TCONS_00000086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000086
Unique NameTCONS_00000086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000086 ID=TCONS_00000086|Name=TCONS_00000086|organism=Clytia hemisphaerica|type=transcript|length=1807bp
AAAACACACGAGGTTCCAAAAAACTTCCATTTTGTAGAGTTTAGATCACC
TAACGGCATCAATATTAAACCAGCTCAGAGAATTATTATGGAGaccaaTT
TAACAGTTGATGGTTCATCCTCATCGATATACAACGCGCTCCCTATATTC
AGGCTTGGATTAAGTTTCACTGCAGAGACCATCCTTACACCATACAAAGA
TAAAGAAATTCGGTTTTCGGATGGAAATTATAgaataaacaaaagaatga
tGACATTCCCAGTCCACAAAAATCCAAGAATTCCAACGGAATATATGGGA
ACTGCATATTTCGTCATCTGGTTTGGTTTGGGACCACTAGTGGCAAGATA
TCCAAATGCAACAAATGTCACGTTATCAGCATTCAAGATCAGTTACTTGG
AGTGTCCGCCACAAACACATAACTTGGTAAAGTATAAATCAAGTATTCCA
GCCCCGGCAAACAAAGGACGGTTTAATTACCAATATGGTGTTTGTGTACG
AAATGCAGTACCGTTGGATCCGCATATGTCCTTCTTGAGAACCTGTGATT
ATGAAGGGAAATCTCGTGTTAATGTTAGATGCGTTTGCAAAAGAGGCTTC
TGGTTTGACAGAACAAATCAGCAATGTAAATTGTGCGGAGAAGGTTTCTA
CAAATCCAAAAAAGGCAACACCCAATGCATGAAGTGTGGTAAAAATAGTT
TCAATATGCCGTATTCACGTTTCAAATGTCTATGTGCAAATGTAAAATCA
GGATCAACATATCGGATGAGAGCAGACAGAGACATTGGTAAATGGTCGGC
TGATTGTCATGCTTACCCAGAAAAAGTTCGACATTTAAAGACACAACCAG
TATCAAGAAACTCATTCAATCTTACATGGAAATCACCAAATGATGCAGGG
ACTTTGAAGCCTTTGACCTATATAATCGAATGTGTTGATTCTAAGGATTG
CCAATCGTTCCCAGAAAAACACGGACGAAGAGAAATCCAACGTACTCAAA
ATGAATTCATCATTTTGGCAAATTTAACATCAGTGAGCATTCGAGTGTGC
AGTCATAATGTTGTCAGCCTCAGTAATTTGGGATCAGAAATTGGAGGGAC
ACCTTATTGCAGCGATTCTATATATATTGCATCTAAAGATCAATGTAAAC
CACCCAAGGTGACAATTTCCAAATTTAACTACACAAATGGGAGGCTTCAA
CTTTCAtggaataaaattgaaaatgaacttTGCAGATTTGTGTACTATTT
GGAGATCAAAAATCAATCGAATACTATACAAAGAGGACCGATGAAGAGAA
CAGCATTCACTATTGAAGACCTTGTTGAACCTACAATGGTACAGATATGG
GCAGAATATCATTTGCCTTATGGCAATGTTGCAAAGgggtcaaaaaataa
aatacctcTTTCGTCATCTCATCAAGCTCCGAGCTCTAAAGGTGACAGAT
TATGGCTTGACCTGGTTGTCAGTGGTTGCGTCATCTTCCTTATCGCGTTA
GTGGTGATATTCGTACGATACTGGAAGAAACGAAATACTGGAAAAAAGTT
ACTTCAATGGAAAGTTTTTGGGAACATTGATAAAAGGATTGAAAAATGTA
TAAGGATGGACAATACAAACCAAGGAGAGCCGACCCATGcatgaatttca
aaattgtcaTGGAATTCGaaagtcaaaaatttcaatATATGAATATTTGT
TGACATTTGATCTTCATCTATCGTCTTGGTACATAGTTTGTAGATAGTAG
AAAGAAGTTGTTGCGATGTATAGATTTGTTTGAACATTGCATCATTTTGC
AACTCCA
Run BLAST on NCBI

protein sequence of TCONS_00000086-protein

>TCONS_00000086-protein ID=TCONS_00000086-protein|Name=TCONS_00000086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=547bp
KTHEVPKNFHFVEFRSPNGINIKPAQRIIMETNLTVDGSSSSIYNALPIF
RLGLSFTAETILTPYKDKEIRFSDGNYRINKRMMTFPVHKNPRIPTEYMG
TAYFVIWFGLGPLVARYPNATNVTLSAFKISYLECPPQTHNLVKYKSSIP
APANKGRFNYQYGVCVRNAVPLDPHMSFLRTCDYEGKSRVNVRCVCKRGF
WFDRTNQQCKLCGEGFYKSKKGNTQCMKCGKNSFNMPYSRFKCLCANVKS
GSTYRMRADRDIGKWSADCHAYPEKVRHLKTQPVSRNSFNLTWKSPNDAG
TLKPLTYIIECVDSKDCQSFPEKHGRREIQRTQNEFIILANLTSVSIRVC
SHNVVSLSNLGSEIGGTPYCSDSIYIASKDQCKPPKVTISKFNYTNGRLQ
LSWNKIENELCRFVYYLEIKNQSNTIQRGPMKRTAFTIEDLVEPTMVQIW
AEYHLPYGNVAKGSKNKIPLSSSHQAPSSKGDRLWLDLVVSGCVIFLIAL
VVIFVRYWKKRNTGKKLLQWKVFGNIDKRIEKCIRMDNTNQGEPTHA
Run BLAST on NCBI

transcript from alignment at sc0000001:1781260..1795115+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000086 ID=TCONS_00000086|Name=TCONS_00000086|organism=Clytia hemisphaerica|type=transcript|length=13856bp|location=Sequence derived from alignment at sc0000001:1781260..1795115+ (Clytia hemisphaerica)
AAAACACACGAGGTTCCAAAAAACTTCCATTTTGTAGAGTTTAGATCACC
TAACGGCATCAATATTAAACCAGCTCAGAGAATTATTATGGAGGTAAGTT
GAAGTGGCCGCTCAAGAAGAAAAAAGTGTTAAGATTCTCTTAAAATATCC
TTGTATTTTCAcatgtttttaatttatttcacctTGTAAGAGCAAACTAA
AACCCCTTAAGCAAATATTTTGCACCAGTGAATTTTTATTTCCTCACCTT
TAGATTTTAAAATCTCCTGTGGGACAGAGAGAAAAAGACTTCGCAATAAT
TTCAGcagttttatttgattttcagaccaaTTTAACAGTTGATGGTTCAT
CCTCATCGATATACAACGCGCTCCCTATATTCAGGCTTGGATTAAGTTTC
ACTGCAGAGACCATCCTTACACCATACAAAGATAAAGAAATTCGGTTTTC
GGATGGAAATTATAgaataaacaaaagaatgatGACATTCCCAGTCCACA
AAAATCCAAGAATTCCAACGGAATATATGGGAACTGCATATTTCGGTgag
aaacaaattttttgaaattgtttgaaCAAAACTAAAATAATAAAGTGGAT
ACGGTACCCGTCATCCGCAAACGCCTGTTAAGGGCACTGAACATATAGTT
TGATTCGCtaacctctatagatatatctcctataagaaacttttttcgat
AGAGGATGAgcgatgagcagaagcctactgAACATAGTCAAAAGGTCGGT
TATGGGATTTAAAGATAAAACTTTTGAGTTCctttacacttttaacaaaa
aactgtcgaggatttttcatatgcgagttacgagttacaagttacaagtt
acgagttacgagttgcatttagaaccacgaATTGCGAGTTACTTTTNAGT
TACAAGTTacaagttacgagttacgagttgcatttagaaccacgagttgc
gagttactttttacgagttacaagttgcattttaacaaaataaaatcgcg
agttgcgagttacgagttgcattttaacacacaagattcgcgagttgcaa
attaaaagtgcgagttgaaaattgaaGGTACGAGTTGcatattaaaagtg
cgagttgcatattaaaagtgcgagttgcatattaaaagtgcgagttgcaa
attaaaagttcgagttgcaaattaaaatcaagTCTGAGACTGTTATCTTA
AATAATAACAGTAAAAAAAAAGCTTAACCCAAAGCCATGCATGGAAAACG
GAAAACTCAGCCAAACTGTTTACGTTTTGTGACTAAAGTTGTGAAACCAC
TCAAATCACACATTTTTTCGCTCATTTTTGTATAAACACAAAACAAAGGA
TTACAtaactttaagttttgaaaggaAATGCGCGTGTTTCTTCCTCGAGA
AACATCTTTAATGTTGCTTTTAATAACGTGGACGTTACCTGTCATTTTca
agacaaagtgacactttttgacaaaattattgaCAGGCTACTTAAGTGTG
ATACCTGCAagctttattacaccaaatattttaattgtacagaatgagat
gcctttgatatactgtaaatagataaatattgtcAAGAGGCAAACTTTGG
GAagggcagttttagagatagaggcccggaaaacccgagttacaaaaacc
cgagttacaaaaacccgagttacgacgaatgtgacgtcacccccacttgt
taatttttaagaatgttttcagctgtcaaagggaagtccccttattttgc
tctaaattcCTAAATAGTTCAGCCtatatttactttatttttgggttttc
aaaagtacAATTTAGGTACAATTTAAGtacaattaggtcccccccccccg
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNcacccccccccccgtttatttggaacctggGAG
TAACAGAAAATCTATAACATGCCATACTTTTGTTTGTTACATCAGTCAAA
TGTTGACGTACGTAAAACGTTCaagcgaaaataaaaattgcatttGTTTC
TTTGGCTTAGGCTCTATTAAGCAGCTTGAAATgttgaaacaataaattta
aaCTACTAAACGGTTAtagggcccccccccccagtggacccaaatttcac
gcattcacgcaaaaatgtttcgcaattcacgcattcacgcaagtttttct
cgaaattcacgcaaacccaactttttgggaaatcgggaaaattttcggaa
aaaatcggggaaaatgtcaaaagaggtcttgcacatttcactaagttacg
taatttacttaatttccgccattatggagtaaaacgttcgatttgcataa
aaaagtatgacaaggctgtactcgagatattattcgaccggatctggtca
tgcacttgagaaagacttaactcagtagtgattttttcctgtagacctga
ctataaaacaccgtgtttggtagcgtcataagaagcccccCAAATAGAAA
GTGTTACGTAATTGttcaactttaatcacatgccatcacgcaaaatattt
gattcttctaacttgtcacggtcgtttggaaaaggtgaagcttctgAAGT
TAACGTATCACGATAGTAAGTGAAAggatatgcgccgcaggcgaattttt
gtacaaaaaatagcttaaacattatcaaaaataggtcaaacaaactcgag
tatgacaccatgatgcttagctcaggggtaaggaggcgcaaccgtggttt
acgcagagaggaaatttttgcatttctgtcactcgcgtttggctaaaaat
gctctctttaacaccattgaaaaagaatgtaggctaaattcgttagaggc
aaggtacgatcgcgtgatagcttgtaaaatgagttaaaagaatgaacatt
tgttgcgagcgaaacgatcaaaaaaaatcaaaaagaaagattttaatcAA
GCCTCGCGAATTAATTTCCTaacgtggaggggccgaaaacatagtgacta
aggaggcgcaaccatgttttgcgccgacaggagaaaatttctattttaac
cctctgatgtgcttaaatacggctccatttcagactaattttgccaagaa
atcaggttatcgaaagtctaTATCATGGGTAaaagtttctttgaaataag
tttctttttatttgcaaaaacgtggtgaagtcatggccgcctcctTCCCC
CAGTGACTCTGGCCCTGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNttaaacaaacactttcaagggggcaaatt
agagttatttaagattcgagggccaatacatgtttggcccgagcgaaaaa
atctggaaatttaaggtgtcttgattgctagaaagcgcatctaaatcatg
aatcgttttacaaaatagagaatttgaaagttgcaGGTTTTTTTGTAcac
cttcacctggcatcccttgaatttgaaataggtgcgcaccttggggtttt
ctacaaactgtgaaaaggaaaaattcacgcgttcacgcaaaaaacagggc
agattcacgcattcacgcaatagaaacATGAATTTTcacattcacgcaag
ttttttcaattcacgcattcacgcaattttttttcgattttcacgaattc
acgcaaccaaaaaagcccattcacgcattcacgcaaaccgctggggggcc
ccaTTATACAACGAATTCACGTTGACATGCACACTTTAAAAATTGCCCAc
tgataaaagtaaaaatatagtTATATAGTTATATAgtttaaaggcttggg
gacacaagaagtttttttcgtgttggtgcaatgcaacatgcttgatccca
ccaacctgaaaaactttctcgtgtctccactcCATTCTTCCatttgaatc
aattttgctctATTGTGCCAGGAACataatcagcgtgtcttttagGTATT
TCCCTCACATTTTGTCTCATGAAACGAAACaaaaaccatgggacacgcaa
tttttttcttgtgttggtggaatcgagcatgttgcattgcaccaacgcga
aaacaacttctcgtgtccccaaatGAGCCTTTAACGTGTAACAATCTCTT
TTTATCCAAAAATTGTATAAATAGTTTGGGTTTATACAtagttttatcaa
aagttacgtAAATCCTGTTAGCTTTAACCTGATAGCAGCTGTTGATAACT
TTCTTatgcgcacggtaaacctctgaaggtgcttgaaaattatacatctg
aggaaaatagtcctcccgcggaaaattctacaacaagaatcttgttgtgc
gccggaaattTTAataactgatacggcgccctattcataaacacaatcac
gcattTTTTTGTAATTCCTAGTCCTTTTAAGATGAACGCGGACCttatac
cgtgaaaagcacagctcaaaatcatatatttacgctgtgccgacgaatcg
agattctattcatcgcgcaatcagcgaagacaaaagtaaccatgacgNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNatccaagatcttggatgagcgtc
aaagtcgatatttttattcccgtcgttgaaaacacaacttacaaaaagtc
atcaatgctttgtaaaaatagtcagtgatagagaatcgtaacataaagtc
tgtctattatttcgattcaattaaagtgacatttccataattaaaagttt
agtaattactttTATACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
tttctacagtgattagattgacacatgcgcgataaaatttctattatttg
tcttcagaggttactattttctttgaaaacttaacctctgatactcaggg
tacggaccttacgatttcgagatagcatattcgtcagattgttggTTTTC
ACACATCcatttagagcttcagcgtggtgtgcagaaaacattcacaatct
gatctcaagTTCGTTAGCTTAAGCAGTCAGTGGGGTAGCCCGGTATCCCG
GTATTTAGTTTGTCTTGTCTTCTTCTTATCCCTAGAGAATTAATGAATAT
CTCGGAAAtccctttttttggaaattttctgttttataCCACAAATAGCT
ATTAAGCGCTCCGCGTAGGTTAAacaaacgtgtacattagtaaaacaACA
TATGAGAGCAGTATCCTTATAAATACACGGTTAAATGTTCTTGtcatatt
aattaaaatggaaatctgtacggatgtcactctaagtagacgctagacga
tgctatcgtccgtataatatattattatgatataacatagtttgtatatt
ataaaacgtaatatgttgcgcggcggatagagtctgtagTCAATAGCTAC
ACCCGAAAAAAATCCCGTCTTCATGggtgttcctcttagatgaaactcgt
cttaaactatagcatagtctaagtAGACGCCAAAACAAAATGGGCTTTAC
TTTTGAAACTataactgtaaatcactcccttgacacatttgttagcattt
gatgACTGAATTTTGTCTCATATCAGATGAGAAgatcttaacatgttctt
tatTTCCTTATTTTCTGAGTATTTTCGTCGATTTCTTTAAGAAATCGGTT
CTTTAAGAGtccaaaagccttaaaatgtttttagctTGTTCATGGCATCG
AATTCTTATATAGcttattcttatataaaaaacgtgtattttttacaGTC
ATCTGGTTTGGTTTGGGACCACTAGTGGCAAGATATCCAAATGCAACAAA
TGTCACGTTATCAGCATTCAAGATCAGTTACTTGGAGTGTCCGCCACAAA
CACATAACTTGGTAAAGTATAAATCAAGTATTCCAGCCCCGGCAAACAAA
GGACGGTTTAATTACCAATATGGTGTTTGTGTACGAAATGCAGTACCGTT
GGATCCGCATATGTCCTTCTTGAGAACCTGTGATTATGAAGGGAAATCTC
GTGTTAATGTTAGATGCGTTTGCAAAAGAGGCTTCTGGTTTGACAGAACA
AATCAGCAATGTAAATGTGAGTTTTATTTCCTAAAACAATACAACTTCGA
GGACAGTAAACAAAGTTTGAAGTATTCAAAACAACCCTGTATCAAATACC
CGGTGGAGCCCCTGTCTCAcggaaaatttagccaaaaatTCGTCCCCGTT
GGAAAAAATACccgaaaatttcaatttcactaGGAAATAGCCATTTCTCT
TTACCCCCATTGGTAATTGAATGGTAAAGTTTCATTCCAAAACaattctt
attatttttttttttttttttttttctgtggattaaaaagagaaaaacaa
agggttagaaaatagtaaaagaaaaaaactagtTGATATAAGCAGTAGCT
TCAGTGATAATAATATCCTCCAAGTTTTCAGTTTTCTGCTTTTTGAGCAC
ACGAGACCCACGTAAACATAAGACTGTGGATCTAATCAGAGCAAAAGCAA
GTTTTGTTCTTAACCAGTTTAAGGTCGGATTAAACAGTTCATCCCTCTTG
TCGGAAATCAGGATAGCTAaagatttgatgaaatttgaagCTTCTCTAGC
GGTTCCCCCGTTGGTTGTGAAAATTAGGGGTGTGAAGGATCCTTGTTCCA
CGTTTATGATTCGATGGTTATAGTGGGTTTCCTTCTCCCTTTCATTTGCT
TCGAAAGCGCTTTTGAGGCTCTTCCTAGAGTACCGTTGAGTGTAGGCATT
GAATACCCTGACATCAAAAAATGCTCTCTGGCCTCTAATCCAGAACCCCA
TAGCGCTTCAGCTCTTGCTCCGGGTTCGGTGATTGTTCCGGTTGGCAGGT
CCTCCCCTGTAAGTGGCTCGAGTTGTGGTTCTATTGTGACGTCTTTCTTG
ACATCACTGATCAGCTTAGCGATAGTGTCCCTGAGTTCGTTATGCCTCTG
GTAGACAAAACCCCCTTTGGCACAGGATAAGACATGCTCGACAGTGTAAA
CTTTACCACATGCACAGTGAGTAGGTAAGTGTTTCAATTGCCATCTGTAA
CGTACTATAATTGCGTCAAAAAACTCTCTCTTCGATAATACAAAGTTCTC
GTTTTTCAGGGGTAATGCTGTCAGCCAGTTTGACGCTCCTTGGGCTTGGG
CTAGATCGTTTGCTCTAAGCTCGTCCTGGTTCATCTGGGATCTGATGTCC
TGTAGCAGTGTTTTCtgtctttcttctttctcaCGTGTTACTTTGTATTT
GGTGGTTGCGTTTAGTGGGTTGCAGTTGAGCTCCTTTAGTTGGTTGACTA
TGTCAGTTTTGAGCTGGTGGCTGACTCTTCTTGAGATGCTATGCTCGATA
TCGGAGATCTCAGATAGGATGGGTATACCCAAACCCCCCCAACTTCACCG
GTAGACTGAGGAGCTTCCTTTCCATCTGGTTGCAGTGATATCCCTCTGTC
AAAGCTGGTATAAGATGCTGGTCTATTGCGTCGTCTAGGGGCTTCAGTAG
ATCGGAGATGTCATCCAAGACTCGAATATGAATTTGTGAATGAACCCACC
TTCAAAAGCACTGTATGCACACTGAGGCTGTGCCTTGGCAATATCTGATA
GGTAAATAATCTCCTTGACCCAATCTGATACTTTAAACTTAAGGTAATCA
GATTTGAAATGTTCAGTTCCAATGGTGCCGACCATTTGTTGTTATATTGA
TGTTGGTTCCCTCAAAAAGTTCTAATGATTCAAGGTACTTGTTTTCTTTT
ACAATCAGCCAAGATTTGCTAGCCTTAGGGTGATAACCAAGGTAGGGTCT
GAGTCTGTTTATTTCTGACCACCATTTCAAGAGGTTAGCAAGCTTACCAC
CACCAGCAAGATCATCTGCAAATGCAGCTTCTTTGACGTTCCTCGATAGC
GGGTCCTCTGTCAATAAATCTAGCAAAGGTACCAACCCTAGGGCATATGC
AGGCATAGCCATTGGATCGCCTTGGGTGGTTCCTTCACTTGATGACAGTT
CGGAGCCTCCAGTGACAAAGAGTCTAGAATTTTTACTGTAACAGTTTAGT
ATATATGTTGAGATTGCTGAGCAGAGAAATTTAATGTTGTGCAGAAAAGC
ATCTCGTTTCAAGGTGTTAAAAGCGTTAGAGGCGTCTACAAGAAGGATGG
CGTCGTTATCTTCTTCACTAAAAATTTCATTCATAGCATGTACAGCAGCT
TCACTACCTGCCTGTTGGCCGGCACACACTTTCAGTGAGCCTGCTGCTTT
CATAATATCCCCTTTAATGGTagatatcaaaacttttccaaaaatacGCC
TGATCACCTCTCCAATTCCGATTGGGTGAACCCCTGGATTTTTGTCAAGG
GGAATCAGTCGACAAGCTAGAAAAGCTTCAATGTTTCTTTGGTCTTTTGC
TGGGTCCAGTTTGTGCGACAAAGAATTTTAAGCATGTTTGCCAGAGAAGT
TCTGAGGTCAGATCCAACGTTGCCATAATTCCTGGAGGCCAAGATCCATC
TCCAACCGTCTGCGTCAAGAGCGGAAGGTCCAGCAGATCCTAAAACAAAT
CTTATTGGCGTTTCTGAGCTGGAACAGCGATAGATTTTCTATATTCATTG
AAACTTCCACAGTCACTTTCATCCCCAGTAAGAGAAATAGTTCCACCAGG
GCACTAAGACAAGGGTCGTTTAAATTTCTACCACATTTTCTTCACATacg
taatttaaaaaaaaaaaatccaaaaattcttgaaaaactatTTCATTCGA
TTAGGATTTGAATCCTTTATTTGGCTACTTGGTCTAAATTATATTCAAAA
TCGTCTGTTTACGATATGCCCCATTGCAATCTTCCACGAACCCAACAAct
aattggttgaaagtgacgtattgattgattttacgtcgcttaaacaatag
aaaaaatgacgtattgggtggaacaaaaacagaaattgTATAATTTCGTg
cagtcattgcagtggtgcatatcatgaataggagTAAAATAGTTTGTCGT
CCAAATTTGGAGGTAAAATTTGCAATCAAGCACAAAACTTGGTTTATACT
GTATATATGATTGCTAAGATGATGTTATTCCATTCTTCTTGTTCAATTGG
TTCTTCCTTTCTTTGATTACCTTCTGTGGGAATATATCTTTATCTACCCC
TGGTGGGAATTCTAATTAAGATCCTCTAAGATCTTAAAGTTTCTTTTAAG
ATCTTATCAAAAGCAAAGGTCCTTTCTATTCATGGTTAATTTTCTGGTGT
CGTTCACTCTAGTGTGCGGAGAAGGTTTCTACAAATCCAAAAAAGGCAAC
ACCCAATGCATGAAGTGTGGTAAAAATAGTTTCAATATGCCGTATTCACG
TTTCAAATGTCTATGTGCAAATGTAAAATCAGGATCAACATATCGGATGA
GAGCAGACAGAGACATTGGTAAATGGTCGGCTGATTGTCATGGTAAATTG
ATATCTAACaactccttctcacagacccactggtcCGCTGGTCACCCCTT
CCAAAGATTTGGCCAAAAAATATCATCCCTCGTGGAAAACTATCCtgcaa
tttttgtccccactgaaaataatcaaataagccaATTTCCACTAAAAAGA
ATTATGCTAGTTTTCCTatcctcactgaattttctgacttgaataCAAAA
GAATTCAAATCTCCGGCCATGAAAAATACGggaatatcaatctccatcga
gttttagtccgtgATTTTTACTCCCagtggctgaaaaaatcctaccggtt
CTTTGAAGAGGGCCTGTTATCTATAATAATCCTTCTTTTCAAAGGTcgtt
tcaatttgaaaaaaaacttgggAATCCTCCATTTATTccaatttgaaagt
ttttttcaaataccTTCTCTTTTTATTCTAGGTATCTTAGAATATAGCTG
TATTATAGCTCAGATCTCTTATATTCATCGTGCacgtttttaataagaac
cTCCAATTTCTGAAGTCTATCCggatatgttcttaactttaaaGTCTAAA
ACCGTGTTCTCACGTGGCggttccgcaaattttttttccgtacgCAGCCC
AAGCCCTGATTTAGCGGCCCAAGACCTGAATTACTGGCCCAAGACCTGgg
aaactttgcaatttttgagaTTTGCTTTTTTGCCGTGATTTTAGAATTTA
TAGTGGCTCCAGACCTGAATTATTGGCctaaaaagttctaaaaaactATT
AGAGCACATTCATTAGAAGATCATCAAATTGAAGTACTTTTCCATGGGAA
TATAACGGTTCGCTTatcttctttttccaaaaaaagcaaGTCTCAAAAGT
TGCAAAGTTTCCCAGGTCTTGGGCCGCTAAATCAGGGCTTGGGCCGctta
cggaaaaaaaaatttgcggcggttccgtttcgctccgaaacggaatgaag
ccattctattggttagaagtgacctAAAACTTGAATGTagccaatagaat
ggcttcattttgtttcggagcgaaacggaactgtgacgtgtgaacatggt
ctaaaaagATTTCGAGACTGTTTATTCTCTTACAGCTTACCCAGAAAAAG
TTCGACATTTAAAGACACAACCAGTATCAAGAAACTCATTCAATCTTACA
TGGAAATCACCAAATGATGCAGGGACTTTGAAGCCTTTGACCTATATAAT
CGAATGTGTTGATTCTAAGGATTGCCAATCGTTCCCAGAAAAACACGGAG
TGAGTTATAATTTTTATTGATCGATTTAATGCTTAAAGAATTTGCTTGAT
ATTATCAACAACAAGTATTATTATTCCACTTTTGAAGAAACTCGCTCCCA
GGTCCCTTAGTTTGCTTTTCTACGATTTTGAGAGCTCACAAAAGCATTGT
ATCAAATCCCCTTAGGAGGCCGCCCAGGTGTaagtctgatcacgatatca
cgtaATTTTTTGACTtcgatcacgatatcacgcaaattcagaaaaaaatt
tggataatcacgcattcctttgaaaaagtccaaaccacgcatcacggctc
aaaaatctttcaaattacgATCACGTTTTTACCCGAGGCTCTGACCACGC
AAtcacaatcaaaatttccaaatcacgtaatcacacTAGAAAATACTCct
tatcacgccatcacgaaaaccgcttagGGGGTCTCCTTTAGTAAAACCAA
AAAGTAGTGCGATTCGTTCTAGGTACATATCacttttacattttcaaaac
CAAGAAGAAGCCCCTAACTCATAGTTTCTGTAACTTcttcagtttttatt
tttttacaatttcagCGAAGAGAAATCCAACGTACTCAAAATGAATTCAT
CATTTTGGCAAATTTAACATCAGTGAGCATTCGAGTGTGCAGTCATAATG
TTGTCAGCCTCAGTAATTTGGGATCAGAAATTGGAGGGACACCTTATTGC
AGCGATTCTATATATATTGCATCTAAAGATCAATGTAAGCTTTAATTTTT
TACTCAGACATAAATCGAGTAAGGGCGAATAATATTAACTTTCATTGCAA
AACTTTTAAGGGTTTAAGGTCTTGTTTTAATCATTTTGGATGGACACTTT
AATTTTTATTAGCCTCCCgccaattcttttaaaaaacgcTAAAAACTTTT
CCTATTGATCAAGGCAAATTTAAAACCTTGAATTTTGATTGTGTGTATCC
TAAAATGGGTTTCAGATTTAACATTGTTGAAAGGTATATGGTATCAGAAC
AGGAACATTTTTGCCGAACTCGAAGTAGTTTTGAGCTATTGCATATTCAA
GGGGCGCCGGTTAATTTAGGATGCAAATGTATATTTGGACCTCAATGGCG
TCGgtaataaaacttaaaaaacctttttttagatGTTTTTAATCGGTTAT
TGAAAATAACTTTTAGGTAAACCACCCAAGGTGACAATTTCCAAATTTAA
CTACACAAATGGGAGGCTTCAACTTTCAtggaataaaattgaaaatgaac
ttTGCAGATTTGTGTACTATTTGGAGATCAAAAATCAATCGAATACTATA
CAAAGAGGACCGATGAAGAGAACAGCATTCACTATTGAAGACCTTGTTGA
ACCTACAATGGTACAGATATGGGCAGAATATCATTTGCCTTATGGCAATG
TTGCAAAGgggtcaaaaaataaaatacctcTTTCGTCATCTCATCAAGCT
CCGAGCTCTAAAGGTAAAATGACaggattttttttatatatagaaaacta
taaagaaatccttgtgttaaaaaattacacgttaatttttaagaacattc
aaaatgttTGAAGCCTTNgttaaaaaattacaagttaatttttaagaaca
ttgttgAAACAAATGTTTGAAGCCTTTAGATGTACTTAACGTTTTGGGTT
TCAGgccaaaaaaatgttcttaacatgtttttattttgtccattttttga
ctatttttgttcatttttcctaagaaattgggtgttttcgagtccccaaa
gccttaaagtgttcattaacttgttcttaatattttgaccatcgaagcct
tatgttcttgtatagtttgttcttataaaaacgtgtaggaAGGCTAGCAA
CACTTAACGTAAAACATCATGTTTtgacttttatcaaaaaaatcttaATA
TAATCTTTAAAACGGCTAAAAGCCTTGTCATTACCAAGCTTTCCCCTGGT
TTGGATTTGTTATCAAAAACATACATAAACTTTTGACTATCATTGCTCTC
AAAGTTATCATGAACCTAGaatagagtctacttctgactgaactagTGGC
ATgtatttgctaccacctcaaaCAAAGCCAAAAATACTGAGTCGACCAAA
TTTATCACCGCCACATCCAATCCATCCATCAAAAAGCAATAAGTGACCCC
GGGGTGACCCCGGGCTACCATGAACCTCAAAAAGGcttgattttcttttc
tgaaCAACTGAACGACTTCTTTACTTTAATAAACATTTAGGTGACAGATT
ATGGCTTGACCTGGTTGTCAGTGGTTGCGTCATCTTCCTTATCGCGTTAG
TGGTGATATTCGTACGATACTGGAAGAAACGAAATACTGGAAAAAAGTTA
CTTCAATGGAAAGTTTTTGGGAACATTGATAAAAGGATTGAAAAATGTAT
AAGGATGGACAATACAAACCAAGGAGAGCCGACCCATGcatgaatttcaa
aattgtcaTGGAATTCGaaagtcaaaaatttcaatATATGAATATTTGTT
GACATTTGATCTTCATCTATCGTCTTGGTACATAGTTTGTAGATAGTAGA
AAGAAGTTGTTGCGATGTATAGATTTGTTTGAACATTGCATCATTTTGCA
ACTCCA

Coding sequence (CDS) from alignment at sc0000001:1781260..1795115+

>TCONS_00000086 ID=TCONS_00000086|Name=TCONS_00000086|organism=Clytia hemisphaerica|type=CDS|length=1644bp|location=Sequence derived from alignment at sc0000001:1781260..1795115+ (Clytia hemisphaerica)
AAAACACACGAGGTTCCAAAAAACTTCCATTTTGTAGAGTTTAGATCACC
TAACGGCATCAATATTAAACCAGCTCAGAGAATTATTATGGAGaccaaTT
TAACAGTTGATGGTTCATCCTCATCGATATACAACGCGCTCCCTATATTC
AGGCTTGGATTAAGTTTCACTGCAGAGACCATCCTTACACCATACAAAGA
TAAAGAAATTCGGTTTTCGGATGGAAATTATAgaataaacaaaagaatga
tGACATTCCCAGTCCACAAAAATCCAAGAATTCCAACGGAATATATGGGA
ACTGCATATTTCGTCATCTGGTTTGGTTTGGGACCACTAGTGGCAAGATA
TCCAAATGCAACAAATGTCACGTTATCAGCATTCAAGATCAGTTACTTGG
AGTGTCCGCCACAAACACATAACTTGGTAAAGTATAAATCAAGTATTCCA
GCCCCGGCAAACAAAGGACGGTTTAATTACCAATATGGTGTTTGTGTACG
AAATGCAGTACCGTTGGATCCGCATATGTCCTTCTTGAGAACCTGTGATT
ATGAAGGGAAATCTCGTGTTAATGTTAGATGCGTTTGCAAAAGAGGCTTC
TGGTTTGACAGAACAAATCAGCAATGTAAATTGTGCGGAGAAGGTTTCTA
CAAATCCAAAAAAGGCAACACCCAATGCATGAAGTGTGGTAAAAATAGTT
TCAATATGCCGTATTCACGTTTCAAATGTCTATGTGCAAATGTAAAATCA
GGATCAACATATCGGATGAGAGCAGACAGAGACATTGGTAAATGGTCGGC
TGATTGTCATGCTTACCCAGAAAAAGTTCGACATTTAAAGACACAACCAG
TATCAAGAAACTCATTCAATCTTACATGGAAATCACCAAATGATGCAGGG
ACTTTGAAGCCTTTGACCTATATAATCGAATGTGTTGATTCTAAGGATTG
CCAATCGTTCCCAGAAAAACACGGACGAAGAGAAATCCAACGTACTCAAA
ATGAATTCATCATTTTGGCAAATTTAACATCAGTGAGCATTCGAGTGTGC
AGTCATAATGTTGTCAGCCTCAGTAATTTGGGATCAGAAATTGGAGGGAC
ACCTTATTGCAGCGATTCTATATATATTGCATCTAAAGATCAATGTAAAC
CACCCAAGGTGACAATTTCCAAATTTAACTACACAAATGGGAGGCTTCAA
CTTTCAtggaataaaattgaaaatgaacttTGCAGATTTGTGTACTATTT
GGAGATCAAAAATCAATCGAATACTATACAAAGAGGACCGATGAAGAGAA
CAGCATTCACTATTGAAGACCTTGTTGAACCTACAATGGTACAGATATGG
GCAGAATATCATTTGCCTTATGGCAATGTTGCAAAGgggtcaaaaaataa
aatacctcTTTCGTCATCTCATCAAGCTCCGAGCTCTAAAGGTGACAGAT
TATGGCTTGACCTGGTTGTCAGTGGTTGCGTCATCTTCCTTATCGCGTTA
GTGGTGATATTCGTACGATACTGGAAGAAACGAAATACTGGAAAAAAGTT
ACTTCAATGGAAAGTTTTTGGGAACATTGATAAAAGGATTGAAAAATGTA
TAAGGATGGACAATACAAACCAAGGAGAGCCGACCCATGcatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000043XLOC_000043Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000086-exon-sc0000001-1491911889:1781260..1781352TCONS_00000086-exon-sc0000001-1491911889:1781260..1781352Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1510915933:1781260..1781352TCONS_00000086-exon-sc0000001-1510915933:1781260..1781352Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1575043694:1781260..1781352TCONS_00000086-exon-sc0000001-1575043694:1781260..1781352Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1491911889:1781585..1781804TCONS_00000086-exon-sc0000001-1491911889:1781585..1781804Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1510915933:1781585..1781804TCONS_00000086-exon-sc0000001-1510915933:1781585..1781804Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1575043694:1781585..1781804TCONS_00000086-exon-sc0000001-1575043694:1781585..1781804Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1491911889:1787558..1787875TCONS_00000086-exon-sc0000001-1491911889:1787558..1787875Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1510915933:1787558..1787875TCONS_00000086-exon-sc0000001-1510915933:1787558..1787875Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1575043694:1787558..1787875TCONS_00000086-exon-sc0000001-1575043694:1787558..1787875Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1491911889:1791072..1791251TCONS_00000086-exon-sc0000001-1491911889:1791072..1791251Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1510915933:1791072..1791251TCONS_00000086-exon-sc0000001-1510915933:1791072..1791251Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1575043694:1791072..1791251TCONS_00000086-exon-sc0000001-1575043694:1791072..1791251Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1491911889:1792345..1792508TCONS_00000086-exon-sc0000001-1491911889:1792345..1792508Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1510915933:1792345..1792508TCONS_00000086-exon-sc0000001-1510915933:1792345..1792508Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1575043694:1792345..1792508TCONS_00000086-exon-sc0000001-1575043694:1792345..1792508Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1491911889:1793075..1793243TCONS_00000086-exon-sc0000001-1491911889:1793075..1793243Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1510915933:1793075..1793243TCONS_00000086-exon-sc0000001-1510915933:1793075..1793243Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1575043694:1793075..1793243TCONS_00000086-exon-sc0000001-1575043694:1793075..1793243Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1491911889:1793676..1793972TCONS_00000086-exon-sc0000001-1491911889:1793676..1793972Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1510915933:1793676..1793972TCONS_00000086-exon-sc0000001-1510915933:1793676..1793972Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1575043694:1793676..1793972TCONS_00000086-exon-sc0000001-1575043694:1793676..1793972Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1491911889:1794750..1795115TCONS_00000086-exon-sc0000001-1491911889:1794750..1795115Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1510915933:1794750..1795115TCONS_00000086-exon-sc0000001-1510915933:1794750..1795115Clytia hemisphaericaexon
TCONS_00000086-exon-sc0000001-1575043694:1794750..1795115TCONS_00000086-exon-sc0000001-1575043694:1794750..1795115Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000086-proteinTCONS_00000086-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1781260..1795115 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.510875	0.402759	0.363318	0.630936	1.40616	1.16825	0.277485	0.250985	0.141545	0.293829	0.112465	0.248448	5.51967	3.86382	0.34038	0.543756	0.261609	0.307487	4.72861	13.0604	0.042931	0	0.229101	0.683734	0.0715098	0	0.140851	0.227423	0.0492835	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011641Tyr-kin_ephrin_A/B_rcpt-like
IPR013783Ig-like_fold
IPR003961FN3_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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