TCONS_00062271-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062271-protein
Unique Name	TCONS_00062271-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1238

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062271-protein ID=TCONS_00062271-protein|Name=TCONS_00062271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1238bp
MSSYVKAPSRLEGSKDEVGGLVSMKKKKDNDSGTKDSDGFARPPKLSSVL
GLQELARKRKQEKEEKERKQKKKKKKRRDSSSSSSSSSGEDSDDGESGRK
SSKHYRSYRPETPSNPGGVSHSAREKIKQRGERDKDKGIYAESRSSKKHD
SHHHKDRHYEKSSRSSRDDERSERRKERRGEDSSRRYADWEDTPSSRHTH
DGSRTTPRVRYSEINTPSRTTWDDDDDTKHGGSKSSWDVPTPGRDSYRAR
SERSERHHRSSERSERRNDSAYGYGHGKSRRPDDTPRFTPTHKYNSWEGK
GGRSRGHESTRSRRSPDNSPEGKENEADRSRWEEEQKNLDRAWYDLDAGY
DEYTNPFAQVSEDYVKKKEESLKLQKQKRKSARARQAQKDNDAWENNRLL
TSGVVTRTEVDDDFDESDEAKVYLLVHNIIPPFLDGRIMFTKQPEPVIPI
KDPTSDMATVARKGCHSVRLHREKKEALKAQKKEWELAGTKLGEIMGVKK
KDDGEEQGSDEDGDYKKGQQFSEHMKEKSEASSEFAKQKSIREQREYLPI
FAARTELLNIVRDNNVVVIVGETGSGKTTQLTQYLHEDGYSKRGMIGCTQ
PRRVAAMSVAKRVSEEMGVELGEDVGYAIRFEDVTSETTTIKYMTDGILL
RESIGTADLDNYSCIIMDEAHERSLNTDVLFGLLRDVVARRNDLKLIVTS
ATMDASKFAQFFGNVPIYQIPGRTFPVDVLYSKTCLDDYVDAAVKQSLQI
HLMPQKGDILVFMPGQEDIEVTCDLISERLEEIEGVPPLAVLPIYSQLPS
DLQAKIFEKAPDGVRKCVVATNIAETSLTVDGIRFVVDAGYCKLKVFNPK
IGMDALQVYPISQANANQRSGRAGRTGPGSAFRLYTETQYRNEMLVGTVP
EIQRTNLANVVLTLKSLNVDDLLEFHFMDPPPQDNILQSMYQLWTLGAID
NTGMLTKMGRKMVEFPLDPSLAKMLLVSAEMGCSDEVLTIVSMLSVPSIF
SRPRGREEESDAAREKFQEPESDHLSYLHVYQQWKANNYSSTWCKEHFIH
IKAMKKVREVRAQLKDIMTFLKLKIVSCSFDHDVVRKTICSAYFHQAARL
KGVGEYVNCRNGMPCHLHPSSALYGMGFCPDYVVYHELVMTSREFMQCVT
SVEGQWLAELGPMFFSVKESSHSRNEKRTEGVETKKMMEAEMQEASEIIK
ARKEEKMSRLSTVSRALIATPGRKAIGTPKRTPARFGL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039028	XLOC_039028	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062271	TCONS_00062271	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR014001	Helicase_ATP-bd
IPR007502	Helicase-assoc_dom
IPR011709	DUF1605
IPR011545	DEAD/DEAH_box_helicase_dom
IPR002464	DNA/RNA_helicase_DEAH_CS
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0004386	helicase activity
GO:0003676	nucleic acid binding
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..79
None	No IPR available	COILS	Coil	Coil	coord: 468..488
None	No IPR available	COILS	Coil	Coil	coord: 365..397
None	No IPR available	COILS	Coil	Coil	coord: 1185..1205
None	No IPR available	GENE3D	3.40.50.300		coord: 547..706 e-value: 6.4E-29 score: 100.4
None	No IPR available	GENE3D	3.40.50.300		coord: 724..897 e-value: 1.2E-52 score: 177.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 368..390
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..334
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 497..538
None	No IPR available	CDD	cd00079	HELICc	coord: 737..884 e-value: 1.75294E-11 score: 62.2552
None	No IPR available	CDD	cd00046	DEXDc	coord: 565..703 e-value: 8.68497E-31 score: 118.979
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 774..877 e-value: 1.0E-19 score: 81.5
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 751..877 e-value: 7.9E-13 score: 48.7
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 735..918 score: 17.137
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 546..730 e-value: 3.2E-29 score: 113.1
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 558..721 score: 18.997
IPR007502	Helicase-associated domain	SMART	SM00847	ha2_5	coord: 938..1028 e-value: 3.0E-36 score: 136.4
IPR007502	Helicase-associated domain	PFAM	PF04408	HA2	coord: 941..1026 e-value: 1.3E-22 score: 80.0
IPR011709	Domain of unknown function DUF1605	PFAM	PF07717	OB_NTP_bind	coord: 1085..1162 e-value: 8.6E-15 score: 54.8
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 556..706 e-value: 1.4E-6 score: 28.1
IPR002464	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	PROSITE	PS00690	DEAH_ATP_HELICASE	coord: 663..672
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 539..1104

Blast

[Close]

BLAST of TCONS_00062271-protein vs. Swiss-Prot (Human)
Match: PRP16 (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2)

HSP 1 Score: 1452.96 bits (3760), Expect = 0.000e+0
Identity = 762/1254 (60.77%), Postives = 916/1254 (73.05%), Query Frame = 0

Query:   10 RLEGSK--DEVGGLVSMKKKKDNDSGTKDSDGFARPPKLSSVLGLQELARKRKQEKEEKERKQKKKKKKR------RDSSSSSSSSSGEDSDDGESGRKSSKHYRSYRPETPSNPGGVSHSAREKIKQRGERDKDKGIYAESRSSKKHD---SHHHKDRHYEKSSRSSRDDERSERRKERRGEDSSRRYADWEDTPSSRHTHDGSRTTPRVRYSEINTPSRTTWDDDDDTKHGGSKSSWDVPTPGRDSYRARSERSERHHRSSERSERRNDSAYGYGHGKSRRPDDTPRFTPTHKYNSWEGKGGRSRGHESTRSRRSPDNSPEGK-------ENEADRSRWEEEQKNLDRAWYDLDAGYDEYTNPFAQVSEDYVKKKEESLKLQKQKRKSARARQAQKDNDAWENNRLLTSGVVTRTEVDDDFDESDEAKVYLLVHNIIPPFLDGRIMFTKQPEPVIPIKDPTSDMATVARKGCHSVRLHREKKEALKAQKKEWELAGTKLGEIMGVKKKDDGEEQGSDEDG--DYKKGQQFSEHMKEKSEASSEFAKQKSIREQREYLPIFAARTELLNIVRDNNVVVIVGETGSGKTTQLTQYLHEDGYSKRGMIGCTQPRRVAAMSVAKRVSEEMGVELGEDVGYAIRFEDVTSETTTIKYMTDGILLRESIGTADLDNYSCIIMDEAHERSLNTDVLFGLLRDVVARRNDLKLIVTSATMDASKFAQFFGNVPIYQIPGRTFPVDVLYSKTCLDDYVDAAVKQSLQIHLMPQKGDILVFMPGQEDIEVTCDLISERLEEIEGVPPLAVLPIYSQLPSDLQAKIFEKAPDGVRKCVVATNIAETSLTVDGIRFVVDAGYCKLKVFNPKIGMDALQVYPISQANANQRSGRAGRTGPGSAFRLYTETQYRNEMLVGTVPEIQRTNLANVVLTLKSLNVDDLLEFHFMDPPPQDNILQSMYQLWTLGAIDNTGMLTKMGRKMVEFPLDPSLAKMLLVSAEMGCSDEVLTIVSMLSVPSIFSRPRGREEESDAAREKFQEPESDHLSYLHVYQQWKANNYSSTWCKEHFIHIKAMKKVREVRAQLKDIMTFLKLKIVSCSFDHDVVRKTICSAYFHQAARLKGVGEYVNCRNGMPCHLHPSSALYGMGFCPDYVVYHELVMTSREFMQCVTSVEGQWLAELGPMFFSVKESSHSRNEKRTEGVETKKMMEAEMQEASEIIKARK--EEKMSRLSTVSRALIATPGRKAIG---TPKRTPARFGL 1238
            RLEG+    +VGGL+   K     S   +   F  P    S+LGL  LA  +++E+EEK+  + KKK K        +S      +  E  D      +  +HYRS R ETPS+PGGVS    E+ +QR    ++ G+YA S+  K      S               R    S   ++   E SSRR     + P S          PR R  +  TPSR+TW+++D       +S W+ P+P   SYR     SER HR S R   R+         + +  DDTP  TP++KYN W       R H  +  R S       +       + E +R +WE++Q+  DR WY +D GYDE+ NP A  SEDYV+++E+ L  QKQKR SA+ RQ  +DN+ WE NR+LTSGVV R EVD+DF+E + AKV+L+VHN++PPFLDGRI+FTKQPEPVIP+KD TSD+A +ARKG  +VR HRE+KE  KAQ K WELAGTKLG+IMGVKK+++  ++   EDG  DY+  Q+F++HMK KSEASSEFAK+KSI EQR+YLPIFA + ELL I+RDN++V++VGETGSGKTTQLTQYLHEDGY+  GMIGCTQPRRVAAMSVAKRVSEEMG  LGE+VGYAIRFED TSE T IKYMTDGILLRES+  ADLD+YS IIMDEAHERSLNTDVLFGLLR+VVARR+DLKLIVTSATMDA KFA FFGNVPI+ IPGRTFPVD+L+SKT  +DYV+AAVKQSLQ+HL    GDIL+FMPGQEDIEVT D I E LEE+E  P LAVLPIYSQLPSDLQAKIF+KAPDGVRKC+VATNIAETSLTVDGI FV+D+GYCKLKVFNP+IGMDALQ+YPISQANANQRSGRAGRTGPG  FRLYT++ Y+NE+L  TVPEIQRTNLANVVL LKSL V DLL+FHFMDPPP+DN+L SMYQLW LGA+DNTG LT  GR MVEFPLDP+L+KML+VS +MGCS E+L IVSMLSVP+IF RP+GREEESD  REKF  PESDHL+YL+VY QWK NNYS+ WC +HFIH KAM+KVREVRAQLKDIM   ++ + SC  D D+VRK IC+AYFHQAA+LKG+GEYVN R GMPCHLHP+S+L+GMG+ PDY+VYHELVMT++E+MQCVT+V+G+WLAELGPMF+SVK++  SR E R    E    ME EM  A E ++AR+  +EK S L +V    I TPGRK  G   TP+RTPARFGL
Sbjct:   12 RLEGTDLDCQVGGLICKSK-----SAASEQHVFKAPAPRPSLLGLDLLASLKRREREEKDDGEDKKKSKVSSYKDWEESKDDQKDAEEEGGDQAGQNIRKDRHYRSARVETPSHPGGVSEEFWERSRQRERERREHGVYASSKEEKDWKKEKSRDRDYDRKRDRDERDRSRHSSRSERDGGSERSSRR-----NEPES----------PRHRPKDAATPSRSTWEEEDSGYGSSRRSQWESPSPT-PSYRD----SERSHRLSTRDRDRS--------VRGKYSDDTPLPTPSYKYNEW----ADDRRHLGSTPRLSRGRGRREEGEEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQKRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMGVKKEEE-PDKAVTEDGKVDYRTEQKFADHMKRKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQGEPMTPRRTPARFGL 1227

The following BLAST results are available for this feature:

BLAST of TCONS_00062271-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062271-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PRP16	0.000e+0	60.77	Pre-mRNA-splicing factor ATP-dependent RNA helicas...	[more]

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TCONS_00062271-protein (polypeptide) - C. hemisphaerica