TCONS_00070817-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070817-protein
Unique NameTCONS_00070817-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length168

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070817-protein ID=TCONS_00070817-protein|Name=TCONS_00070817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MVIIIPKRKTNLFYRYRRNKVYNIMTACDRSTAQRTPLKCYGCKKRIRSR
FYVDFMGSPWHENCLRCDVCEEILFSFGSGKCYCRDGQKLCLMDYIKLYG
KTGTCSRCKLVISPTEKVMKCKGFTYHQQCFHCSICKRYFDKGEIVRIPN
EGTIVCSLHQHCGTVFNT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044055XLOC_044055Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070817TCONS_00070817Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 39..94
e-value: 1.8E-8
score: 44.2
coord: 104..159
e-value: 4.1E-9
score: 46.3
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 40..98
e-value: 1.2E-11
score: 44.5
coord: 105..158
e-value: 3.9E-9
score: 36.5
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 40..74
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 105..140
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 38..101
score: 12.316
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 103..168
score: 11.197
NoneNo IPR availableGENE3D2.10.110.10coord: 27..100
e-value: 3.3E-12
score: 45.7
NoneNo IPR availableGENE3D2.10.110.10coord: 101..167
e-value: 1.0E-10
score: 41.3
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 35..65
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 66..137

Blast
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BLAST of TCONS_00070817-protein vs. Swiss-Prot (Human)
Match: LMO4 (LIM domain transcription factor LMO4 OS=Homo sapiens GN=LMO4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.705e-23
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 0 
Query:   39 KCYGCKKRIRSRFYVDFMGSPWHENCLRCDVCEEILFSFGSGKCYCRDGQKLCLMDYIKLYGKTGTCSRCKLVISPTEKVMKCKGFTYHQQCFHCSICKRYFDKGE 144
            +C GC  +I  RF +  M S WH  CL+C  C+  L   G+  CY + G  LC  DYI+L+G +G CS C   I  +E VM+ +G  YH +CF CS C+     G+
Sbjct:   22 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGT-SCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGD 126
The following BLAST results are available for this feature:
BLAST of TCONS_00070817-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LMO43.705e-2340.57LIM domain transcription factor LMO4 OS=Homo sapie... [more]
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