TCONS_00071212-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071212-protein
Unique NameTCONS_00071212-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071212-protein ID=TCONS_00071212-protein|Name=TCONS_00071212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=552bp
MSSDEEDGPQLKKQRLFYGSLEDQERERILREEKAAQELLRAQGSESSEE
SSDDEDSKKKKKKRKKKNQESDGESDSDEDTAVDRAMKAGNINIGDVETM
EMTPDAKAEHQQELMAQFEKRKIIKSITVSTDDKAVKARLRELGHPICLF
GEGPAQRRDRLRDLLSVFEQLLPGFTATKEESEEEEEADAPEEVWYHEGT
EELKASRLFMAKYSVPRARDRLIQAKKDLKMPETEKLKKSQEVQRKMRAL
INFCSQIGDNRPLSYCNLSPNGKLLATGSWSGLCKLWSLPDGNEVRTLKG
HNERVGAIVFHPQSTISLESSAANMVSCGVDGVVQLWNLEDDAPIGKIEG
HEERVSSLAFHPSGRFLGTSCFDKSWRLWDLEQQTEVLHQEGHGKEVYKI
CFQQDGALAVTGGYDARGLVWDLRTGRNVFSLDGHLKRVLAVDFHSNGYQ
VATGSEDQKCMIWDLRQQKSIYTIPAHNNLISHLKFCNNFLVTASFDGEA
KVWSYPTWTPLKTLSGHEQKVTCVDVTQDENFIVTTSFDRTFKLWGPEFL
VC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044267XLOC_044267Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071212TCONS_00071212Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR014906PRP4-like
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 291..338
e-value: 0.0013
score: 28.1
coord: 247..288
e-value: 0.13
score: 21.3
coord: 507..546
e-value: 3.0E-8
score: 43.4
coord: 467..504
e-value: 1.1E-4
score: 31.6
coord: 425..464
e-value: 1.5E-8
score: 44.4
coord: 383..422
e-value: 0.04
score: 23.1
coord: 341..380
e-value: 1.5E-8
score: 44.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 426..464
e-value: 8.6E-7
score: 29.5
coord: 292..338
e-value: 9.1E-4
score: 19.9
coord: 388..422
e-value: 0.032
score: 15.0
coord: 344..380
e-value: 4.9E-5
score: 23.9
coord: 268..288
e-value: 0.067
score: 14.0
coord: 508..545
e-value: 1.7E-6
score: 28.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 390..431
score: 12.28
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 432..473
score: 14.519
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 474..513
score: 9.706
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 514..545
score: 12.747
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 256..297
score: 8.804
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 348..389
score: 14.452
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 298..347
score: 9.272
IPR014906Pre-mRNA processing factor 4 (PRP4)-likeSMARTSM00500pr04_2coord: 131..181
e-value: 8.8E-15
score: 65.1
IPR014906Pre-mRNA processing factor 4 (PRP4)-likePFAMPF08799PRP4coord: 136..164
e-value: 2.5E-15
score: 55.6
IPR014906Pre-mRNA processing factor 4 (PRP4)-likeSUPERFAMILY158230PRP4-likecoord: 113..166
NoneNo IPR availableGENE3D2.130.10.150coord: 341..428
e-value: 9.8E-26
score: 90.3
NoneNo IPR availableGENE3D2.80.10.50coord: 308..340
e-value: 1.5E-7
score: 31.0
NoneNo IPR availableGENE3D2.80.10.50coord: 220..307
e-value: 2.3E-13
score: 49.5
NoneNo IPR availableGENE3D2.40.50.140coord: 429..464
e-value: 4.2E-14
score: 51.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..82
NoneNo IPR availableCDDcd00200WD40coord: 266..545
e-value: 2.38826E-74
score: 239.159
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 465..550
e-value: 1.1E-24
score: 86.5
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 451..465
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 325..339
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 367..381
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 256..552
score: 60.507
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 255..545

Blast
[Close]
BLAST of TCONS_00071212-protein vs. Swiss-Prot (Human)
Match: PRP4 (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2)

HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0
Identity = 270/554 (48.74%), Postives = 364/554 (65.70%), Query Frame = 0 
Query:    2 SSDEEDGPQLKKQRLFYGSLEDQERERILREEKAAQELLRAQGSESSEESSDDEDSKKKKKKRKKKNQESDGESDSDEDTAVDRAMKAGNINIGDVETMEMTPDAKAEHQQELMAQFEKRKIIKSITVSTDDKAVKARLRELGHPICLFGEGPAQRRDRLRDLLSVFEQLLPGFTATKEESEEEEEADAP----EEVWYHEGTEELKASRLFMAKYSVPRARDRLIQAKKDLKMPETEKLKKSQEVQRKMRALINFCSQIGDNRPLSYCNLSPNGKLLATGSWSGLCKLWSLPDGNEVRTLKGHNERVGAIVFHPQSTISLESSAANMVSCGVDGVVQLWNLEDDAPIGKIEGHEERVSSLAFHPSGRFLGTSCFDKSWRLWDLEQQTEVLHQEGHGKEVYKICFQQDGALAVTGGYDARGLVWDLRTGRNVFSLDGHLKRVLAVDFHSNGYQVATGSEDQKCMIWDLRQQKSIYTIPAHNNLISHLKF---CNNFLVTASFDGEAKVWSYPTWTPLKTLSGHEQKVTCVDVTQDENFIVTTSFDRTFKLWGPE 548
            + D+   P +KK  ++YGSLE++ERER+ +                                         GES       +   ++AGNINI   E  E+  +  +E Q E++A+FE+RK  + I VSTDD  VKA LR LG PI LFGEGPA+RR+RLR++LSV      G  A K+  +++E++       ++ WYHEG   LK +RL++A YS+PRA  RL +A+   ++PET +  + QE+ + +R+L NFCSQIGD+RP+SYC+ SPN K+LAT  WSGLCKLWS+PD N + TL+GHN  VGAIVFHP+ST+SL+    N+ SC  DG V+LW+L+ D P+  IEGH  RV+ + +HPSGRFLGT+C+D+SWRLWDLE Q E+LHQEGH   VY I F QDG+LA TGG DA G VWDLRTGR +  L+GHLK +  ++F  NGY +ATGS D  C +WDLRQ++ +YTIPAH NL++ +KF     NFL+T ++D  AK+W++P W+PLKTL+GHE KV  +D++ D   I T S+DRTFKLW  E
Sbjct:   16 APDDLVAPVVKKPHIYYGSLEEKERERLAK-----------------------------------------GESGILGKDGLKAGIEAGNINITSGEVFEIE-EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVV-----GTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE 522
The following BLAST results are available for this feature:
BLAST of TCONS_00071212-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRP40.000e+048.74U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo... [more]
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