|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000099 ID=TCONS_00000099|Name=TCONS_00000099|organism=Clytia hemisphaerica|type=transcript|length=3677bpRun BLAST on NCBI protein sequence of TCONS_00000099-protein >TCONS_00000099-protein ID=TCONS_00000099-protein|Name=TCONS_00000099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=765bp MASQIKDLAMDEDIGPSVDSPLIEERIAARRLRITRRMEALKKDTLGEDVRun BLAST on NCBI transcript from alignment at sc0000001:1853832..1880636+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000099 ID=TCONS_00000099|Name=TCONS_00000099|organism=Clytia hemisphaerica|type=transcript|length=26805bp|location=Sequence derived from alignment at sc0000001:1853832..1880636+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:1853832..1880636+ >TCONS_00000099 ID=TCONS_00000099|Name=TCONS_00000099|organism=Clytia hemisphaerica|type=CDS|length=2298bp|location=Sequence derived from alignment at sc0000001:1853832..1880636+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00000099 vs. Swiss-Prot (Human)
Match: DRC1 (Dynein regulatory complex protein 1 OS=Homo sapiens GN=DRC1 PE=2 SV=2) HSP 1 Score: 486.108 bits (1250), Expect = 6.559e-155 Identity = 350/754 (46.42%), Postives = 481/754 (63.79%), Query Frame = 3
Query: 192 IGPSVDSPXXXXXXXXXXXXXXXXXXXXKKDTLGEDVTVKVSSEPTKELSKSRKQIEESFQQLAKLISDGTELVSNIEVACDSREATLRQEEDENVRQRTQKLQDEVKTAAIKFEQITKKWEGALKKDVPQQLKEMLESQRELCDEMIGEKDNLIDEXXXXXXXXXXXXXXXXRKQSEDADLMLERMEEQIKTLNRAHKKELDNVENAFYSERRDVLQSHKNKWTNQSEQRRQKEQEYLELRQKHVENYEEQLNTLRVQDAEEYNMVKIKLETDVQILEQNLQQMKATYQLNQEKLEYNFQVLKKRDEENTITKSQQKRKITRXXXXXXXXXXXXXXXXXXXXDENQAFSDDLKRMTEQYKELQKKFRHFQTTDNKKFVDIWKMNEEQTRELIEDLLSADRIIFEQQLGMTWRSPEINFLQKVGPINGSKKAISKTALDAATEILAYDESADSNSHGKMTAKTSTKEGSTKQEIEHSHEDLDAPLSTGAIKRMLELLCDESGFLVEAKLIKLLAPIEKDEQSLMKLDAIFNAIGIESERDIVSLGKYFYNRYLXXXXXXXXXXXXXXXXSLTNENAPITEGANQDQDQVDTPTNQKQEACDLTNQETASNESLESIPMVVRQE------LIHPNEVVKSLRKFIDDNREPFKDSRKSNTVRIGSSSGRDSSYDEQYWTQLASVIDLQRERLWDGMVSGFEKYSQILKERSTLIGETDSLRQQNSELRMLLHQYLSSKVNQELEIPPTRVLQVET 2435
+ PSV S +ERI ARRLRI R+EA +++ LGE + K SE + SKS KQ EES +LAKL+ GTELV+NI+VA D RE R EE+E RQR +KL++EVKT+ KF++IT KWE +K +PQ+L EML +Q+ C ++ +K+ LI ELQQ+LK KDDQYVKDL+KQS+D L+LERMEEQ+K + + ++EL N+E AF ER+++L S+K KW + KE EYL R K VE+YE+QLN R+ D EEYNM+KIKLE DVQILEQ LQQ KA YQLNQEKLEYN QVLKKRDEE+T+ KSQQKRKI RL D+LNNL+ K KQ +Q+++ENQ+ + D KR+ Q+KELQK RHF D++KF +IW MNEE+ ++LI DRII LG+ W +P+ FL VGP IS+ +AT+I+ +M ++ +E S+ DL +S KR+L LLCDESGFL+E+KL+ LL P+E++E L++LDAIF+A+GIESE D+ L +F +Y + S + + P ++ + + +T T + E + T E ESL +E +IHPN+V+K L F+ ++P +DSR V+ + RD+S D +YW L +VI ++ LWD + + EKY +L +R+ L+ E SL QQN+EL+ LL QYL+SK+N EL++PPT+VL+V T
Sbjct: 23 LAPSVHSDNSQERIQARRLRIAARLEARRREALGEYLDGKKESEEDQ--SKSYKQKEESRLKLAKLLLCGTELVTNIQVAIDIREIHRRVEEEEIKRQRIEKLENEVKTSQDKFDEITSKWEEGKQKRIPQELWEMLNTQQLHCAGLLEDKNKLISELQQELKTKDDQYVKDLKKQSDDICLLLERMEEQVKNVMKTFREELYNIEKAFEVERQELLASNKKKWEQALQAHNAKELEYLNNRMKKVEDYEKQLNRQRIWDCEEYNMIKIKLEQDVQILEQQLQQRKAIYQLNQEKLEYNLQVLKKRDEESTVIKSQQKRKINRLHDILNNLRSKYAKQIKQFQEENQSLTSDYKRLVMQFKELQKAMRHFALIDDEKFWEIWLMNEEEAKDLIARAFDVDRIIHTHHLGLPWAAPDFWFLNNVGP-------ISQQPQKSATQIVE-----------EMLMRSEEEEAEEAAAEPESYLDLPKQISEKTTKRILMLLCDESGFLIESKLLSLLLPLEQNECYLLRLDAIFSALGIESEDDLYKLVNFFL-KY------------RAHRLSSSLQIKPCSQASMEKASMEETSTRSELELAEQTEMEGEKEESLVEGEKEEEEETPPSPWVIHPNDVLKILEAFVMGLKKP-RDSRAPLRVQ---KNVRDNSKDSEYWQALTTVIPSSKQNLWDALYTALEKYHLVLTQRAKLLLENSSLEQQNTELQALLQQYLNSKINSELQVPPTQVLRVPT 739 The following BLAST results are available for this feature:
BLAST of TCONS_00000099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.