TCONS_00062827-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062827-protein
Unique Name	TCONS_00062827-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	533

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062827-protein ID=TCONS_00062827-protein|Name=TCONS_00062827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=533bp
SLIQGAMFGGFYKTYQVKVQDESLRNDLIEVHAQAIASVQAYCHWLVKCQ
GAAQNNENGLQQFQSIVVSMLDTIHTMFSKEVPERISSAAAHLLVSITTT
VRPSFFLRIEQGQKLFQAVEGGCKECSQTVQTLLYRALSNSLILTWNFLN
DAQQEWESRSENHRNLINTLCKDISSINMAALLSNPAAKEQYKSTIKTIC
SILSDIVDAASSEGTKSRKIMFNSVHEYIDVFSHMLTAYITDTDVADKIM
SFLLECLRSLRIQMGTVGVEKLVNTLLELLKRDQILYIIQSGNTSGINAL
SRFLKMLELIVQEHNPSFKTLLPNVISFCLNDILPILAEHNVPDLKMDLL
ELFHQLLLQNWRYFFKSNVLSKMNGEDQIQHEDQFLTILKAFGQPLMETE
IELFKKSIQVLESINSKNRLYQKALFQTTMLSSFLQVLMNSLVTKSHNLL
QEEIIQGVYSMVSTNFDAYFSQFIPSFLMNTGGLTDHQKSQLHANYKRHQ
DTPSFMTSLQQFIGDLRYLQIVNSSLPKGTITL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039356	XLOC_039356	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062827	TCONS_00062827	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 33..481 e-value: 1.3E-9 score: 36.5
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 58..478

Blast

[Close]

BLAST of TCONS_00062827-protein vs. Swiss-Prot (Human)
Match: XPO6 (Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1)

HSP 1 Score: 405.216 bits (1040), Expect = 1.083e-129
Identity = 211/540 (39.07%), Postives = 332/540 (61.48%), Query Frame = 0

Query:    2 LIQGAMFGGFYKTYQVKVQDES-LRNDLIEVHAQAIASVQAYCHWLVKCQGAAQNNENGLQQFQSIVVSMLDTIHTMFSKEVPERISSAAAHLLVSITTTVRPSFFLRIEQGQKLFQAV-EGGCKECSQTVQTLLYRALSNSLILTWNFLNDAQQEWESRSENHRNLINTLCKDISSINMAALLSNPAAK---EQYKSTIKTICSILSDIVDAASSEGTKSRKIMFNSVHEYIDVFSHMLTAYITDTDVADKIMSFLLECLRSLRIQMGTVGVEKLVNTLLELLKRDQILYIIQSGNTSGINALSRFLKMLELIVQEHNPSFKTLLPNVISFCLNDILPILAEHNVPDLKMDLLELFHQLLLQNWRYFFKSNVLSKMN---GEDQIQHEDQFLTILKAFGQPLMETEIELFKKSIQVLESINSKNRLYQKALFQTTMLSSFLQVLMNSLVTKSHNLLQEEIIQGVYSMVSTNFDAYFSQFIPSFLMNTGGLTDHQKSQLHANYKRHQDTPSFMTSLQQFIGDLRYLQIVNSSLPKGTITL 533
            L++  ++G   K Y ++    S L+ DLI+VHAQ++A++QAY HWL   Q  ++ +    QQF +++ + +D I  + S +V +++  +A HLLVS+ TTVRP F + I   QK+F  + +          Q L+ RALSN L+L W  L + +Q+W  RS NH +LI+ L +D  ++  +A+   P  K   +  K  I    S+L DIV+  S E TKSR+I + S+ E + V   +  A+I  +DV D+++SF L   R LR+QMG    E+++ T L +  R+Q+   I    ++G   + +FLK+L+++VQE    FK  LP++I+ C+  + PI+AE   PD+K +L EL  + L  NWRYFFKS VL+ +     E+Q+++E QF  I++AFGQ  ++ +I LFK+++  LE++N+K +LY K +F+T ML  F+ VL+  LV KSH+LLQEEI   +Y+M S +FD +F+ F+P FL +  G+  +QKS L  N+K  +D PSF  ++ + + DLRY ++ N SLP GT+ L
Sbjct:  590 LVKVTLYGSQIKLYNIETAVPSVLKPDLIDVHAQSLAALQAYSHWLA--QYCSEVHRQNTQQFVTLISTTMDAITPLISTKVQDKLLLSACHLLVSLATTVRPVFLISIPAVQKVFNRITDASALRLVDKAQVLVCRALSNILLLPWPNLPENEQQWPVRSINHASLISALSRDYRNLKPSAV--APQRKMPLDDTKLIIHQTLSVLEDIVENISGESTKSRQICYQSLQESVQVSLALFPAFIHQSDVTDEMLSFFLTLFRGLRVQMGVPFTEQIIQTFLNMFTREQLAESILHEGSTGCRVVEKFLKILQVVVQEPGQVFKPFLPSIIALCMEQVYPIIAERPSPDVKAELFELLFRTLHHNWRYFFKSTVLASVQRGIAEEQMENEPQFSAIMQAFGQSFLQPDIHLFKQNLFYLETLNTKQKLYHKKIFRTAMLFQFVNVLLQVLVHKSHDLLQEEIGIAIYNMASVDFDGFFAAFLPEFLTSCDGVDANQKSVLGRNFKMDRDLPSFTQNVHRLVNDLRYYRLCNDSLPPGTVKL 1125

The following BLAST results are available for this feature:

BLAST of TCONS_00062827-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062827-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
XPO6	1.083e-129	39.07	Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1	[more]

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TCONS_00062827-protein (polypeptide) - C. hemisphaerica