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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000245 ID=TCONS_00000245|Name=TCONS_00000245|organism=Clytia hemisphaerica|type=transcript|length=1656bpRun BLAST on NCBI protein sequence of TCONS_00000245-protein >TCONS_00000245-protein ID=TCONS_00000245-protein|Name=TCONS_00000245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp MSGKKYQNFGDDANIEEQEEQHSHEQPSISDGPTLNSIPHAKVVPGLLCGRun BLAST on NCBI transcript from alignment at sc0000001:2167115..2179540- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000245 ID=TCONS_00000245|Name=TCONS_00000245|organism=Clytia hemisphaerica|type=transcript|length=12426bp|location=Sequence derived from alignment at sc0000001:2167115..2179540- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:2167115..2179540- >TCONS_00000245 ID=TCONS_00000245|Name=TCONS_00000245|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0000001:2167115..2179540- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000245 vs. Swiss-Prot (Human)
Match: GGT7 (Glutathione hydrolase 7 OS=Homo sapiens GN=GGT7 PE=1 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 2.130e-19 Identity = 118/433 (27.25%), Postives = 197/433 (45.50%), Query Frame = 3
Query: 462 QDGFKVLIVIAVVFSTIIGLTLIIDISLRKTHKPLQ--VVTDHPECTSLVRELMDTTDSNAVDGAVAGMFCLAITRPDLTSLASGGFMIYHS--EDKSSGLDFQMEAPG---DKTIISP--------VALPGLVEGLLKTHQLHGSTKLARLLESCITLAKNGFKVYKKTVEGEFGFFEKNMQIMLSKH--GNGIVPLQEGDILRLPEVSKLLYQI---------SRGNLKPYQDDIIEKVKDLGW--TSEMFKSYQSKELALLK---TSLKNGVTLLTLPPPSSGIVSLLATKYLD-YLLPETSTPLDKYFTIAETLKSTFENQSRLLDE--PSNLHEKIAELLQKDD---IDGVVKSIKSTVDNKIPRQTATGKTPAHPKLDVKSANVLVIDHNNQVAAISSSLGHSFGNKQMTKSGVVLNNGMKLFPSSW 1649
QDG V++ + F+T + + L++ I Q VVTD CTSL E++ S+ VD AVA CL I P + L GG M+ H ++S +DF+ APG ++T+ V +PG+V+GL + HQL+G +++L +A++GF V NM + +G PL G +L P+++++L + + GNL +++ + + G T E F +Y AL++ + G +L+ PPP +G + A L+ + L + +AETLK SRL D S + E + ++L K + + G + ++ +P G A A VL++ ++ + A+ SSL FG+ +T SG++LN+ M F SW
Sbjct: 104 QDGLTVIVTACLTFATGVTVALVMQIYFGDPQIFQQGAVVTDAARCTSLGIEVLSKQGSS-VDAAVAAALCLGIVAPHSSGLGGGGVMLVHDIRRNESHLIDFRESAPGALREETLQRSWETKPGLLVGVPGMVKGLHEAHQLYGRLPWSQVLAFAAAVAQDGFNVTHDLARALAEQLPPNMSERFRETFLPSGRPPL-PGSLLHRPDLAEVLDVLGTSGPAAFYAGGNLT---LEMVAEAQHAGGVITEEDFSNYS----ALVEKPVCGVYRGHLVLSPPPPHTGPALISALNILEGFNLTSLVSREQALHWVAETLKIALALASRLGDPVYDSTITESMDDMLSKVEAAYLRGHINDSQAAPAPLLPVYELDGAPTA--------AQVLIMGPDDFIVAMVSSLNQPFGSGLITPSGILLNSQMLDF--SW 517 The following BLAST results are available for this feature:
BLAST of TCONS_00000245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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