TCONS_00067254-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067254-protein
Unique NameTCONS_00067254-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length662

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067254-protein ID=TCONS_00067254-protein|Name=TCONS_00067254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=662bp
MSQYKVHRVRFIQHKPKATISAALDVNCNPPRLAVSLDDGSIEIRDPSNH
FMVDITIPGQNGRTAEHLAWNNGRLFSGGLNGQIIEWDLKNLVPKYSENS
CGGPVWCLKFNHKKNLLAAGCEDGSVRIFKLMSHGLNYERSLHKQESRIL
SLAWSKDDANLVTGGFESTIRIYNFESGQIVSRITTDGKGDENTMVWAVE
VMDDFTVVTGDSKGCTQFWDGHTGTLLTSFKSHEADVLTLAPCYEEVYSS
GVDGKVVQFNSRLVDNEKKWTMNKHIQLTDYDIRALVCFKNPQTDRNFVI
AAGVDPYLYAVPTNKLTIAKMKKYFNTPTDVCQVAPDANQLLYRSNNKLN
LWQLESNQDLSLKESKQLLEINCDGDDHIFCSALSACGKYVCYSTIGKSR
LFEIEQSPLKLNKIYRSLPPLSKIAFTPDSRYMVGVTFAKKLHLVDFQNE
NEFELSISKIKISLPYRFLKVANDNETIGLVDAESNIFIFRISESGLEYA
SQVPSVSDKISSFTFHPQSSRIMLSTSAKDVFEFDYKEGKFTTWLFDLND
AGIFKKLSRDHHLLNQVCVNPVNPSEIFVQAFNEFGKLLENATVDIQSEE
TEDQPDTKKAKKSMNNPLKTINSFKKLLHFSFNNQGEMITVEIPQSFKEM
LPLPLKRKRYQK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042013XLOC_042013Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067254TCONS_00067254Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR024977Apc4_WD40_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 496..535
e-value: 420.0
score: 0.4
coord: 223..260
e-value: 3.0
score: 14.0
coord: 135..174
e-value: 0.0017
score: 27.6
coord: 50..88
e-value: 36.0
score: 7.2
coord: 13..46
e-value: 130.0
score: 3.7
coord: 91..130
e-value: 0.0022
score: 27.2
coord: 411..446
e-value: 100.0
score: 4.4
coord: 177..220
e-value: 27.0
score: 8.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 142..183
score: 10.776
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 437..589
e-value: 8.5E-7
score: 27.7
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 272..436
e-value: 5.2E-8
score: 31.9
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 10..271
e-value: 2.4E-38
score: 131.1
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 108..199
e-value: 6.5E-9
score: 35.9
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 75..269
score: 16.612
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 295..568
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 22..265
coord: 374..449

Blast
[Close]
BLAST of TCONS_00067254-protein vs. Swiss-Prot (Human)
Match: UTP4 (U3 small nucleolar RNA-associated protein 4 homolog OS=Homo sapiens GN=UTP4 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 9.373e-74
Identity = 184/701 (26.25%), Postives = 335/701 (47.79%), Query Frame = 0 
Query:    1 MSQYKVHRVRFIQHKPKATISAALDVNCNPPRLAVSLDDGSIEIRDPSNHFMVDITIPGQNGRTAEHLAWNNG-RLFSGGLNGQIIEWDLKNLVPKYSENSCGGPVWCLKFNHKKNLLAAGCEDGSVRIFKLMSHGLNYERSLHKQESRILSLAWSKDDANLVTGGFESTIRIYNFESGQIVSRITTD----GKGDENTMVWAVEVMDDFTVVTGDSKGCTQFWDGHTGTLLTSFKSHEADVLTLAPCYEE--VYSSGVDGKVVQFNSRLV---DNEKKWTMNKHIQLTDYDIRALVCFKNPQTDRNFVIAAGVDPYLYAVP-TNKLTI----AKMKKYFNTPTDVCQVAPDANQLLYRSNNKLNLWQLES------NQD-LSL-KESKQLLEINCDGDDHIFCSALSACGKYVCYSTIGKSRLFEI--EQSPLKLNKIYRSLPPLSK----IAFTPDSRYMVGVTFAKKLHLV-----DFQNENEFELSISKIKISLPYRFLKVANDNETIGLVDAESNIFIFRISESGLEYASQVPSVSDKISSFTFHPQSSRIMLSTSAKDVFEFDYKEGKFTTWLFDLNDAGIFKKLSRDHHLLNQVCVNPVNPSEIFVQAFNEFGKLLENATVDIQSEET---EDQPDTKKA---KKSMNNPLKTINSFKKLLHFSFNNQGEMITVEIP-QSFKEMLPLPLKRKRY 660
            M ++KVHRVRF  + P      A +   N  RLAVS  DG++EI + S ++  +   PG   R  E L W  G RLFS GLNG+I+E+DL+ L  KY+ ++ GGP+W +  +   + L  GCEDGSV++F++    + +ER+  +Q+SRILSL+W     ++  G  +  I +++ +SG  V ++  D    G      +VW V  + D T+++ DS G  QFWD  TGTL+ S     ADV ++A   +E        +G V  F    V    +EK+W   K  Q   +D+R +    +P      +I+ G D +L   P   K+ +    A ++K       +   +     LL++  + L LW+L S      N D L L K +  LL +   G ++I CS +S CG ++ YST+ +  L+ +  E   + L ++ + +P   +    I F+ DS  +   +    LH+V      F++ + F+     ++       L V+ D   +      + + ++ + +  L+    VP+ +  +++    P ++ ++++ S + VFE+   + ++T W   +   G      +    +  +  +P  P  I +   + +   + + ++ + +++T      P T ++   ++   +  K    +K LL     ++  ++ VE P       LP P+K+K++
Sbjct:    1 MGEFKVHRVRFFNYVPSGIRCVAYNNQSN--RLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVA--HSPTA----LISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRLNYEHDNISLKRVSK-MPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQSGTVEAMC---LLAVSPDGNWLAASGTSAGVHVYNVKQ--LKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLH--DAYMFCIIDKSLPLPNDKTLLYNPFPPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDERTLVAVERPLDDIIAQLPPPIKKKKF 684
The following BLAST results are available for this feature:
BLAST of TCONS_00067254-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UTP49.373e-7426.25U3 small nucleolar RNA-associated protein 4 homolo... [more]
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