TCONS_00067347-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067347-protein
Unique NameTCONS_00067347-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067347-protein ID=TCONS_00067347-protein|Name=TCONS_00067347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=577bp
MRSDLHNLPNDSSSGSSSPHSNTSHEEPLEMDQASNMLHQKVVYNFSIPE
FINHERIDRDDRERSRAEVRRKRNRLARHQQQHPPQDQRDSEEQSEDREP
SERIEIQDSPVIVHATKKRRRAAAAVEEDDGDDDCHRRRQHVPVIDLTGD
HDSPHSDTEGRTNSRSSLYRPYRDRHGFGQLFSDFERSHYLSRDRHERLN
RFFYRSPSMQRLHRMQQLRRRHETHRHSHRLAGEDILFPERSVRENERTT
NEEPHEGTNADDSVLIVNEVRGTTDLSRPTLEDDEPTFPPNLSSRPDPMQ
PPHGPHSSLDLIEDRLRILRERRQMHEAMTRVNPIDSVREREEIAQPSSG
VHERMGLRNRNRPTNNNRESNEGTANESRANEEEQRPRENLRQSERNMTA
RMTASDNLNQEAADNGGEVEFIGEWNVRNSPASRQRHIPPSLLPFQLGHP
LHLPFASSEHRHHFLRFLPTVTPPRLHHLYQENYEALLNLADTLGPGKPR
GLDKTEIERIPSFRFSSNTAKETNVKCVVCISEYTNREKLRRLPCSHDFH
AKCIDKWLKSNKTCPVCRDEVKVTSAE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042084XLOC_042084Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067347TCONS_00067347Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 62..82
NoneNo IPR availableCOILSCoilCoilcoord: 309..329
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 336..396
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..309
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 526..573
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 527..567
e-value: 1.6E-7
score: 41.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 526..568
e-value: 1.1E-13
score: 51.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 527..568
score: 13.168
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 526..571
e-value: 7.2827E-13
score: 62.8484
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 502..576
e-value: 1.7E-20
score: 71.7

Blast
[Close]
BLAST of TCONS_00067347-protein vs. Swiss-Prot (Human)
Match: RNF38 (E3 ubiquitin-protein ligase RNF38 OS=Homo sapiens GN=RNF38 PE=1 SV=4)

HSP 1 Score: 128.642 bits (322), Expect = 9.548e-32
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 0 
Query:  482 ENYEALLNLADTLGPGKPRGLDKTEIERIPSFRFSSNTAKETNVKCVVCISEYTNREKLRRLPCSHDFHAKCIDKWLKSNKTCPVCRDEV 571
            ENYEALLNLA+ LG  KPRGL K +IE++PS+RF+ N  +     CVVC+ ++ +R+ LR LPC+H+FHAKC+DKWLK+N+TCP+CR + 
Sbjct:  418 ENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 507
The following BLAST results are available for this feature:
BLAST of TCONS_00067347-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF389.548e-3257.78E3 ubiquitin-protein ligase RNF38 OS=Homo sapiens ... [more]
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