|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000239 ID=TCONS_00000239|Name=TCONS_00000239|organism=Clytia hemisphaerica|type=transcript|length=3422bpRun BLAST on NCBI protein sequence of TCONS_00000239-protein >TCONS_00000239-protein ID=TCONS_00000239-protein|Name=TCONS_00000239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=691bp MEKDLNDREERIEQLEHEIQVERDTIKSKEDLIEELTIQLEELKETLEMKRun BLAST on NCBI transcript from alignment at sc0000001:2079465..2112567- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000239 ID=TCONS_00000239|Name=TCONS_00000239|organism=Clytia hemisphaerica|type=transcript|length=33103bp|location=Sequence derived from alignment at sc0000001:2079465..2112567- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:2079465..2112567- >TCONS_00000239 ID=TCONS_00000239|Name=TCONS_00000239|organism=Clytia hemisphaerica|type=CDS|length=2076bp|location=Sequence derived from alignment at sc0000001:2079465..2112567- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000239 vs. Swiss-Prot (Human)
Match: MYLK (Myosin light chain kinase, smooth muscle OS=Homo sapiens GN=MYLK PE=1 SV=4) HSP 1 Score: 268.085 bits (684), Expect = 2.905e-73 Identity = 127/302 (42.05%), Postives = 209/302 (69.21%), Query Frame = 3
Query: 2040 VSKAFEQSEEISRGKFGKVYKMVARATGDTYAAKYIKV-TPKLREDVLNTIDIMKKIHHVRLMNLFDVYDLGSQIVMILEYVGGGMLFERIVEKN-SLTEAECALYIKQVLQGXXXXXXQNIAHLELKPENIICVNRSNMDIKIIDFGLAKQLSHDKPIKITAGSPEFVAPEILSFDPVSLNSDLWSVGVITYILLSGISPFIGDDDNDTLMNVSCGEYEYDDQAFGQITNDAKSFIDKLLVSNPKKRGNVGRCLQHPWINSNWQSKQS-KINLGNLKTFLKKHKEKVNVSARGAIRRFSSF 2936
VS ++ E + GKFG+V+++V + T +A K+ K + K +E++ I IM +HH +L+ D ++ + IVM+LE V GG LFERI++++ LTE EC Y++Q+ +G+ ++H Q I HL+LKPENI+CVN++ IK+IDFGLA++L + +K+ G+PEFVAPE+++++P+ +D+WS+GVI YIL+SG+SPF+GD+DN+TL NV+ +++DD+AF +I++DAK FI LL + K R + +CLQHPW+ + ++ ++ K++ +K ++ + K + +A AI R SS
Sbjct: 1460 VSDFYDIEERLGSGKFGQVFRLVEKKTRKVWAGKFFKAYSAKEKENIRQEISIMNCLHHPKLVQCVDAFEEKANIVMVLEIVSGGELFERIIDEDFELTERECIKYMRQISEGVEYIHKQGIVHLDLKPENIMCVNKTGTRIKLIDFGLARRLENAGSLKVLFGTPEFVAPEVINYEPIGYATDMWSIGVICYILVSGLSPFMGDNDNETLANVTSATWDFDDEAFDEISDDAKDFISNLLKKDMKNRLDCTQCLQHPWLMKDTKNMEAKKLSKDRMKKYMARRKWQKTGNAVRAIGRLSSM 1761 The following BLAST results are available for this feature:
BLAST of TCONS_00000239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.