TCONS_00071916-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071916-protein
Unique NameTCONS_00071916-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071916-protein ID=TCONS_00071916-protein|Name=TCONS_00071916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
PDETSAASLNPMDHDDYFNVKSLVDMKEMFDARVHLGHHEGTWDPLTRPY
IHGMRSTQYIIDLEKSVECLQCALNVLSHIVYQKGIVLFITTNPRFDHLI
QKTARNSGEYFITRAWHKGLFNNASTMLGTDRLPDLIISFNNSRFERVRE
AITEAAMCNIPVIGLIDTDCDPRLVTYPVPGNDDTLDSMKYFCTIFEKTI
LNAKQRLTKDEGVEQETSVDKTNDEVEPRERHEGRS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044654XLOC_044654Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071916TCONS_00071916Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001865Ribosomal_S2
IPR005706Ribosomal_S2_bac/mit/plastid
IPR018130Ribosomal_S2_CS
IPR023591Ribosomal_S2_flav_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001865Ribosomal protein S2PRINTSPR00395RIBOSOMALS2coord: 154..165
score: 48.21
coord: 175..189
score: 36.72
coord: 107..124
score: 24.36
coord: 26..44
score: 32.79
coord: 57..66
score: 40.31
IPR001865Ribosomal protein S2PFAMPF00318Ribosomal_S2coord: 29..129
e-value: 2.0E-23
score: 82.7
coord: 131..202
e-value: 3.1E-17
score: 62.5
IPR001865Ribosomal protein S2CDDcd01425RPS2coord: 29..201
e-value: 1.49065E-61
score: 192.797
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidTIGRFAMTIGR01011TIGR01011coord: 24..127
e-value: 7.2E-24
score: 82.2
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidHAMAPMF_00291_BRibosomal_S2_Bcoord: 22..204
score: 14.927
NoneNo IPR availableGENE3D3.40.50.10490coord: 25..229
e-value: 2.5E-58
score: 196.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..236
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00962RIBOSOMAL_S2_1coord: 26..37
IPR023591Ribosomal protein S2, flavodoxin-like domainSUPERFAMILY52313Ribosomal protein S2coord: 26..214

Blast
[Close]
BLAST of TCONS_00071916-protein vs. Swiss-Prot (Human)
Match: RT02 (28S ribosomal protein S2, mitochondrial OS=Homo sapiens GN=MRPS2 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.648e-59
Identity = 95/218 (43.58%), Postives = 137/218 (62.84%), Query Frame = 0 
Query:   11 PMDHDDYFNVKSLVDMKEMFDARVHLGHHEGTWDPLTRPYIHGMRSTQYIIDLEKSVECLQCALNVLSHIVYQKGIVLFITTNPRFDHLIQKTARNSGEYFITRAWHKGLFNNASTMLG-TDRLPDLIISFN--NSRFERVREAITEAAMCNIPVIGLIDTDCDPRLVTYPVPGNDDTLDSMKYFCTIFEKTILNAKQRLTKDEGVEQETSVDKTNDE 225
            P+ H D+FNVK L  ++ +FDARVHLGH  G       PYI G R    IIDLE++   LQ ALN  +H+ Y+KGI+LFI+ N +F +LI+  AR+ GEY  TR +  G+  NA  + G T RLPDLII  +  N+ FE    A+ +AA  NIP +G++DT+C+P L+TYPVPGNDD+  ++  +C +F+  I  AK++  + E + +     +  D+
Sbjct:   66 PLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFE-PHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDSPLAVHLYCRLFQTAITRAKEKRQQVEALYRLQGQKEPGDQ 282
The following BLAST results are available for this feature:
BLAST of TCONS_00071916-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RT023.648e-5943.5828S ribosomal protein S2, mitochondrial OS=Homo sa... [more]
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