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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00067317-protein ID=TCONS_00067317-protein|Name=TCONS_00067317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1910bp
MQSPTQKKIKMSTKKIRPVSAKPSVSFGKFDDPTEQRINQDILVTKYLEH
YVTDFKKSNKTNQRSSKNDLHKSPYASHVSLREATSDTFHNRKNTWSPYP
PKSRRPISAPVYKNGNGSISKLDLNSSFTSSGAVSFMSSSVSGLYRQQKP
VYKRKHKILCVQAYVNGTHIRPVRVTAPDLSQLLIECTHKLGLTSAARKL
YLSNGNVVTSPQQLSKDEEIYVSMGEPFKNPVISLQERERLKQSSFWTLN
GIMLPFEENNNRKPSRASTSVTHCMTKLVESQKRRILVFKNGESFGGVEV
VANRFEEFLDDCTKKLSLTSSARHIYDWSGKQVENFNNVPSLDKSLQPTT
GPVLGPLWVSKGERFSPKGAHNFLNTMIQNTKDRIKSTNIYLAKLHEEMA
SENSYFTLAEIEIEIDQEDLTLAGLERALPPLENYLKNIQRLCKEEEASL
TPSSYKFKHISEIDTSSRLLTTPGIKIRLYVNGRKREVGPIKVFVNIADL
KKGTKTQGEVMTRFFDLVNMNPNIRPLFGIKANRVYVKRAFLLNGSEVID
IGLLEPGQELWLSLGEGFLPIEIPIVCMNLDKVKLLSLWGWKQVIQKDLW
MGSDQNQTHPKLWQMIQGVPPQCESQEMKLEMSNPQKIAYLNQCNAERLH
ENRPFLQSKQDHSLVLYPELAFETQGAEEESGDIWGRNIQKWIISPDGTI
CNKHLKGLYIGVLDEEIEMIFKSEETGEEELLEGASVGLRFNNSGGFVNT
QFNGQFRNWIFTHDGYIQPTAFPEYVLTAVDGFTLNSKTSRSANSPTSEH
SEEDSPGHWEIKSRNELIVTEHQSSSSSSSDDSDGEDNHGEDAHYNEPGG
GDKKKKKKKKESKEEEEAITSPKNENNFNPFIDIKDQYGGQNTCMVILPR
FPSNHRLASTQRWGIKCESPEQVQPYLREKWVQQCLTWPADERGNIMESP
TEGYLTYGAPKIKWRSIKSSEATTFSAARNDLPVKLQVLKNGESDINRAV
PVIAPDIRNIKKDINVSGSSAPVNGYGGSVCMTPLDIEFQQFLERCTDAL
NLPFAARRVFTADGKEVLSLTSLEKNDLIYVSCGDNWNNPSLSQADQQKR
LLLASLTSDILKIKKYIALRNCAGFILRMESDIFHRDSKLSLMKVPQDIY
SNQIVAKESDTTYDLLNPNDDATEEREMSAHQRTHARLDARHADVEGVEE
MADRESISHREALFGSNEGVPSTLHEHQTTTCNYKWIYRGEFIQLESNPN
MVIGLQETDASVNLEVVVCKKRFEDPNQRWTFADDGTISLVSNPNLVLTV
ATPSMKDEAFVEEDITTILYDHARLIVTNRKAVVNGNANQIFWLDEETKL
LHAFATDDVNIELTSAIQAAICSYSVFGESTIYQPGYFMKRRDGDRTYTL
TFCEPCGRVIRGKQKLQRITDLRDFKCCMGQQAKKSKIKFKGAFQCLESK
VDLSAHEAETTLTLWESQLHRLREESSVRVIASEITMTQNNPAVRLIIRR
NGEGCSSNGMLLIGNMLSQILDDCTSKLNLPHAARRLYTMDGELITSMQQ
LLKPYYPELTYLRGHQSQTSSPLKVSKELKEGVDVNGQTHSNGSQEHPEQ
EDDGIEQIENLQIEKLDVRVPIDVWVSMGEPFAPLGDVEKAEILSKYEIQ
EKSDAITNLQIQKHRLRHAKGRRLTAFKVDPSPVKSAWVHRTDSEQQIEV
CIDRLKNQLDEVKSHQLNRAKSLNMKKEPSMKLTKKMEKMKLYQMPRALK
IKIFPNGESSEKFQTVFAQNFHQLLENGASKLQLTSCARRVFTHDGIEIF
SLDDVSADQAYCLTCGERFVPYRERRHQIDLKAAYSRINRRTNLTTKSIA
AFPLKGSEVESSPSQASIQILDRKDDNNGTQSTILARKRPPSARPKSARP
NLVLQNIDDW Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0035556 | intracellular signal transduction |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0035556 |
intracellular signal transduction |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 408..428 |
| None | No IPR available | COILS | Coil | Coil | coord: 1455..1475 |
| None | No IPR available | GENE3D | 2.80.10.50 | | coord: 1215..1349
e-value: 1.9E-6
score: 27.5 |
| None | No IPR available | GENE3D | 2.80.10.50 | | coord: 674..824
e-value: 0.06
score: 12.7 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..32 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 58..112 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1584..1603 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1863..1902 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 788..881 |
| IPR003533 | Doublecortin domain | SMART | SM00537 | doub1_11 | coord: 1020..1093
e-value: 0.019
score: 8.5
coord: 1744..1825
e-value: 0.045
score: 4.6 |
| IPR003533 | Doublecortin domain | GENE3D | 3.10.20.230 | | coord: 1737..1830
e-value: 1.7E-16
score: 59.4
coord: 147..242
e-value: 6.8E-16
score: 57.4
coord: 271..373
e-value: 2.8E-14
score: 52.3
coord: 1481..1643
e-value: 1.1E-17
score: 63.3
coord: 972..1101
e-value: 1.1E-20
score: 72.8 |
| IPR003533 | Doublecortin domain | PFAM | PF03607 | DCX | coord: 1039..1085
e-value: 1.3E-7
score: 31.5
coord: 1518..1551
e-value: 9.3E-6
score: 25.6
coord: 177..227
e-value: 1.3E-5
score: 25.2 |
| IPR003533 | Doublecortin domain | PROSITE | PS50309 | DC | coord: 284..343
score: 8.658 |
| IPR003533 | Doublecortin domain | PROSITE | PS50309 | DC | coord: 176..225
score: 8.929 |
| IPR003533 | Doublecortin domain | PROSITE | PS50309 | DC | coord: 1038..1086
score: 11.687 |
| IPR003533 | Doublecortin domain | PROSITE | PS50309 | DC | coord: 1517..1562
score: 9.775 |
| IPR003533 | Doublecortin domain | PROSITE | PS50309 | DC | coord: 1768..1825
score: 9.521 |
| IPR003533 | Doublecortin domain | SUPERFAMILY | 89837 | Doublecortin (DC) | coord: 156..232 |
| IPR003533 | Doublecortin domain | SUPERFAMILY | 89837 | Doublecortin (DC) | coord: 983..1009
coord: 1038..1108 |
| IPR003533 | Doublecortin domain | SUPERFAMILY | 89837 | Doublecortin (DC) | coord: 1484..1552 |
| IPR003533 | Doublecortin domain | SUPERFAMILY | 89837 | Doublecortin (DC) | coord: 1740..1840 |
| IPR003533 | Doublecortin domain | SUPERFAMILY | 89837 | Doublecortin (DC) | coord: 283..338 |
| IPR000772 | Ricin B, lectin domain | PROSITE | PS50231 | RICIN_B_LECTIN | coord: 1233..1346
score: 10.392 |
| IPR000772 | Ricin B, lectin domain | SUPERFAMILY | 50370 | Ricin B-like lectins | coord: 1224..1304 |
Blast
BLAST of TCONS_00067317-protein vs. Swiss-Prot (Human)
Match: DCDC5 (Doublecortin domain-containing protein 5 OS=Homo sapiens GN=DCDC5 PE=2 SV=2) HSP 1 Score: 270.011 bits (689), Expect = 4.735e-77 Identity = 204/671 (30.40%), Postives = 334/671 (49.78%), Query Frame = 0
Query: 983 PVKLQVLKNGESDINRAVPVIAPDIRNIKKDINVSGSSAPVNGYGGSVCMTPLDIEFQQFLERCTDALNLPFAARRVFTADGKEVLSLTSLEKNDLIYVSCGDNWNNPSLSQADQQKRLLLASLTSDILKIKKYIALRNCAGFILRMESDIFHRDSKLSLMKVPQDIYSNQIVAKESDTTYDLLNP--NDDATEEREMSAHQRTHARLDA-----RHADVEGVEEMADRESISHR--EALFGSNEGVP--------STLHEHQTTTCNYKWIYRGEFIQLESNPNMVIGLQETDASVNLEVVVCKKRFEDPNQRWTFADDG-TISLVSNPNLVLTVATPSMKDEAFVEEDITTILYDHARLIVTNRKAVVNGNANQIFWLDEETKLLHAFATDDVNIELTSAIQAAICSYSVFGESTIYQPGYFMKRRDGDRTYTLTFCEPCGRVIRGKQKLQRITDLRDFKCCMGQQAKKSKIKFKGAFQCLE-SKVDLSAHEAETTLTLWESQLHRLREESSVRVIASEITMTQNNPAVRLIIRRNGEGCSSNGMLLIGNMLSQILDDCTSKLNLPHAARRLYTMDGELITSMQQLLKPYYPELTYLRGHQSQTSSPLKVSKELKEGVDVNGQTHSNGSQEHPEQEDDGIEQIENLQIEKLDVRVPIDVWVSMGEPFAP 1634
PV+L+VL+NGE + NR+V ++ PDI +K +CT+ LNLP AARR++ GKE+ +L L++++L+YVSCG+ W NP LS A Q+K++ L +L SDI KI+ + + +L ++SDI SKL++ K P I+ + E + +P ++A+ E + +H R H R+ A R+A E + + +S+ + + LF + E S LH+H C+ ++ YR I + P +V+G+Q + +EVV+ +K+ + +QRW +D T LVSNP+LVL V+ ++E +IV K NG ANQ + + K L AF + ++ E+TSA A +C+ SV E I QPGY DG R L C CG+ +R ++ L+++ F C G + +K + +G F+ + ++VDLS +AE TL+ ++++L LR ++ + + + AV++I +NG+G NG L++ +L +CT +L L AA ++YT DG I +++ L+ E R + Q V KE + V+ N + D ++ I+ + L +R PI +WVS GEPF P
Sbjct: 14 PVRLRVLQNGEKNKNRSVTILGPDISPGRKT-------------------------------QCTEILNLPSAARRLYNEKGKEIFALKDLQRDELVYVSCGELWINPDLSIAQQKKQIFLRNLESDIAKIQIFCSTHKIEALVLEVQSDIV-SGSKLAVHK-PVAIFGEEKQVTEPEEKQMQEDPLTTENASSEI-LDSHVRAHLRMKACHTLPRYAWQETSHDFDEDDSLPKKTEKGLFENVEPQKKHSCSPKHSKLHKH----CHQQFEYRDGQIISHAAPQLVLGVQGPNLRSGMEVVLVEKKSDGSHQRWIHQEDSRTFHLVSNPDLVLAVSMTKTRNEVC-----------GYPVIVQKYKPYNNGAANQKWHYMKNIKALVAFHSTALDKEITSANYAGVCTSSVIKEENIDQPGYCYLSPDGKRKTML--CLACGQSMRTEKGLKQLLPGVPFLCISGTKTQKPFL--QGPFKVISVAEVDLSCDKAEKTLSYYQARLLSLRMKTCTQAASHSGMAATHQKAVKIIAYKNGDG-YRNGKLIVAGTFPMLLTECTEQLGLARAASKVYTKDGTPIFTLRDLVLWALDESFLQRDSEKQKQDAAPVGKE-QIIVEKNPRMKVKNRLFAKSVTSDSLDGIDK-SLLTLILRNPIAIWVSCGEPFLP 628
The following BLAST results are available for this feature:
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