TCONS_00071421-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071421-protein
Unique NameTCONS_00071421-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071421-protein ID=TCONS_00071421-protein|Name=TCONS_00071421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
KKRKANNKNIMGQSQSTQQGGRPREFSKTVDDLEFNVPDISKKIKTGDEF
EDSSVTTTEEHLIKVQDDGGSGYIVADEERPVQKKTVPVVFHWEHGGDEV
FLSGSFNDWKTKVPMTKSGNEHTAIIELPSGTHEFKYYVDGNWLHDPGQT
INDHFDGRNNVITVSDSDFDFTKALMTDETDEKKQHTASFDSSTGGTSPS
GSYSKRIPHHGGVHISTHNSESSHPPSLPPHLLNVILNKETEQEDPTMLP
VPHHVALNHLYALSIKDSVMTLSGTHRYKRKYVTTVLYKPVVLK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044366XLOC_044366Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071421TCONS_00071421Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006828ASC_dom
IPR032640AMPK1_CBM
IPR013783Ig-like_fold
IPR014756Ig_E-set
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006828Association with the SNF1 complex (ASC) domainSMARTSM01010AMPKBI_2coord: 196..291
e-value: 4.6E-38
score: 142.5
IPR006828Association with the SNF1 complex (ASC) domainPFAMPF04739AMPKBIcoord: 223..290
e-value: 3.4E-26
score: 91.2
IPR032640AMP-activated protein kinase, glycogen-binding domainPFAMPF16561AMPK1_CBMcoord: 87..169
e-value: 3.9E-28
score: 97.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 77..172
e-value: 2.6E-23
score: 81.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..231
NoneNo IPR availableCDDcd02859E_set_AMPKbeta_like_Ncoord: 88..164
e-value: 4.37092E-30
score: 108.84
NoneNo IPR availableSUPERFAMILY160219AMPKBI-likecoord: 209..291
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 85..165

Blast
[Close]
BLAST of TCONS_00071421-protein vs. Swiss-Prot (Human)
Match: AAKB2 (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.244e-63
Identity = 108/221 (48.87%), Postives = 138/221 (62.44%), Query Frame = 0 
Query:   75 VADEERPVQKKTVPVVFHWEHGGDEVFLSGSFNDWKTKVPMTKSGNEHTAIIELPSGTHEFKYYVDGNWLHDPGQ-TINDHFDGRNNVITVSDSDFDFTKALMTDETDEKKQHTASFDSSTGGTSPSGSYSKRIPHHGGVHISTHNSESSH--PPSLPPHLLNVILNKETE-QEDPTMLPVPHHVALNHLYALSIKDSVMTLSGTHRYKRKYVTTVLYKPV 291
            + D  +P Q+   P V  W  GG EVF+SGSFN+W TK+P+ KS N+  AI++LP G H++K++VDG W+HDP +  +       NN+I V  SDF+   AL  D  +  +  T+  D S   +SP G Y        G  +    SE     PP LPPHLL VILNK+T    DP +LP P+HV LNHLYALSIKDSVM LS THRYK+KYVTT+LYKP+
Sbjct:   66 LEDSVKPTQQAR-PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSE--TSCRDLS---SSPPGPY--------GQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI 272
The following BLAST results are available for this feature:
BLAST of TCONS_00071421-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AAKB22.244e-6348.875'-AMP-activated protein kinase subunit beta-2 OS=... [more]
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