TCONS_00065427-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065427-protein
Unique NameTCONS_00065427-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065427-protein ID=TCONS_00065427-protein|Name=TCONS_00065427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MDHTSSFLDTDDIISPETKPPRAPKCARCRNHGVVSWLKGHKRFCKWKDC
PCSKCVLITERQRVMAAQVALRRQQAQEENNQDAKLKINYKSFHRSESED
GSQPVVRGGQRHDSSSDNMSTSTTSSSLQSPKHSPNPIINRQPSVTEQPE
NNDVDNNQPITNKSSSKTIKSTRSAFNTCSNSNNNKSRYQASKKDPFEVI
TKIFPDFDSYTLAETLQNCHGNIYLAVEALVALKDKTRVGVLPPRVYHPV
YLPHPYRHQVPPYERYPYKPPNYIPHPAYFRTSAKPPHTSCTDIDCSCYK
HHIKDKKQSYLETRKRSLDALMMSPKLRDAHADYLTYLKSVKELKRIEKS
NPVLYVNGKKPVTAM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041003XLOC_041003Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065427TCONS_00065427Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001275DM_DNA-bd
IPR005173DMA
IPR003892CUE
IPR009060UBA-like
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0005515 protein binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001275DM DNA-binding domainSMARTSM00301DM_3coord: 22..75
e-value: 4.9E-28
score: 109.1
IPR001275DM DNA-binding domainGENE3D4.10.1040.10coord: 21..68
e-value: 3.8E-25
score: 87.1
IPR001275DM DNA-binding domainPFAMPF00751DMcoord: 22..68
e-value: 1.4E-22
score: 79.2
IPR001275DM DNA-binding domainPROSITEPS40000DM_1coord: 26..55
IPR001275DM DNA-binding domainPROSITEPS50809DM_2coord: 26..73
score: 14.218
IPR001275DM DNA-binding domainSUPERFAMILY82927Cysteine-rich DNA binding domain, (DM domain)coord: 20..68
NoneNo IPR availableGENE3D1.10.8.10coord: 190..233
e-value: 1.1E-5
score: 24.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..190
IPR005173DMRTA motifPFAMPF03474DMAcoord: 194..230
e-value: 6.3E-6
score: 25.6
IPR003892Ubiquitin system component CuePROSITEPS51140CUEcoord: 192..235
score: 11.051
IPR009060UBA-likeSUPERFAMILY46934UBA-likecoord: 191..236

Blast
[Close]
BLAST of TCONS_00065427-protein vs. Swiss-Prot (Human)
Match: DMTA2 (Doublesex- and mab-3-related transcription factor A2 OS=Homo sapiens GN=DMRTA2 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 6.819e-31
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 0 
Query:   21 PRAPKCARCRNHGVVSWLKGHKRFCKWKDCPCSKCVLITERQRVMAAQVALRRQQAQEENNQDAKLKINYKS 92
            PR PKCARCRNHGVVS LKGHKR+C+WKDC C+KC LI ERQRVMAAQVALRRQQAQEE N+  +L++ Y +
Sbjct:   65 PRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEE-NEARELQLLYGT 135
The following BLAST results are available for this feature:
BLAST of TCONS_00065427-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DMTA26.819e-3175.00Doublesex- and mab-3-related transcription factor ... [more]
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