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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000215 ID=TCONS_00000215|Name=TCONS_00000215|organism=Clytia hemisphaerica|type=transcript|length=3605bpRun BLAST on NCBI protein sequence of TCONS_00000215-protein >TCONS_00000215-protein ID=TCONS_00000215-protein|Name=TCONS_00000215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=950bp MVCYRKFIKYLYPKPRRKTMVVLSLIAIVFIFFSVQRTTHRKHIKNTLWVRun BLAST on NCBI transcript from alignment at sc0000001:1532018..1558131- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000215 ID=TCONS_00000215|Name=TCONS_00000215|organism=Clytia hemisphaerica|type=transcript|length=26114bp|location=Sequence derived from alignment at sc0000001:1532018..1558131- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:1532018..1558131- >TCONS_00000215 ID=TCONS_00000215|Name=TCONS_00000215|organism=Clytia hemisphaerica|type=CDS|length=2853bp|location=Sequence derived from alignment at sc0000001:1532018..1558131- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000215 vs. Swiss-Prot (Human)
Match: NDST4 (Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 OS=Homo sapiens GN=NDST4 PE=2 SV=1) HSP 1 Score: 627.476 bits (1617), Expect = 0.000e+0 Identity = 347/834 (41.61%), Postives = 503/834 (60.31%), Query Frame = 1
Query: 625 SVLVFTGSETSNTKDQLKALFRSMKIVFDFLTWNKMDDNYLTMPRFIDKYGHTRYQTFIFTDENIYDDFDGYNWELVKRHCQRFNIGIIILCHPVHTETIKTKQLTSLPLTLIYGVNNLKTAEI---PSNDVLKLVKSPNVLKGDLPGKRHVLFHSKHPTFKTLMMTDSAFTGGRKRRDTGQQDLINFNEKHTLYSISKSAIALYDQGLFDGVRKFIFGVSFWESWLYQLVLMDCLQLSSNGFLGNDLQRYIQIDVDDIFVGKTGKRLVKEDVQAMIEAQEYLSTKITNFKFNIGYSGQRYQLSNDSREREGDAYLMQSDVHKHFRWFCHTSNHIKPHQF-SRDELIKDFEWNKKFAERFGLDVDHTYAVAPHHSGVYPVHDALYKAWQSVYGIQVTSTEGYPHLKPAYGRKGFLYEDIMVLPRQTCGLFTKTLSAATHPKGPTYLYDMTQGGELFWTILFNPILIFMTHMNNYGMKERLALSVFKNVTDFVDRWTNLRMQSIPPVEMANKYFELFPKQIEPLWTDPCDDLRHQLIWNHTNKYCIPDKRSTISRLPDVLILGPQKTGTTALLTFLAIHPDIVTSVRSNHSFEEIQFFNKRNYKFGLDWYLNFFPETRKSKDLVYIDKSANYFDSLKAPLRASSFLPQAKLVVILIDPRLRAYSWFQHMRSKSPMVPYPHTFYEVISTKNLTNDHEFDMLTAKCLLPGRYAESIERWLQYYDSSKLLVLDGDELKHKPIMTMSKVQTFLRLSP-YPFHKHITYSSKKKYFCRFFH-NKHYCLGKGKGRDYGKMTGKEWQFLSNYYHXXXXXXXXXXXXXXXIIPVWLQKEIDLVQ 3108
+VL+F S+ S + A+ S + + + D +P D G +Y I+ + Y D +N EL++++C +++ II H + ++ + QL PL L NNL + P + +L + K+P V KG LPG+ +F H T++ +++T+ + ++ TL+ A + D GL DG+++ +FG + WL++L+ +D + S L L RYI +D+DDIFVGK G R+ +DV+A++E Q L T++ NF FN+G+SG+ Y + E EGD L++S F WF H +H++PH F + L++ NK+FA G+ ++ YAVAPHHSGVYPVH LY AW+ V+GIQVTSTE YPHLKPA RKGF++ IMVLPRQTCGLFT T+ +P GP L +GGELF TIL NPI IFMTH++NYG +RL L F N+ +FV WTNL++Q++PPV++A++YFELFP+Q +PLW +PCDD RH+ IW+ + T LP L++GPQKTGTTAL FL +HP I++++ S +FEE+QFFN NY G+DWY++FFP + +KSANYF S +AP RA+S +P+AK++ ILIDP RAYSW+QH RS FYEVIST + + L +CL+PG YA IERWL Y+ +S+LL++DG +L+ P M +VQ FL ++P Y + + +T+ +K ++C+ K CLGK KGR Y M + FLSNYY N++L LL +LG+ +P WL++E+ V+
Sbjct: 79 TVLLFVESQYSQLGQDIIAILESSRFQYHMVIAPGKGD----IPPLTDN-GKGKYTLVIYENILKYVSMDSWNRELLEKYCVEYSVSIIGF-HKANENSLPSTQLKGFPLNLF---NNLALKDCFVNPQSPLLHITKAPKVEKGPLPGEDWTIFQYNHSTYQPVLLTE-----------LQTEKSLSSLSSKTLF-----ATVIQDLGLHDGIQRVLFGNNL-NFWLHKLIFIDAISFLSGKRLTLSLDRYILVDIDDIFVGKEGTRMNVKDVKALLETQNLLRTQVANFTFNLGFSGKFYHTGTE-EEDEGDDLLLRSV--DEFWWFPHMWSHMQPHLFHNESSLVEQMILNKEFALEHGIPINMGYAVAPHHSGVYPVHIQLYAAWKKVWGIQVTSTEEYPHLKPARYRKGFIHNSIMVLPRQTCGLFTHTIFYKEYPGGPQELDKSIRGGELFLTILLNPISIFMTHLSNYG-NDRLGLYTFVNLVNFVQSWTNLKLQTLPPVQLAHQYFELFPEQKDPLWQNPCDDKRHKDIWS---------REKTCDHLPKFLVIGPQKTGTTALYLFLLMHPSIISNLPSPKTFEEVQFFNGNNYHKGIDWYMDFFPTPSNTTSDFLFEKSANYFHSEEAPRRAASLVPKAKIITILIDPSDRAYSWYQHQRSHEDPAALRFNFYEVISTGHWAPS-DLKTLQRRCLVPGWYAVHIERWLTYFATSQLLIIDGQQLRSDPATVMDEVQKFLGVTPRYNYSEALTFDPQKGFWCQLLEGGKTKCLGKSKGRKYPPMDPESRTFLSNYYRDHNVELSKLLHRLGQPLPSWLRQELQKVR 872 The following BLAST results are available for this feature:
BLAST of TCONS_00000215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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