_00060553-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060553-protein
Unique NameTCONS_00060553-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1192

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060553-protein ID=TCONS_00060553-protein|Name=TCONS_00060553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1192bp
MKDPVIFLLSSLLFLGCLARIAIGESIFKSPEKEVSNSKLSDVLLSPKKA
VQFLSTRVRRGLGSSYEECCSESGGCTREEINEYSYANSRVIKYLREISY
CRYWYCDSGYSISSWQRCNLRIDCGSNCEDEKDCSFPKSKNLKIEYADSH
LLGNNKAVIIRYGQSKIPLRLSNQKTAKVVCKSLGFRSALVIYSTRSRKI
RGNDKTYISIKCEGSERDFTRCKYDLKASKNDWMSFTEIKCYDKHSLSLR
KGYGESKWYRRFGAVYLSGRPICYNSWKAWGENEANAICREFSRFYIGKP
FNATALVNDTWLSATVTDLECDRSSQRFSECKANRGGYCHSKAGVVCISG
YYSFSLKNGERGLLEAIDIPIIATKPIQWTFNNTKVICDKETGIPYGKHE
QILVEDQNNTTCLVRDVECEGYEDSLAECSFGITPYECPETFYQISIDCI
SCRANDFTYIIREVNTTGTRQEQYNSILNVLENLKARCGDWSCYTHDYFA
NEHLHAYCVTWSALQRLKYLLKPRPNKFVYLNTEYDSTSMVREKRWEERF
SELHEAILKLSTSITKSQLQVSKRFQEIATFKTEKIKTKVNEFLVPRERQ
LALLFDSQTYHLLREQLVKLKNEATIVKEKELAEATIDTILSFVSALFQI
GEDWFEQLISLAKDGVSQIHQAKTESKRVAYLVGETKKLSPIIERFRQHF
EKNKVDLKAARRFLLVIKVDKERFDSHAAAEFLDRYGGVGEIAIEPNEFS
LLGDILSNVVEGLCGVIIESRSILATDAIQSEAQDGLCAETRKTMNSVLT
IIQEINSNEATMAQALEDLAQAKLEESSAYELSKSLENNIQSDLELKLKQ
MLSIFIIKVQKRNLIEEACDKITYLNHGHEKDFCTQIKQNIDDVNIDRLI
AFYQRDMCLNPTFASALIPITSKQRKDGTIDLSQLLQKSNDTLWKTSGEV
LLKIPNDHKWLSDHGWIQEEDTGPFFIKQFEIFMPPQHPSKGGPYRVETK
IEMIKNTLNKVQYMFDEPMSFGVDYEDNVGFLSCRGHRYSPYQTCSTDQT
YSVCITKSGTLPGPYYPSADSTWKISVRSKYELPNVYSSTPFHLQAKLQI
CSTQPKKVNRRQRDRSSSRPGCCTNKQYSDVKERIKASGNNPCKPCPAGM
SRLGGYFCENCPPGMKPSPDVYGCQSCPPGTQNQKSDSSKCL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038087XLOC_038087Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060553TCONS_00060553Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017448SRCR-like_dom
IPR001190SRCR
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005044scavenger receptor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005044 scavenger receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 805..825
NoneNo IPR availableCOILSCoilCoilcoord: 610..630
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: 5.0
IPR017448SRCR-like domainGENE3D3.10.250.10coord: 163..243
e-value: 9.1E-5
score: 22.2
IPR017448SRCR-like domainGENE3D3.10.250.10coord: 373..451
e-value: 5.4E-4
score: 19.9
IPR017448SRCR-like domainGENE3D3.10.250.10coord: 264..357
e-value: 5.2E-5
score: 22.8
IPR017448SRCR-like domainSUPERFAMILY56487SRCR-likecoord: 173..243
IPR001190SRCR domainPROSITEPS50287SRCR_2coord: 239..348
score: 8.29

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060553-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top