TCONS_00070291-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070291-protein
Unique NameTCONS_00070291-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length349

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070291-protein ID=TCONS_00070291-protein|Name=TCONS_00070291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
MQIFVKTLTGKTLALKCDPNYTIHDCQCQIQDMEGIPPSAQRLIFTGKQL
EVHHKLIDYGIKKEDTLHLVLRLRGMISNFSEYDVTDPVTAFLMKGDITG
VEISDELLKEKRKSIPNSAEYSKLKMEYTHESIMSENQRKKLLGVADYIH
SLQQIRRKPQQVLQDIKIILPDGVINEITLVRCIEKILKSHHPSNSGLKL
VLRRTCPTEGCLPWHVDGSYSQGVVQYTLNSDNEYTGGRLCYYTDDVGLF
VPQRSAGTLSIHQREIHAVTKLLSGVRYVLFVVDGTNDLGGSDANIVKLR
PKLLAKMKSSMELLDCDSDDEDDESDTRSNKRDQKEDPTPSRAKRARKN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043773XLOC_043773Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070291TCONS_00070291Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956UbiquitinPRINTSPR00348UBIQUITINcoord: 53..74
score: 64.76
coord: 11..31
score: 32.72
coord: 32..52
score: 72.89
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 1..72
e-value: 6.3E-16
score: 68.9
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 3..74
e-value: 3.5E-20
score: 71.4
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 1..76
score: 20.871
NoneNo IPR availableGENE3D3.10.20.90coord: 1..82
e-value: 1.4E-29
score: 101.1
NoneNo IPR availableGENE3D2.60.120.620coord: 103..283
e-value: 3.6E-5
score: 23.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 314..349
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 1..75

Blast
[Close]
BLAST of TCONS_00070291-protein vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.102e-26
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTLALKCDPNYTIHDCQCQIQDMEGIPPSAQRLIFTGKQLEVHHKLIDYGIKKEDTLHLVLRLRGMISNF 80
            MQIFVKTLTGKT+ L+ +P+ TI + + +IQD EGIPP  QRLIF GKQLE    L DY I+KE TLHLVLRLRG +  F
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80

HSP 2 Score: 104.76 bits (260), Expect = 2.102e-26
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTLALKCDPNYTIHDCQCQIQDMEGIPPSAQRLIFTGKQLEVHHKLIDYGIKKEDTLHLVLRLRGMISNF 80
            MQIFVKTLTGKT+ L+ +P+ TI + + +IQD EGIPP  QRLIF GKQLE    L DY I+KE TLHLVLRLRG +  F
Sbjct:   77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 156

HSP 3 Score: 103.605 bits (257), Expect = 5.870e-26
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 0 
Query:    1 MQIFVKTLTGKTLALKCDPNYTIHDCQCQIQDMEGIPPSAQRLIFTGKQLEVHHKLIDYGIKKEDTLHLVLRLRG 75
            MQIFVKTLTGKT+ L+ +P+ TI + + +IQD EGIPP  QRLIF GKQLE    L DY I+KE TLHLVLRLRG
Sbjct:  153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 227
The following BLAST results are available for this feature:
BLAST of TCONS_00070291-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBB2.102e-2663.75Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1[more]
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