TCONS_00071932-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071932-protein
Unique NameTCONS_00071932-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length203

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071932-protein ID=TCONS_00071932-protein|Name=TCONS_00071932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MLDYMMEMSEEFGTNVKRPAFSIDSILSQKMSEDSTTVGKTDENFNDSLP
TLTRRYSSADDSYTKCSCDKCDHSNNQLRVNLHGNSLEDDFENRSFTTSP
TRFNREDIDEDLNLKYSKYFNDIDDTSNRYSKRRRTIFTSSQLERLEFEF
QQQQYIVGQERRFLARQLGLNEIQVKVWFQNRRIKWRKLTHGSISSVIPE
LSL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044663XLOC_044663Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071932TCONS_00071932Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000047HTH_motif
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000047Helix-turn-helix motifPRINTSPR00031HTHREPRESSRcoord: 169..185
score: 61.34
coord: 160..169
score: 48.93
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 131..193
e-value: 1.7E-22
score: 90.7
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 132..188
e-value: 1.6E-20
score: 72.5
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 129..189
score: 20.309
NoneNo IPR availableGENE3D1.10.10.60coord: 123..196
e-value: 1.5E-22
score: 78.6
NoneNo IPR availableCDDcd00086homeodomaincoord: 132..188
e-value: 7.69121E-20
score: 78.8244
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 164..187
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 127..190

Blast
[Close]
BLAST of TCONS_00071932-protein vs. Swiss-Prot (Human)
Match: VAX1 (Ventral anterior homeobox 1 OS=Homo sapiens GN=VAX1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.199e-18
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 0 
Query:  132 KRRRTIFTSSQLERLEFEFQQQQYIVGQERRFLARQLGLNEIQVKVWFQNRRIKWRK 188
            KR RT FT+ QL RLE EFQ+ QY+VG+ER  LARQL L+E QVKVWFQNRR K +K
Sbjct:  101 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK 157
The following BLAST results are available for this feature:
BLAST of TCONS_00071932-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VAX11.199e-1868.42Ventral anterior homeobox 1 OS=Homo sapiens GN=VAX... [more]
back to top