TCONS_00068539-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068539-protein
Unique NameTCONS_00068539-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068539-protein ID=TCONS_00068539-protein|Name=TCONS_00068539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=607bp
MKNFEYLFFLATILLVIKVTHGEITSVGREETIDHGQNATFTCDTDDGKP
VYWRQYLVNITDDMPRFVLESNTLTIIGKGIGVFGNYTCFTDDDERKFAL
FVNFKNPLNLARNHTIMIGQTTQEIQMSVSSYPEITNVFWTNGRNTYDVS
TDRYTLKNTTIDNGGFSYYQTYRLNIQKLDESDIGDFLLNYKFQGKDFQD
LAARLVKGGCYEPLTKCRAEDKCISQERICDNKQDCSDFSDEDNCNIPSI
VIDKVLNKGFTEFTVTYRFSDQSSNQKTWFTIQYNVTTSDNKELIVSDTT
YHYQVLNYPSNLVIKGVRNSTTYNISMRVETVSGEEGATTTTSFQVPVPE
KPVIPEASWINHRNYSTIRIRLNEFSPSWLSYIVTYSLFSNGTQIGNSVV
SFLPNGKPTYISLGAGALKNGTTYQIVITAKTDAGLAEPKIINYTIPRMA
LPGPVLNLKVGKVTPTKDYVWLQLWFDRPTDDGQDGSPSLSGKLKYCEVQ
SNDDLLNCKEDTVFIVDDGKKAVSPLKEKTKYYFEITLKNKLDQYGAAVG
EYYTTPSYTSTSSGGLSGGAIAGIVCGCLGALLIAIGACWKKNQSSNDPG
SVSYSKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042745XLOC_042745Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068539TCONS_00068539Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR002172LDrepeatLR_classA_rpt
IPR013783Ig-like_fold
IPR023415LDLR_class-A_CS
IPR007110Ig-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 452..546
e-value: 0.13
score: 21.3
coord: 352..437
e-value: 48.0
score: 5.6
coord: 248..336
e-value: 65.0
score: 4.4
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 354..541
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 209..247
e-value: 0.0016
score: 27.7
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 209..246
score: 11.062
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 209..247
NoneNo IPR availableGENE3D4.10.400.10coord: 206..234
e-value: 1.9E-6
score: 27.5
NoneNo IPR availableGENE3D4.10.1220.10coord: 235..291
e-value: 5.3E-9
score: 35.4
NoneNo IPR availableGENE3D1.20.5.510coord: 558..591
e-value: 3.0E-5
score: 23.3
NoneNo IPR availableCDDcd00112LDLacoord: 222..245
e-value: 4.29198E-7
score: 46.0458
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 102..196
e-value: 0.031
score: 13.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 22..98
e-value: 0.01
score: 15.6
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 380..557
e-value: 3.9E-9
score: 36.1
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 223..245
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 26..93

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068539-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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