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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000020 ID=TCONS_00000020|Name=TCONS_00000020|organism=Clytia hemisphaerica|type=transcript|length=3407bpRun BLAST on NCBI protein sequence of TCONS_00000020-protein >TCONS_00000020-protein ID=TCONS_00000020-protein|Name=TCONS_00000020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1076bp NRGNKLNKTTYKMKATNLSNSINMSSPLHHFREKNDEKAVNMLSMMKDKSRun BLAST on NCBI transcript from alignment at sc0000001:500943..520408+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000020 ID=TCONS_00000020|Name=TCONS_00000020|organism=Clytia hemisphaerica|type=transcript|length=19466bp|location=Sequence derived from alignment at sc0000001:500943..520408+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:500943..520408+ >TCONS_00000020 ID=TCONS_00000020|Name=TCONS_00000020|organism=Clytia hemisphaerica|type=CDS|length=3231bp|location=Sequence derived from alignment at sc0000001:500943..520408+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000020 vs. Swiss-Prot (Human)
Match: PASK (PAS domain-containing serine/threonine-protein kinase OS=Homo sapiens GN=PASK PE=1 SV=3) HSP 1 Score: 318.931 bits (816), Expect = 1.820e-90 Identity = 163/351 (46.44%), Postives = 228/351 (64.96%), Query Frame = 2
Query: 2207 ILEKDKGDLSKIYPGQYYGQARHKDGSMLPILFEIXXXXXXXXXXXXXXGQLFCLWMSRDPDEETETYGTEKHKQLLASF----NSTMTISTG-NFQEMLKE-------IQDMKLEDPGS--GLYNDKFNTARCIGKGAFGFVNLAERKSDNEQVVVKFIRKEKVLKDSWIDDASIGRTPYEVHLLSKLQHPNVVKVLEVYENDCYVHMVMEKHGDGIDLFEFIDRKPLMDEALASYMFRQVLSATDYLHQNKILHRDIKDENIIVDRSFHLKLIDFGSAAPLEKDKYFTTFCGTIEYCSPEVLLGNSYRGPELEMWSLGVTLYTFIFGEHPFFEVEDSIRAELFPPFKVS 3217
++ G +I G Y G H+DG L I FE+++ + LFC W+ +D ++ + + LAS +ST TG + E+L+ + ++LE + G Y+ K++T +G GAFGFV A K N++VVVKFI+KEKVL+D WI+D +G+ E+ +LS+++H N++KVL+++EN + +VMEKHG G+DLF FIDR P +DE LASY+FRQ++SA YL I+HRDIKDENI++ F +KLIDFGSAA LE+ K F TFCGTIEYC+PEVL+GN YRGPELEMWSLGVTLYT +F E+PF E+E+++ A + PP+ VS
Sbjct: 878 VMRGAAGLQREIQEGAYSGSCYHRDGLRLSIQFEVRRVELQGPT------PLFCCWLVKD-LLHSQRDSAARTRLFLASLPGSTHSTAAELTGPSLVEVLRARPWFEEPPKAVELEGLAACEGEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETVEAAIHPPYLVS 1221 HSP 2 Score: 192.2 bits (487), Expect = 1.507e-49 Identity = 99/280 (35.36%), Postives = 163/280 (58.21%), Query Frame = 2
Query: 488 PTQAIVTINARTSRILITNETACDLFGYTDEELCGKHMKVSQLFTMEDGVKQNVLIEQNIDKEGNIVMVSGKVLEATNKKGDIFMVSVWMKRIQAGSDVRCVLIMEPVDVNKGSFLFDAAGTISDCDFTFALLHGYEDPQDLIGKNIDTFVPSFQLPSPGQVLSKDIKKQRVTSRTKDLVPFPSTIKVRIHDPEFHQLYMERTAENKRQMSKFLYKGFLWVFSNVSGLMTIDNKGLVTSCNENFLRIFLGYFESELMGKEITTLIPYFYEQIDMLHHGSI 1327
P +AI T++A+T+ IL+ N+ AC L GY+ ++L G+ K++Q F D L E++++ +G+ +V G V++ ++ G+ VSVWMKR++ + CV+++EPV+ F + GT++ CD FA LHGY +D+ G++I +PS QLP GQ + K++K QR R +D FP ++K++ P E T +S Y+ +WVF +SGL+T+ G + N +F GY ++EL+GK IT LIP FY +D+ ++ S+
Sbjct: 130 PNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQ--KLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSGEKIPVSVWMKRMRQERRLCCVVVLEPVERVSTWVAFQSDGTVTSCDSLFAHLHGYVSGEDVAGQHITDLIPSVQLPPSGQHIPKNLKIQRSVGRARDGTTFPLSLKLK-SQPSSE----EATTGEAAPVSG--YRASVWVFCTISGLITLLPDGTIHGINHSFALTLFGYGKTELLGKNITFLIPGFYSYMDLAYNSSL 400 The following BLAST results are available for this feature:
BLAST of TCONS_00000020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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