TCONS_00065605-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065605-protein
Unique NameTCONS_00065605-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065605-protein ID=TCONS_00065605-protein|Name=TCONS_00065605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
MVSLKLLFTVALLHIVIEMCYGMCDQRPFGGKLKCCTKKDSNCFVKVNNS
RRRGNQNTICYCDDYCKFTNDCCSDVSKVKSLCRRQAKNCEVSSWQAWGK
CSAKCGIGFMKRTRRILQTPENGGESCPVLRQTRGCNVNRCDNTKNKYKA
AIVLPINFRREKFGDYGYENILPAINENDNNVQSDYINRPTYSYCVHYRH
SYKRDACQNTWAASFQTSVPVCVECQSRVMNGGHCRGEGAIGVRTRWKAL
GVARCHGDWIRLGDIIPNCTCKEKKFANFVFV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041099XLOC_041099Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065605TCONS_00065605Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 92..142
e-value: 3.3E-11
score: 53.2
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 93..141
e-value: 6.7E-6
score: 26.1
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 88..141
e-value: 2.1E-12
score: 46.7
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 89..142
score: 11.202
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 89..138

Blast
[Close]
BLAST of TCONS_00065605-protein vs. Swiss-Prot (Human)
Match: SBSPO (Somatomedin-B and thrombospondin type-1 domain-containing protein OS=Homo sapiens GN=SBSPON PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.437e-20
Identity = 66/257 (25.68%), Postives = 105/257 (40.86%), Query Frame = 0 
Query:   34 KCCTKKDSNCFVKVNNSRRRGNQNTICYCDDYCKFTNDCCSDVSKVKSLCRRQAKNCEVSSWQAWGKCSAKCGIGFMKRTRRILQTPENGGESCPVLRQTRGC---NVNRCDNTKNKYKAAIVLPINFRREKFGDYGYENILPAINENDNNVQSDYINRPTYSYCVHYRHSYKRDACQNTWAASFQTSVPVCVECQSRVMNGG--HCRGEG--AIGVRT-RWKALGVARCHGDWIRLGDIIPNCTCKEKKFANFVFV 282
            +CC  +D  CF +     R       C+CD  C+FT DCC D  +        A+ C V  W  W  C+ +C      R R + Q P+NGG  CP L +  GC   +  +  +  + Y  A +    F +E+       +   + +  D     ++       +C        R      W    +    VCV+CQ   MN     C G+G  + G +T  W+A+G  RC G W ++  +   C+C      +F+F+
Sbjct:   27 RCCPGRDPACFAR---GWRLDRVYGTCFCDQACRFTGDCCFDYDRACP-----ARPCFVGEWSPWSGCADQCKPTTRVRRRSVQQEPQNGGAPCPPLEERAGCLEYSTPQGQDCGHTYVPAFITTSAFNKERTRQATSPHW--STHTEDAGYCMEFKTESLTPHCALENWPLTR------WMQYLREGYTVCVDCQPPAMNSVSLRCSGDGLDSDGNQTLHWQAIGNPRCQGTWKKVRRVD-QCSC--PAVHSFIFI 264
The following BLAST results are available for this feature:
BLAST of TCONS_00065605-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SBSPO4.437e-2025.68Somatomedin-B and thrombospondin type-1 domain-con... [more]
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