TCONS_00068232-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068232-protein
Unique NameTCONS_00068232-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length117

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068232-protein ID=TCONS_00068232-protein|Name=TCONS_00068232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
NEKTKEHEPISPCSICNATFIHAKRRTEHINRCSKTFPCQECELVFESSQ
ALKARENKHNQKFMCDRPGCGKCFECASKLSRHQETHKKSKDFICPVCSK
RFSQKDNMVNHQKTKHK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042592XLOC_042592Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068232TCONS_00068232Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 11..31
e-value: 250.0
score: 0.8
coord: 37..59
e-value: 68.0
score: 5.9
coord: 63..87
e-value: 0.33
score: 20.0
coord: 93..116
e-value: 2.4E-4
score: 30.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 65..87
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 95..116
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 93..117
score: 11.552
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 63..92
score: 12.237
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 63..114
NoneNo IPR availableGENE3D2.20.28.30coord: 48..74
e-value: 2.9E-8
score: 33.4
NoneNo IPR availablePFAMPF13912zf-C2H2_6coord: 36..52
e-value: 0.009
score: 15.9
NoneNo IPR availableGENE3D3.30.160.60coord: 75..116
e-value: 7.0E-14
score: 51.4
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 93..116
e-value: 1.1E-5
score: 25.5
NoneNo IPR availableGENE3D3.30.160.60coord: 7..47
e-value: 1.8E-5
score: 24.3

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068232-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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