TCONS_00067825-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067825-protein
Unique Name	TCONS_00067825-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	265

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067825-protein ID=TCONS_00067825-protein|Name=TCONS_00067825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MSNLEELQSVEARQCSNLETLLEELKNKCEEKQDTVEEISSAFIKFKYDT
AKESISTRTGKPIPVKDLEQYQMAEQKKENEVIAVRLENIKLKNRLKKRE
QQLKAKEELAEGLHLIDFEQLKIENQTYNEKIEERNEELLKLRKKINSTV
QVLTHLKEKLQHVQGENGEQRTNLRDIEVTVAHKRDLLTRLKQARDSLRF
DNTKLKHKAGLLGNKPLLRDFEERKDESEELRNRLANLRQNHMELNINLT
TIRKKIDNVKTIDMQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042358	XLOC_042358	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067825	TCONS_00067825	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR025254	DUF4201

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 218..255
None	No IPR available	COILS	Coil	Coil	coord: 89..109
None	No IPR available	COILS	Coil	Coil	coord: 118..149
None	No IPR available	COILS	Coil	Coil	coord: 15..42
None	No IPR available	GENE3D	1.20.1170.10		coord: 1..262 e-value: 4.5E-5 score: 22.0
IPR025254	Domain of unknown function DUF4201	PFAM	PF13870	DUF4201	coord: 75..248 e-value: 1.3E-47 score: 161.6

Blast

[Close]

BLAST of TCONS_00067825-protein vs. Swiss-Prot (Human)
Match: CCD96 (Coiled-coil domain-containing protein 96 OS=Homo sapiens GN=CCDC96 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 4.180e-63
Identity = 121/265 (45.66%), Postives = 170/265 (64.15%), Query Frame = 0

Query:    1 MSNLEELQSVEARQCSNLETLLEELKNKCEEKQDTVEEISSAFIKFKYDTAKESIST---RTGKPIPVKDLEQYQMAEQKKENEVIAVRLENIKLKNRLKKREQQLKAKEELAEGLHLIDFEQLKIENQTYNEKIEERNEELLKLRKKINSTVQVLTHLKEKLQHVQGENGEQRTNLRDIEVTVAHKRDLLTRLKQARDSLRFDNTKLKHKAGLLGNKPLLRDFEERKDESEELRNRLANLRQNHMELNINLTTIRKKIDNVKTI 262
            +  LEEL+  +A         L +LK +C+EK   VE+    F   K     +++ +   R G+   ++++EQ Q  E KKE E+ AVRLENI+LK  L   E +++ +E+L +GL LIDFEQLKIENQT+NEKIEERNEELLKLR K+ ++VQV+TH+KEKL  +  EN  ++T L +IE   A  RD+LT+ KQAR+ LR DN +L  K GLLG   LLRD EE+ D++E L  RL +L+++H  L ++   +R+KI   K  
Sbjct:  288 LGMLEELKKQQADDLQWYHQELGQLKRQCQEKLTRVEKEWRRFQALKKQVVMQAMGSCRMRGGRQAALREVEQIQALEDKKEKEMSAVRLENIQLKQSLVHFETRMRTQEDLTQGLLLIDFEQLKIENQTFNEKIEERNEELLKLRSKVTNSVQVITHVKEKLHFMDMENACKKTQLAEIEAQAALGRDILTKTKQAREGLRTDNIRLNQKCGLLGKDSLLRDLEEKVDKTELLHRRLESLKRHHASLTLSCRGVRQKIREAKAF 552

The following BLAST results are available for this feature:

BLAST of TCONS_00067825-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067825-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CCD96	4.180e-63	45.66	Coiled-coil domain-containing protein 96 OS=Homo s...	[more]

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TCONS_00067825-protein (polypeptide) - C. hemisphaerica