TCONS_00067106-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067106-protein
Unique NameTCONS_00067106-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length770

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067106-protein ID=TCONS_00067106-protein|Name=TCONS_00067106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=770bp
MKSFVYTTLKAFLDYXADAFVAKMREDADWSEDKAMACCCMWRGCSWEGC
GEWTELLRHVMYHGYHVLLKALGKIVQEKLQLATCRIEMEDPYNMLINAT
PLLCQWSGCNTEFFCPNKFYRHVDKHGLETHPLPDEKTDLKFECSWEACN
DRFRNKYKLKEHVRVHTHEKLIACPDCGGMFANRTKLKDHLSRQDPEGYE
NFQCSHCLKRCASERLLRDHMRHHVNYLKCPHCEMTCPNPGSLKYHIGYR
HTDIRPFSCAMCEQSFKSHSDLVRHEESHLEKSYICDVKDCFYSTKTQHC
LRRHIRVVHSSTEKRYICHICNTAYSRGFGLTKHLKKKHNFSWPSGHPRF
RYIQYEDGFYRLQMVRFESVELTKRLHGNIEENNGISEPENDGDNNEEDG
EITGAVYDGVNELDNENTINIVLIDSSENYEQTDLQGIEQQINIVEEQAE
NVELDTSNVEINTTNVEDEPEDIEENPEHMEVPESLKDQVESVDEDENFV
EKLEETEEDVLYTNVAYQDKSGGEENDSEDIEEEIITCSDDIIETSTTLT
ANPTTPSSNTVDALRSSANILPSAIPCEIILKPKPKGYEKTVMAQLLDIG
KKQNHQELASLVDSAIVTDLYQRLKAGMSREKHQQKVVYAGDITTSELEE
GGQGAQEGGPPEVGANEVLVTEEVTVESKRPLEDGSENKRPLEDGSENKR
PLEDGSESEEEEERNCKRIKCEEDSAEIDLNEIIEHVSKDISNDVTLSNE
IRNKMVASVLLSLNGETQTT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041927XLOC_041927Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067106TCONS_00067106Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 435..455
NoneNo IPR availableGENE3D3.30.160.60coord: 213..236
e-value: 6.9E-5
score: 22.4
NoneNo IPR availableGENE3D2.60.260.40coord: 163..212
e-value: 1.6E-13
score: 50.2
NoneNo IPR availableGENE3D2.40.155.10coord: 273..541
e-value: 5.2E-21
score: 75.3
NoneNo IPR availableGENE3D2.10.69.10coord: 237..272
e-value: 5.6E-11
score: 42.0
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 257..279
e-value: 0.007
score: 16.7
NoneNo IPR availableGENE3D3.30.160.60coord: 102..130
e-value: 0.41
score: 10.2
coord: 141..162
e-value: 7.2E-9
score: 35.0
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 284..309
e-value: 0.023
score: 23.9
coord: 142..166
e-value: 0.0021
score: 27.3
coord: 102..126
e-value: 5.0
score: 15.9
coord: 202..224
e-value: 0.16
score: 21.0
coord: 38..63
e-value: 34.0
score: 8.6
coord: 172..192
e-value: 63.0
score: 6.2
coord: 228..251
e-value: 0.0054
score: 25.9
coord: 257..279
e-value: 0.026
score: 23.7
coord: 316..339
e-value: 0.061
score: 22.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 104..126
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 259..279
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 204..224
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 144..168
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 318..339
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 228..256
score: 8.58
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 284..314
score: 9.162
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 202..224
score: 8.58
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 316..344
score: 9.681
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 142..171
score: 12.715
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 257..284
score: 10.803
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 228..279
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 146..191
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 265..324

Blast
[Close]
BLAST of TCONS_00067106-protein vs. Swiss-Prot (Human)
Match: HINFP (Histone H4 transcription factor OS=Homo sapiens GN=HINFP PE=1 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 3.738e-101
Identity = 161/359 (44.85%), Postives = 227/359 (63.23%), Query Frame = 0 
Query:   40 CMWRGCSWEGCGEWTELLRHVMYHGYHVLLKALG-KIVQEKLQLATCRIEMEDPYNMLINATP--LLCQWSGCNTEFFCPNKFYRHVDKHGLETHPLPDEKTDLKFECSWEACNDRFRNKYKLKEHVRVHTHEKLIACPDCGGMFANRTKLKDHLSRQDPEGYENFQCSHCLKRCASERLLRDHMRHHVNYLKCPHCEMTCPNPGSLKYHIGYRHTDIRPFSCAMCEQSFKSHSDLVRHEESHLEK-SYICDVKDCFYSTKTQHCLRRHIRVVH-SSTEKRYICHICNTAYSRGFGLTKHLKKKHNFSWPSGHPRFRYIQYEDGFYRLQMVRFESVELTKRLHGNIEENNGISEPENDG 393
            C+W+ C +       +L+RHV +H YH  LK  G + +Q +  L  C ++ +     +I   P   LC W  C   F  P  FYRHV+ H L        K +    C W+ C   F+++ KL+EH+R HT EK++ACP CGGMFAN TK  DH+ RQ     ++FQCSHC KR A+ERLLRDHMR+HVN+ KCP C+MTCP P SL+ H+ +RH++ RPF C  C+ S K+  DL +H ++H E+ +Y CD ++C +S ++   ++ H R VH   +E RY CH+C+  ++RG  LT HL+KKH F WPSGHPRFRY ++EDG+ RLQ+VR+ESVELT++L    +E +G+    N+ 
Sbjct:   66 CLWQECGFCSLDSSADLIRHVYFHCYHTKLKQWGLQALQSQADLGPCILDFQS--RNVIPDIPDHFLCLWEHCENSFDNPEWFYRHVEAHSLCCEYEAVGKDNPVVLCGWKGCTCTFKDRSKLREHLRSHTQEKVVACPTCGGMFANNTKFLDHIRRQTSLDQQHFQCSHCSKRFATERLLRDHMRNHVNHYKCPLCDMTCPLPSSLRNHMRFRHSEDRPFKCDCCDYSCKNLIDLQKHLDTHSEEPAYRCDFENCTFSARSLCSIKSHYRKVHEGDSEPRYKCHVCDKCFTRGNNLTVHLRKKHQFKWPSGHPRFRYKEHEDGYMRLQLVRYESVELTQQLLRQPQEGSGLGTSLNES 422
The following BLAST results are available for this feature:
BLAST of TCONS_00067106-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HINFP3.738e-10144.85Histone H4 transcription factor OS=Homo sapiens GN... [more]
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