TCONS_00000396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000396
Unique NameTCONS_00000396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000396 ID=TCONS_00000396|Name=TCONS_00000396|organism=Clytia hemisphaerica|type=transcript|length=2631bp
AACAATGTAACGCTACTGGTAAGACACCAGTCTATGAAAGCTGGTTACAA
GGAACATTACCAAATCTACTCATCATCATACCATATTAAATGGCATCAAA
TGAAGACACAGTCAAAGAGGTTGTGCTAACAAACGGAAAACAACTAACTG
CAATCAACGAAGACTATACATCGACCATCGACCCTGGCACTCCTATAATT
GTCAACAATGATCAATCTAGCTCGTCGCCAGCAAATCCTGGTTCAAAACC
AAATGAAGACATCTTGCTCCCGAGTTCACAGAGACGTAATTCAAAACAAA
GCGACAGCCCTGTACCCCCGAATTCACAGAGACGTAATTCAAAACAAAGC
GACAACCCTGTACCCCCGAATTCATCGAGACGTAACTCAAAACAAAGCGA
CCCTGAAGTGCCAAATTCACCGAGACGTAACTCTAAGCAAAGCGAGAGCC
CTACGCTGCCAAATTCACAGAGACGTAATTCAGAACAAAGTGAAGACTCA
AATTCACAGAAACGTAACTCTAAACAAAGCGAGAGCCCTGTGCTCCCGAA
CTCACAGAGGCGTAATTCAAAACAGAGCGACGATCCTGTAAACCCAAAGT
CCCGATCACGCAATTCCAAACAAAGCGAAGATTTAAATTCACAGAGACGT
AGCTCAAAACAACAAGAAAGTCCTAAAGACTTTGATCTCGAAGAAAACGC
ACTTACAATTTTACCCAGAGTAAACAATGTTTTATCTCCAAGTGATACAT
CATTTGAAGAAATCGTTTTGTGTGACCCCCCACTGGCAAATAGAAAACCA
TCAAAAAGCGCAATTAAAAGATTCAAAGCTAACAACAAGCAGGATGAAAC
AACAAAGTCTTCACTTAAAAAGAGTCCACTTTTGGCCGGGCTTTCAGGCA
TAAAACAGAAATTTAGTTCAGTTCGCTTCAGCTCGATTCTAGACATACAT
ATCCCGTCCGAAACTCATCCCCAGAGCGATGAGCCAAGCTATGCAGTTAG
CATTGAGGGAAATGAACCTCCATATGATTTTGATCAACAATATGGACGAT
TACCGAGGCCAACAATGGCGGCACCACAACCTCGAACACGTATCTATAAA
ACTCGTTGGTACATTCTTGCCGTTTTTACGGCGTACGTTGCAATGCAGTA
TTTTATATGGAACTCCTTTGGACCCATCGCATCTTCAGTTAAAACAGCTT
ATGGATGGGAAAATTCAGATATTACATTGTTAGCCAGTTGGGATACCATT
CTATATGTGATTTTTTCGTTAGAAGTTTGTTGGCTAGTGCAAAAAAGAGG
TTTAAGGAAATCATTTCTCTGTTCATTGTTTCTGGTGGTCATTGGAGCTT
TATTTCGTTGCTTTGCTGTCCGAGAAACAAAAGTCAAAACGTACATGAAC
ACCGGACAAATCTTAAACGGTCTTGGTGGGATGTTAGCACAAGCTGCTGG
TCCTGTGGTCTCCAGTAATTGGTTCCCACCAGATGAGCGGACCCGAGCCA
CCGCTATTTCCACTTTAGCATCACAAGGCGGGCTTGCTCTATCTTATATC
ATTGGACCAGCTATAGTCAAGGAAGAAGCACACATTCGGGAAAGTTTCCC
AAACATCACAACACGCGCTTTAGAAGCGGAGCTACGAGATGAGATCAGCA
CTTTCATGTACAAAGAACTTCTAGTCACATGTTTTATAACAGCATGTGCT
ATGCTTTATTTCCCTAACAAGCCCAAACTACCACCATCACTGTCCGCTAG
TTTAACAAAACTACAGTTTCGTGATGGATTTAAAAGACTTTTTAAAATGA
GAAATTATTGGTATATTCTGTTCATTGCTGCATCTTCAACTGGTATCTAC
AGTGGTTGGGCAGCTGTGTTGTATTTGAACCTAAGTGATCATGGTCTTGG
CATCACACAAagtgAATGTGGTTTAATGGGTTTTGCTTCAACAGTGTTCA
GCGCAATCGGCGGAATAGCGCTTGGTTATTTATCGGACAAGTGGCCCGGA
CACATGAGACATTTATTGATCATATTATTTAGTTTGGCTTTTATCATGTT
TTGTTGGATCACAGTGATTTGTTTGAAAGTGTTTACTTATAGATTGGATA
TGTTGTACATTCCATGTCTGATTGGTGGCTTTTGTATCAACGGATCAACT
CCCTTGATGTACGAGATGATCATAGAATTAACTTACCCTATACCAGAAAC
TGTCAGCATCGGATTTCTTGGTGTGGTCAATAATATCTTCACTTTTGCTT
TTTTGTTGCTCTTCAACGTCCCTAAAATAGGTGTTGTATGGACAAATTGG
TGTTTGATAGCTACTTGCTTCATATGTCTATTACTCCTTACAAGATTCAA
AGAGAAATATTATCGCATGAAAATTGATGGCATTTCGGTGACATCAATTG
AAAGGAGAGTAGAAAGTACTATCGAAAGAAGACTACACGGAATAAATTCG
ATGGCACCAACAGCTAAAAGGTTTATCTCTGATATGAGAGGGATTGCTGT
TGTTAGTTTTTCAAGCGATGACATCATTACCTCACCCAATTTGGAGCCAA
CACCTAACCGAAGCTACAGTTATTGATGGAAATAACACGGCTAATGCAAA
TAAACCAGCAACAACTTTGAAACTGTAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00000396-protein

>TCONS_00000396-protein ID=TCONS_00000396-protein|Name=TCONS_00000396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=828bp
MASNEDTVKEVVLTNGKQLTAINEDYTSTIDPGTPIIVNNDQSSSSPANP
GSKPNEDILLPSSQRRNSKQSDSPVPPNSQRRNSKQSDNPVPPNSSRRNS
KQSDPEVPNSPRRNSKQSESPTLPNSQRRNSEQSEDSNSQKRNSKQSESP
VLPNSQRRNSKQSDDPVNPKSRSRNSKQSEDLNSQRRSSKQQESPKDFDL
EENALTILPRVNNVLSPSDTSFEEIVLCDPPLANRKPSKSAIKRFKANNK
QDETTKSSLKKSPLLAGLSGIKQKFSSVRFSSILDIHIPSETHPQSDEPS
YAVSIEGNEPPYDFDQQYGRLPRPTMAAPQPRTRIYKTRWYILAVFTAYV
AMQYFIWNSFGPIASSVKTAYGWENSDITLLASWDTILYVIFSLEVCWLV
QKRGLRKSFLCSLFLVVIGALFRCFAVRETKVKTYMNTGQILNGLGGMLA
QAAGPVVSSNWFPPDERTRATAISTLASQGGLALSYIIGPAIVKEEAHIR
ESFPNITTRALEAELRDEISTFMYKELLVTCFITACAMLYFPNKPKLPPS
LSASLTKLQFRDGFKRLFKMRNYWYILFIAASSTGIYSGWAAVLYLNLSD
HGLGITQSECGLMGFASTVFSAIGGIALGYLSDKWPGHMRHLLIILFSLA
FIMFCWITVICLKVFTYRLDMLYIPCLIGGFCINGSTPLMYEMIIELTYP
IPETVSIGFLGVVNNIFTFAFLLLFNVPKIGVVWTNWCLIATCFICLLLL
TRFKEKYYRMKIDGISVTSIERRVESTIERRLHGINSMAPTAKRFISDMR
GIAVVSFSSDDIITSPNLEPTPNRSYSY
Run BLAST on NCBI

transcript from alignment at sc0000002:36021..40946+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000396 ID=TCONS_00000396|Name=TCONS_00000396|organism=Clytia hemisphaerica|type=transcript|length=4926bp|location=Sequence derived from alignment at sc0000002:36021..40946+ (Clytia hemisphaerica)
AACAATGTAACGCTACTGGTAAGACACCAGTCTATGAAAGCTGGTTACAA
GGAACATTACCAAATCTACTCATCATCATACCATATTAAATGGCATCAAA
TGAAGACACAGTCAAAGAGGTTGTGCTAACAAACGGAAAACAACTAACTG
CAATCAACGAAGACTATACATCGACCATCGACCCTGGCACTCCTATAATT
GTCAACAATGATCAATCTAGCTCGTCGCCAGCAAATCCTGGTTCAAAACC
AAATGAAGACATCTTGCTCCCGAGTTCACAGAGACGTAATTCAAAACAAA
GCGACAGCCCTGTACCCCCGAATTCACAGAGACGTAATTCAAAACAAAGC
GACAACCCTGTACCCCCGAATTCATCGAGACGTAACTCAAAACAAAGCGA
CCCTGAAGTGCCAAATTCACCGAGACGTAACTCTAAGCAAAGCGAGAGCC
CTACGCTGCCAAATTCACAGAGACGTAATTCAGAACAAAGTGAAGACTCA
AATTCACAGAAACGTAACTCTAAACAAAGCGAGAGCCCTGTGCTCCCGAA
CTCACAGAGGCGTAATTCAAAACAGAGCGACGATCCTGTAAACCCAAAGT
CCCGATCACGCAATTCCAAACAAAGCGAAGATTTAAATTCACAGAGACGT
AGCTCAAAACAACAAGAAAGTCCTAAAGACTTTGATCTCGAAGAAAACGC
ACTTACAATTTTACCCAGAGTAAACAATGTTTTATCTCCAAGTGATACAT
CATTTGAAGAAATCGTTTTGTGTGACCCCCCACTGGCAAATAGAAAACCA
TCAAAAAGCGCAATTAAAAGATTCAAAGCTAACAACAAGCAGGATGAAAC
AACAAAGTCTTCACTTAAAAAGAGTCCACTTTTGGCCGGTAAGGAATTTC
TAGACTACCTTAAGGGACCtgatttttgcgggaactaaattttgcggttt
ttgcgTATTTAGACCCAAGCCGTAAAATTAAGTTTCcgccaaatttttcg
aaatgcgaaaaacaaaggtcgaataattcacagtacggctctaattttct
ttcaagtgagaaatccgcaaagttaagttcccgcaaatattaaatattaa
atcttgaaccgcgaaccgcaaaaattagttcctgcaaaaaatagtgttca
gacgttacggtttcgtacCTCTCCGGTGTGGTATTTGTTACGGATAGgaa
gtgttcatattggtttcgaaAAGTTTCGGGGAAACGAAGCAGAGCAGTTC
CGTTCCAATaaaaatagtggagcgaaactGTTTCGAAACAGTTTGTAACG
ACTTCTTTTTTAACGTTTCGAATtctgacgttcacacttgtttcggaacc
gtttcgtttcggataTCGTTacaaaccgtaacgtctgaacgcGGTCTCAG
AAACGTTAAAACAGAAGGCGTCAATTTCCTTTTTATCCATGATTACGACT
TAAGGTTGTAGAGAAATAAAAGCAATTAGTTTCTACTTGGGAAATAAGCT
ATCTTAACTTCACCTCGAATCAAAGTTCCTAACGAACCAACAACACATCC
CCTCGTGGTCATCATTCTAATCAAATGcttacaaaattatttttctgaca
ATAGAAAAGGTACTCCACCAAAAACTAAAGAGATGCGAGTCAATGCATAC
TATTCATATTTTCATTAACAAAAATTGATTCATTTTCAGGGCTTTCAGGC
ATAAAACAGAAATTTAGTTCAGTTCGCTTCAGCTCGATTCTAGACATACA
TATCCCGTCCGAAACTCATCCCCAGAGCGATGAGCCAAGCTATGCAGTTA
GCATTGAGGGAAATGAACCTCCATATGATTTTGATCAACAATATGGACGA
TTACCGAGGCCAACAATGGCGGCACCACAACCTCGAACACGTATCTATAA
AACTCGTTGGTACATTCTTGCCGTTTTTACGGCGTACGTTGCAATGCAGT
ATTTTATATGGAACTCCTTTGGACCCATCGCATCTTCAGTTAAAACAGCT
TATGGATGGGAAAATTCAGATATTACATTGTTAGCCAGTTGGGATACCAT
TCTATATGTGATTTTTTCGTTAGAAGTTTGTTGGCTAGTGCAAAAAAGAG
GTAAGTACAAAATTCTCTTACAATCAATAGGTCATTATTAGGAATCTTAC
CATTTTATGCCAAAACGCTCTGGCTGTTTTAAAAGTTGAAACTCGTAGTA
GAGGTAATAATAATTCAAAGGGCCATAACTTCCGATAGCATATTCTGCTT
gctttttattgcattttctgGGGTTACTAGCGACTTCGCAGGATTTTGAC
ATAAGAACTAACAAGAGCTTTGTATAACAGGGGAAGGTATATTATCCTCA
CATTATGGCGAAATTATTTTAACAGTTAATTATGTTTCTAAAATTCAGGT
TTAAGGAAATCATTTCTCTGTTCATTGTTTCTGGTGGTCATTGGAGCTTT
ATTTCGTTGCTTTGCTGTCCGAGAAACAAAAGTCAAAACGTACATGAACA
CCGGACAAATCTTAAACGGTCTTGGTGGGATGTTAGCACAAGCTGCTGGT
CCTGTGGTCTCCAGTAATTGGTTCCCACCAGATGAGCGGACCCGAGCCAC
CGCTATTTCCACTTTAGCATCACAAGGCGGGCTTGCTCTATCTTATATCA
TTGGACCAGCTATAGTCAAGGAAGAAGCACACATTCGGGAAAGTTTCCCA
AACATCACAACACGCGCTTTAGAAGCGGAGCTACGAGATGAGATCAGCAC
TTTCATGTACAAAGAACTTCTAGTCACATGTTTTATAACAGCATGTGCTA
TGCTTTATTTCCCTAACAAGCCCAAACTACCACCATCACTGTCCGCTAGT
TTAACAAAACTACAGTTTCGTGATGGATTTAAAAGACTTTTTAAAATGAG
AAATTATTGGTATATTCTGTTCATTGCTGCATCTTCAACTGGTATCTACA
GTGGTTGGGCAGCTGTGTTGTATTTGAACCTAAGTGATCATGGTCTTGGC
ATCACACAAGTTAGTAGACTTATTATCTTTCAGACTTACAgtttgacgct
ctctaattcgatttccaAAGGGAAagggattttcatcgaataatggagcg
tatagAGCGTAGTTTATAAGACTTAAAGACTTAAAAAAGTATATTATGCA
ATAATTTTTCATGCTTTCTTAAGTTACGGTAATTTCCACCGTtttggaag
caaacgttcgactTTTTGGAAGCGATCCCTTTCACAAATCGAACGTTTAC
TCCCATAATGTCAAGTTACGTAATTTAACAAAATATAAATacctcaacaa
caacaaaaggcAATTTCACGGTCAAAACGAGTCATGACggtaattagaaa
aaaaaactaataacgACTTCCCGGGGTTGATCATAATAATATcgaatttt
taaattgtttggCCAATAGTAATAGGGAGAGGGTATATAGATCCTGAATT
GCCAATGATTCTCTTCGACcgtgaaaaagctttttttttattttagagtg
AATGTGGTTTAATGGGTTTTGCTTCAACAGTGTTCAGCGCAATCGGCGGA
ATAGCGCTTGGTTATTTATCGGACAAGTGGCCCGGACACATGAGACATTT
ATTGATCATATTATTTAGTTTGGCTTTTATCATGTTTTGTTGGATCACAG
TGATTTGTTTGAAAGTGTTTACTTATAGATTGGGTAAGTGATTTTTTGCT
GGCGCAATGCTCTATGGCTAATCTTTTGGTCCTACAGCAGATAGGTCTGA
ATCTCAAAGAACCACAATCCGATGATATTCAATATTCCTCAGATTTTTGA
AGAATTGAGGGCTTCAAAGTTTTAGGGCTCATTTTGCAAAACAAATAATA
ATTAAACGGTTTCTTCCCATCCGCAAGATTTAATACCCCCTGAAAAACCG
TTTTCCCCGACTATCCGCCCAATAAAATTCAcgccaaaatttcatttttt
caaggtacattgtagaattttttttttcatttccccCTTAGATATGTTGT
ACATTCCATGTCTGATTGGTGGCTTTTGTATCAACGGATCAACTCCCTTG
ATGTACGAGATGATCATAGAATTAACTTACCCTATACCAGAAACTGTCAG
CATCGGATTTCTTGGTGTGGTCAATAATATCTTCACTTTTGCTTTTTTGT
TGCTCTTCAACGTCCCTAAAATAGGTAAGAAATTCGTTTTAATGAAAATC
AGTCAAGACAAAGAATGTATAATGAATGACTCAATTGTTAACAAGACAAA
TGTCAATCTGACAGAATCGACGATCAATTCAATAAACCTtattggagttt
ttgatttttctaaaatagcGATGCATTGttggattgtttcgagtgtatta
attacaatagaattcactcgaggaattcctaagaaaaatcaaaaactcca
ataaggtctattgaaccaaatcgaacggATGTCTTTGGACAATTTACTTT
TAACAATTTCTCAAAACTCatgaaaaacaatgaaactaatGAAAGTAACC
AAACTTCAACAAAAAGTTATTGGACCTTATAAAAAGCGTTTAAACATAAT
TTTATTACATTTCTTATTTTCTTAGGTGTTGTATGGACAAATTGGTGTTT
GATAGCTACTTGCTTCATATGTCTATTACTCCTTACAAGATTCAAAGAGA
AATATTATCGCATGAAAATTGATGGCATTTCGGTGACATCAATTGAAAGG
AGAGTAGAAAGTACTATCGAAAGAAGACTACACGGAATAAATTCGATGGC
ACCAACAGCTAAAAGGTTTATCTCTGATATGAGAGGGATTGCTGTTGTTA
GTTTTTCAAGCGATGACATCATTACCTCACCCAATTTGGAGCCAACACCT
AACCGAAGCTACAGTTATTGATGGAAATAACACGGCTAATGCAAATAAAC
CAGCAACAACTTTGAAACTGTAAAAG

Coding sequence (CDS) from alignment at sc0000002:36021..40946+

>TCONS_00000396 ID=TCONS_00000396|Name=TCONS_00000396|organism=Clytia hemisphaerica|type=CDS|length=2487bp|location=Sequence derived from alignment at sc0000002:36021..40946+ (Clytia hemisphaerica)
ATGGCATCAAATGAAGACACAGTCAAAGAGGTTGTGCTAACAAACGGAAA
ACAACTAACTGCAATCAACGAAGACTATACATCGACCATCGACCCTGGCA
CTCCTATAATTGTCAACAATGATCAATCTAGCTCGTCGCCAGCAAATCCT
GGTTCAAAACCAAATGAAGACATCTTGCTCCCGAGTTCACAGAGACGTAA
TTCAAAACAAAGCGACAGCCCTGTACCCCCGAATTCACAGAGACGTAATT
CAAAACAAAGCGACAACCCTGTACCCCCGAATTCATCGAGACGTAACTCA
AAACAAAGCGACCCTGAAGTGCCAAATTCACCGAGACGTAACTCTAAGCA
AAGCGAGAGCCCTACGCTGCCAAATTCACAGAGACGTAATTCAGAACAAA
GTGAAGACTCAAATTCACAGAAACGTAACTCTAAACAAAGCGAGAGCCCT
GTGCTCCCGAACTCACAGAGGCGTAATTCAAAACAGAGCGACGATCCTGT
AAACCCAAAGTCCCGATCACGCAATTCCAAACAAAGCGAAGATTTAAATT
CACAGAGACGTAGCTCAAAACAACAAGAAAGTCCTAAAGACTTTGATCTC
GAAGAAAACGCACTTACAATTTTACCCAGAGTAAACAATGTTTTATCTCC
AAGTGATACATCATTTGAAGAAATCGTTTTGTGTGACCCCCCACTGGCAA
ATAGAAAACCATCAAAAAGCGCAATTAAAAGATTCAAAGCTAACAACAAG
CAGGATGAAACAACAAAGTCTTCACTTAAAAAGAGTCCACTTTTGGCCGG
GCTTTCAGGCATAAAACAGAAATTTAGTTCAGTTCGCTTCAGCTCGATTC
TAGACATACATATCCCGTCCGAAACTCATCCCCAGAGCGATGAGCCAAGC
TATGCAGTTAGCATTGAGGGAAATGAACCTCCATATGATTTTGATCAACA
ATATGGACGATTACCGAGGCCAACAATGGCGGCACCACAACCTCGAACAC
GTATCTATAAAACTCGTTGGTACATTCTTGCCGTTTTTACGGCGTACGTT
GCAATGCAGTATTTTATATGGAACTCCTTTGGACCCATCGCATCTTCAGT
TAAAACAGCTTATGGATGGGAAAATTCAGATATTACATTGTTAGCCAGTT
GGGATACCATTCTATATGTGATTTTTTCGTTAGAAGTTTGTTGGCTAGTG
CAAAAAAGAGGTTTAAGGAAATCATTTCTCTGTTCATTGTTTCTGGTGGT
CATTGGAGCTTTATTTCGTTGCTTTGCTGTCCGAGAAACAAAAGTCAAAA
CGTACATGAACACCGGACAAATCTTAAACGGTCTTGGTGGGATGTTAGCA
CAAGCTGCTGGTCCTGTGGTCTCCAGTAATTGGTTCCCACCAGATGAGCG
GACCCGAGCCACCGCTATTTCCACTTTAGCATCACAAGGCGGGCTTGCTC
TATCTTATATCATTGGACCAGCTATAGTCAAGGAAGAAGCACACATTCGG
GAAAGTTTCCCAAACATCACAACACGCGCTTTAGAAGCGGAGCTACGAGA
TGAGATCAGCACTTTCATGTACAAAGAACTTCTAGTCACATGTTTTATAA
CAGCATGTGCTATGCTTTATTTCCCTAACAAGCCCAAACTACCACCATCA
CTGTCCGCTAGTTTAACAAAACTACAGTTTCGTGATGGATTTAAAAGACT
TTTTAAAATGAGAAATTATTGGTATATTCTGTTCATTGCTGCATCTTCAA
CTGGTATCTACAGTGGTTGGGCAGCTGTGTTGTATTTGAACCTAAGTGAT
CATGGTCTTGGCATCACACAAagtgAATGTGGTTTAATGGGTTTTGCTTC
AACAGTGTTCAGCGCAATCGGCGGAATAGCGCTTGGTTATTTATCGGACA
AGTGGCCCGGACACATGAGACATTTATTGATCATATTATTTAGTTTGGCT
TTTATCATGTTTTGTTGGATCACAGTGATTTGTTTGAAAGTGTTTACTTA
TAGATTGGATATGTTGTACATTCCATGTCTGATTGGTGGCTTTTGTATCA
ACGGATCAACTCCCTTGATGTACGAGATGATCATAGAATTAACTTACCCT
ATACCAGAAACTGTCAGCATCGGATTTCTTGGTGTGGTCAATAATATCTT
CACTTTTGCTTTTTTGTTGCTCTTCAACGTCCCTAAAATAGGTGTTGTAT
GGACAAATTGGTGTTTGATAGCTACTTGCTTCATATGTCTATTACTCCTT
ACAAGATTCAAAGAGAAATATTATCGCATGAAAATTGATGGCATTTCGGT
GACATCAATTGAAAGGAGAGTAGAAAGTACTATCGAAAGAAGACTACACG
GAATAAATTCGATGGCACCAACAGCTAAAAGGTTTATCTCTGATATGAGA
GGGATTGCTGTTGTTAGTTTTTCAAGCGATGACATCATTACCTCACCCAA
TTTGGAGCCAACACCTAACCGAAGCTACAGTTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000268XLOC_000268Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000396-proteinTCONS_00000396-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000396-exon-sc0000002-1491911889:36021..36908TCONS_00000396-exon-sc0000002-1491911889:36021..36908Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1510915933:36021..36908TCONS_00000396-exon-sc0000002-1510915933:36021..36908Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1575043694:36021..36908TCONS_00000396-exon-sc0000002-1575043694:36021..36908Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1491911889:37710..38120TCONS_00000396-exon-sc0000002-1491911889:37710..38120Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1510915933:37710..38120TCONS_00000396-exon-sc0000002-1510915933:37710..38120Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1575043694:37710..38120TCONS_00000396-exon-sc0000002-1575043694:37710..38120Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1491911889:38419..39029TCONS_00000396-exon-sc0000002-1491911889:38419..39029Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1510915933:38419..39029TCONS_00000396-exon-sc0000002-1510915933:38419..39029Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1575043694:38419..39029TCONS_00000396-exon-sc0000002-1575043694:38419..39029Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1491911889:39517..39703TCONS_00000396-exon-sc0000002-1491911889:39517..39703Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1510915933:39517..39703TCONS_00000396-exon-sc0000002-1510915933:39517..39703Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1575043694:39517..39703TCONS_00000396-exon-sc0000002-1575043694:39517..39703Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1491911889:40012..40194TCONS_00000396-exon-sc0000002-1491911889:40012..40194Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1510915933:40012..40194TCONS_00000396-exon-sc0000002-1510915933:40012..40194Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1575043694:40012..40194TCONS_00000396-exon-sc0000002-1575043694:40012..40194Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1491911889:40596..40946TCONS_00000396-exon-sc0000002-1491911889:40596..40946Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1510915933:40596..40946TCONS_00000396-exon-sc0000002-1510915933:40596..40946Clytia hemisphaericaexon
TCONS_00000396-exon-sc0000002-1575043694:40596..40946TCONS_00000396-exon-sc0000002-1575043694:40596..40946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:36021..40946 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.146481	0.114274	0.729755	0.535464	0.0592614	0.140488	0.0941623	0.0528922	0.0493748	0.0917379	0.029681	0.0780445	0.058452	0.0809373	0.0415884	0.0892615	0.175941	0.13525	0.12457	0.30959	0.0566505	0.0414482	0.151157	0.0916159	0.518992	0.575476	0.040171	0	0.0162583	0.0662584
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00000396 vs. Swiss-Prot (Human)
Match: DIRC2 (Disrupted in renal carcinoma protein 2 OS=Homo sapiens GN=DIRC2 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 4.011e-61
Identity = 151/444 (34.01%), Postives = 240/444 (54.05%), Query Frame = 3 
Query: 1074 PQPRTRIYKTRWYILAVFTAYVAMQYFIWNSFGPIASSVKTAYGWENSDITLLASWDTILYVIFSLEVCWLVQKRGLRKSFLCSLFLVVIGALFRCFAVRETKVKT-YMNTGQILNGLGGMLAQAAGPVVSSNWFPPDERTRATAISTLASQGGLALSYIIGPAIVKEEAHIRESFPNITTRALEAE-----LRDEISTFMYKELLVTCFITACAMLYFPNKPKLPPSLSASLTKLQFRDGFKRLFKMRNYWYILFIAASSTGIYSGWAAVLYLNLSDHGLGITQSECGLMGFASTVFSAIGGIALGYLSDKWPGHMRHLLIILFSLAFIMFCWITVICLKVFTY---RLDMLYIPCLIGGFCINGSTPLMYEMIIELTYPIPETVSIGFLGVVNNIFTFAFLLLFNVPKIGVVWTNWCLIATCFICLLLLTRFKEKYYRMKID 2378
            P P  R+Y  RW +L +F+    +Q  +WN++GPI +S + AYG+ + DI LL  W  I ++       WL+ KRGLR + L + FL+V+G   RC  + +  +K   ++ GQ+LNGL G     A P +S+ WF  DER  ATAI+++ S  G A ++++GP +V          PN T+  L AE     ++D I   +Y E  V C I +  + YFP +P LPPS++A+  +L +R    RL     +  I    A   G+++GW+ VL L L+     ++Q + G +GF S V   + GIA+   +D   G ++ +L++LFS A +   W T+ CL   T+       LY  C++ G  +N S P+ +E+ +E  YP+PE ++ G +  ++N+F    L         + W NWCL  +C + LLL+  F+E Y R+ +D
Sbjct:   42 PGP-GRVYGRRWLVLLLFSLLAFVQGLVWNTWGPIQNSARQAYGFSSWDIALLVLWGPIGFLP-CFAFMWLLDKRGLRITVLLTSFLMVLGTGLRCIPISDLILKRRLIHGGQMLNGLAGPTVMNAAPFLSTTWFSADERATATAIASMLSYLGGACAFLVGPLVVPA--------PNGTSPLLAAESSRAHIKDRIEAVLYAEFGVVCLIFSATLAYFPPRPPLPPSVAAASQRLSYRRSVCRLLSNFRFLMIALAYAIPLGVFAGWSGVLDLILTPAH--VSQVDAGWIGFWSIVGGCVVGIAMARFADFIRGMLKLILLLLFSGATLSSTWFTLTCLNSITHLPLTTVTLYASCILLGVFLNSSVPIFFELFVETVYPVPEGITCGVVTFLSNMFMGVLLFFLTFYHTELSWFNWCLPGSCLLSLLLILCFRESYDRLYLD 473
The following BLAST results are available for this feature:
BLAST of TCONS_00000396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DIRC24.011e-6134.01Disrupted in renal carcinoma protein 2 OS=Homo sap... [more]
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