TCONS_00065558-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00065558-protein
Unique Name	TCONS_00065558-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	441

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065558-protein ID=TCONS_00065558-protein|Name=TCONS_00065558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp
MVTEKNDLFETYGASQRYYYDLKDEETNHIQHYNQKEKHKGFANKIKETF
KSGFLPQGYPTSVSEDYLEYQLWDTVQAFCSSITGMLATQAILKGYGVGN
EKATVMAASITWMLKDGAGMIGRIMFAWLKGTQLDCDAKRWRLCADVLND
TAIFLDLLAPIFKSYFIFIACLSSITRSIVGVAGGATRAALTLHQARRNN
MADVSAKDGSQETLVNLMALIASFILTPIVADRPILVWFLFILFTFFHLF
ANYRAVSCVVMETLNMNRLYIVMQHFIEHEAFLSPKQVNKLDPVLRRHCN
FKDICIGSKLGSIIRTYKIHNSDLEEILKNERNQYIVSFDQGKVYVALRH
GVDDSIILQSSIMAILLDIALRSSDINSQYLNSIRSCIDKGNPHSTFQRL
KPYVEDLNVKLVKGLSANGWDLTKYHLNADEWRYQWPDKAL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041087	XLOC_041087	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065558	TCONS_00065558	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006968	RUS_fam

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 314..334
IPR006968	Root UVB sensitive family	PFAM	PF04884	DUF647	coord: 44..279 e-value: 1.8E-98 score: 328.9

Blast

[Close]

BLAST of TCONS_00065558-protein vs. Swiss-Prot (Human)
Match: RUS1 (RUS1 family protein C16orf58 OS=Homo sapiens GN=C16orf58 PE=1 SV=2)

HSP 1 Score: 328.946 bits (842), Expect = 1.025e-108
Identity = 174/394 (44.16%), Postives = 250/394 (63.45%), Query Frame = 0

Query:   54 FLPQGYPTSVSEDYLEYQLWDTVQAFCSSITGMLATQAILKGYGVGNEKATVMAASITWMLKDGAGMIGRIMFAWLKGTQLDCDAKRWRLCADVLNDTAIFLDLLAPIFKSYFIFIACLSSITRSIVGVAGGATRAALTLHQARRNNMADVSAKDGSQETLVNLMALIASFILTPIVADRPILVWFLFILFTFFHLFANYRAVSCVVMETLNMNRLYIVMQHFIEHEAFLSPKQVNKLDPVLRRHCNFKDICIGSKLGSIIRTYKIHNSDLEEILKNERNQYIVSFDQG--KVYVALRHGVDDSIILQSSIMAILLDIALRSSDINSQYLNSIRSCIDKGNPHSTFQRLKPYVEDLNV---KLVKGLSANGWDLTKYHLNADEWRYQW---PDK 439
            FLPQG+P SVS DYL YQLWD+VQAF SS++G LATQA+L G GVGN KATV AA+ TW++KD  GM+GRI+FAW KG++LDC+AK+WRL AD+LND A+FL+++AP++   F      S++ + IV VAGGATRAALT+HQARRNNMADVSAKD SQETLVNL  L+ S ++ P+V+  P      F   T  H++ANYRAV  +VMETLN  RL +V++H+++    L P   N+++P+         + +G  L  ++ +      +L+++++  +  Y++ +DQ   +V V L        IL+++   ++L  AL+        L  +R+ +  G    ++  +K   E L++   K +KGL   GW   K+ L  DEWR  W   P+K
Sbjct:   77 FLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARRNNMADVSAKDSSQETLVNLAGLLVSLLMLPLVSGCPGFSLGCFFFLTALHIYANYRAVRALVMETLNEGRLRLVLKHYLQRGEVLDPTAANRMEPLWTGFWPAPSLSLGVPLHRLVSSV----FELQQLVEGHQESYLLCWDQSQNQVQVVLNQKAGPKTILRAATHGLMLG-ALQGDGPLPAELEELRNRVRAGPKKESWVVVKETHEVLDMLFPKFLKGLQDAGWKTEKHQLEVDEWRATWLLSPEK 465

The following BLAST results are available for this feature:

BLAST of TCONS_00065558-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00065558-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RUS1	1.025e-108	44.16	RUS1 family protein C16orf58 OS=Homo sapiens GN=C1...	[more]

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TCONS_00065558-protein (polypeptide) - C. hemisphaerica