TCONS_00000402 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000402
Unique Name	TCONS_00000402
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3033

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000002:119386..125916+
coding sequence from alignment at sc0000002:119386..125916+

transcript sequence

>TCONS_00000402 ID=TCONS_00000402|Name=TCONS_00000402|organism=Clytia hemisphaerica|type=transcript|length=3033bp
TTAAGTAGCCTTGTACTATCAATCCATATGGTATAAGAGCATCTGATcca
aatttggtgtttttttataaattcgGACATTTTTACACTGATCACTACTT
agaaatttattaaatttaGTGAAATGTATACATGTACTACATAAAAGCAG
GGAAAATTCCGGGCAGTAGAGGGTAAATATTGTCCCAAATCTTCCCAGAA
TCTTATACATATAATTTTCTTTCCATTCAAGTGaaattagaaataaaata
tataatgTCTCAATAATACAAAAACCATGTACCAGCAAGGTAGTAGTGGT
TACTATGGTGACGGTGGTGGCCAATACCATGATgaaggaaatcaaaatca
atatgGCCATAACTACAGAGACTATCGTATGAATGACCAAAGCATTAAag
gaaaaattgaacaaaaatattggaaaactAAACAGAAAGCTATTGAGAAG
TTAGGCAAAGATCAAGATGAATTTGTTATTGCTGGGGATGCTGAAGTTGA
TGCACGGTTGGAGGCATTTCAACACATCAAAATCACGTGTATGCAATTGA
TGGCAGCAATAGAATgctatcaaaataaaatatttgCTTTATCACAAGAT
GAAAATGAGATGGGTAGATTTCTAAAAGATCAAGGATCTCTTGACAAAAC
CAAAGCTGGTAAAATGATGATAGCTGTTGGTAAAGCGCAAAGTTTTGCTG
CGCAACAAAGgCTTGGAATGAGATCATCATTAGCACGTTTGTATTCAGAA
ATAGAAACATTCAGATTTCGTGCTATCCAAGATACACAATTAACAGTCAC
CAAGATGGAAACCTCTCGATCAGAATATCGTGCTCGGCTATTATGGATGG
CTGATATATCAAAAGAGCTTGACCCTGACCAATTCAAACGTTTGGATAAA
TTTCGAGATGTACAAATGCAAGTCAAactggcaaaaaaaaaatttgatca
gTTGAAGGGTGATGTCATTCAAAAGATTGATCTTTTATCAGCAAGTCGTT
GCAATCTTCTATCTGCAACACTAGAGCCCTACCAAAGCTCTATGGTCAAA
TTCTTGAACACTACTGCTAAGAGTTATAATACTGTTCATGAAGAATACAA
AGGCCATCCGTCCTACAAATTCAACattctaaaaaatatcattCCAAACA
ATGGTATTGtggatgatgaagaagatgatCTCGCCAACGATCAAGACAAC
AAATCATCCAACAAAGAGAACAGAAGGAAAAAGAAAACTGCAAAACCTGA
ACAAGCAGAAGAAGCAACAGAAGAAAAAACATCTAATGATGACGACGGTG
ATGACAAACTGATCAATTTCGATTCTTCACCTTCGGAAGATGTGGACCAA
GGTGTTGTTCCGAAGCCTACCGAAAGAGATGCAGATTTGCTTGGTGCATC
ATTAGATCAAGACTCAAGCCCTGGGTTCGGTGATTATACTGAAACTAAAG
ACAACAACGAAGGATTTGAAGATTTACTTGgcaaatttgaagaaaacaat
GTACTAGCTGACAAACCATCGCATCAACCTTCGCTGATTTCAACATCGAC
AGAAGATACTTCCGATCCTTTTTCATTCATCAGTAATTTGGATTCTGACA
GGCGTAAAAGTGATACAACACCACCAACTAAAGATTCACTACCAGAGCCT
TCAGTTGATGACCTACTCTTCGGTTCACCAAACCGTAAACTGGATGGCAC
CGAGAAAACAGATTTGGACATCCTAACTGATGTGTTATCCAACCAAAATC
TCGGTATTACTGAAACAGAACATAATAAGTCGTTCAGTGATCAATGGCAG
TCTATGTTTGGTGCTGGTGTATCTGAGGAATCAACACCATCAATGTCTGA
CCTTCTTGCTCAAGATCTGGAAAATAGTAAAAGCGATTCTACACCAAAAC
AACCTGAGAATATGGTTGATGCTAACATCAAGAGTGATCGAATGTATATG
CCATCCTTTTTATTGGAGCAAATGAGAAAAACTGATCCacaagctttgaa
aaatggtcCTCCCAAGGGTGCATTAGCTGTCAAAGACTCTGCCAAAGCCA
GTTCTGGTAAGCCTGGTAAAAGTGGAGAGAAAGGAAAAGACATGTCTGCA
TGGTTCAATCTGTTTGCTGATTTGGATCCACTTGCAAACCCGGATGATAT
AGGCGATTCTAAAGATGGCCAGAGTGAAAAACAAGCCTGCTAAAGTTTGA
ATCAAATGAATCTATTATCGTTTGCTCCTCCTTGAAATCTACTCAAAATG
TGTTTTTATcagatgttgatattttttaccAAGAAGTTATTTAAAAGCCA
AGCTGTATAATTGTCATCGTTCAAATAATGCGAATTCATCCCAAATTCCT
GTGTTAAATCTGGATATGTCCAAAGATGGAGTTGTGTAAATGCTATTATG
CTAAAGTTGTCCAAGATTTATTGAATCAGATATGCAAGCTTGTCACTTTT
ATCCTCTGTGATTGTAATCATATGATCCAAAGCTTGGCTTAAAATGACAT
AACTCATCTCAAAGGGCTACAAAGCTTTTGTTCGGTCGCTTCCTTCAGAT
TTCTTTCGATTCTAGGGTTAATTTTAGCCTCAAAATGATGGTTAGTGTAG
CGTAgcttttatactattttttGGGTTTAGTTTTATTGAATTTAGAGGGT
GTCCTTAGCTATTTTTGTTTCGAAATCGAGACaacaattatttatttttt
atttacaaactTATAGTATTATAAATTTATGCAggataaaatattatttt
gatcttttttttctcttttcttttctgtggtgaaataattttgaatttta
ctgTGAAGCTAGTAAATAATGATAAAGGTACATGAAAAAAATGGAATtgt
attttaaatgaatttgaaaagaaaggtGAAgaaattcttacatttttttg
tgtttgacCCAAAATGGCTGGTTTCCACTTTCCCTGACTTTCAAGGTATT
GAAACTTTTCATCATGGTTAACTAGTGCATAAAATAGATCCCTTCATGGA
CTACTTCATTTTGTACTTCTTGGAGTATCCTAG

Run BLAST on NCBI

protein sequence of TCONS_00000402-protein

>TCONS_00000402-protein ID=TCONS_00000402-protein|Name=TCONS_00000402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=638bp
MYQQGSSGYYGDGGGQYHDEGNQNQYGHNYRDYRMNDQSIKGKIEQKYWK
TKQKAIEKLGKDQDEFVIAGDAEVDARLEAFQHIKITCMQLMAAIECYQN
KIFALSQDENEMGRFLKDQGSLDKTKAGKMMIAVGKAQSFAAQQRLGMRS
SLARLYSEIETFRFRAIQDTQLTVTKMETSRSEYRARLLWMADISKELDP
DQFKRLDKFRDVQMQVKLAKKKFDQLKGDVIQKIDLLSASRCNLLSATLE
PYQSSMVKFLNTTAKSYNTVHEEYKGHPSYKFNILKNIIPNNGIVDDEED
DLANDQDNKSSNKENRRKKKTAKPEQAEEATEEKTSNDDDGDDKLINFDS
SPSEDVDQGVVPKPTERDADLLGASLDQDSSPGFGDYTETKDNNEGFEDL
LGKFEENNVLADKPSHQPSLISTSTEDTSDPFSFISNLDSDRRKSDTTPP
TKDSLPEPSVDDLLFGSPNRKLDGTEKTDLDILTDVLSNQNLGITETEHN
KSFSDQWQSMFGAGVSEESTPSMSDLLAQDLENSKSDSTPKQPENMVDAN
IKSDRMYMPSFLLEQMRKTDPQALKNGPPKGALAVKDSAKASSGKPGKSG
EKGKDMSAWFNLFADLDPLANPDDIGDSKDGQSEKQAC

Run BLAST on NCBI

transcript from alignment at sc0000002:119386..125916+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000402 ID=TCONS_00000402|Name=TCONS_00000402|organism=Clytia hemisphaerica|type=transcript|length=6531bp|location=Sequence derived from alignment at sc0000002:119386..125916+ (Clytia hemisphaerica)
TTAAGTAGCCTTGTACTATCAATCCATATGGTATAAGAGCATCTGATcca
aatttggtgtttttttataaattcgGACATTTTTACACTGATCACTACTT
agaaatttattaaatttaGTGAAATGTATACATGTACTACATAAAAGCAG
GGAAAATTCCGGGCAGTAGAGGGTAAATATTGTCCCAAATCTTCCCAGAA
TCTTATACATATAATTTTCTTTCCATTCAAGTGaaattagaaataaaata
tataatgTCTCAATAATACAAAAACCATGTACCAGCAAGGTAGTAGTGGG
TAAGATATAATTTCTTTTCTCAATGAAATGTGAGCATCAATTATCGCGTA
CCTATATGTGATCCAAAGGTGATACCAGGCCAAGCTCTAGAAGGGTAGAG
ACATGGCAGGACTGTTTATACTAAAGATCAAAAAGGCTCTTTTTTACATG
ATTCCAAAGACCAAGAATAAATGGTCTAGATACAACTTTACCAGGCATAA
TGCTACAATTAATGCTAAATAATGAATGTTTATTACCTAGTTACTATGGT
GACGGTGGTGGCCAATACCATGATgaaggaaatcaaaatcaatatgGCCA
TAACTACAGAGACTATCGTATGAATGACCAAAGCATTAAaggaaaaattg
aacaaaaatattggaaaactAAACAGAAAGCTATTGAGAAGTTAGGCAAA
GATCAAGATGAATTTGTTATTGCTGGGGATGCTGAAGTTGATGCACGGTT
GGAGGTAATTGGGTTTTTAGATAGAACTAATGTCATTTTTGTTCTTGAAT
AGTAAGTATTGATCGTGTAAATAAGTCCTGAAAGAGTAATTATTTTTATT
GCTATACTTTTAATATCATTACAACCATTGATTACTCGTTTAACAGGCTG
GACTGACCCTTGACAAAACAACAAATTGATTTTGCATCACCTAATTTATT
TCCTCAAATGATTGAAAATAACATCCTGTTTTTCTTCTAGGCATTTCAAC
ACATCAAAATCACGTGTATGCAATTGATGGCAGCAATAGAATgctatcaa
aataaaatatttggtAAGTGAAATTACTTTCTTCCTTGATCATTGTTATC
CTTGTGTCTTTGATTTGAATCATCCAGTAAACATACTGATGAGGAAGGGG
ATTGAGCTTAGAGAACTTGGCGAGGCTCCTGACTTGTTGTATTTATGTGC
TTTCAAGCACATTTCAGGTagcttttaaaaacaaacagcAATAAAGTTTA
AAAGCTACAGGGTAATACCAGTGTTAAACAATAAAAGATCTGTCTCCTCA
AAATTGTTAAGTTgctttttaatttcaatattgttgaTCGTTTTCATAGC
TTTATCACAAGATGAAAATGAGATGGGTAGATTTCTAAAAGATCAAGGAT
CTCTTGACAAAACCAAAGCTGGTAAAATGATGATAGCTGTTGGTAAAGCG
CAAAGTTTTGCTGCGCAACAAAGGTAATGATCAATGTTTATATTTGAATA
AACTTTAGGAGAATTAGTAGAATTATTGGGAGTTCCAATATGAATAAACA
AAAGATGGGTTAGCAGCCAATATATAGTTTGTTCAAAACTTCTTAGAATA
TTGTCGCAATTTCTATAAAATGATTAAatattttcctcatttttaggCTT
GGAATGAGATCATCATTAGCACGTTTGTATTCAGAAATAGAAACATTCAG
ATTTCGTGCTATCCAAGATACACAATTAACAGTCACCAAGATGGAAACCT
CTCGATCAGAATATCGTGCTCGGCTATTATGGATGGCTGATATATCAAAA
GAGCTTGACCCTGACCAATTCAAACGTTTGGATAAATTTCGAGATGTAAC
TTTCcttacttttttcttcttcacaaTTTAATAACATTTCTGTAATCAGC
TGTAATATGAAATAtgttcagaaattttcaaagttcacTCAGTCTAATAA
ATTCTAACCTTTGATCATTTCAGGTACAAATGCAAGTCAAactggcaaaa
aaaaaatttgatcagTTGAAGGGTGATGTCATTCAAAAGATTGATCTTTT
ATCAGCAAGTCGTTGCAATCTTCTATCTGCAACACTAGAGCCCTACCAAA
GCTCTATGGTCAAATTCTTGAACACTACTGCTAAGAGTTATAATACTGTT
CATGAAGAATACAAAGGTTGGTTGCCCTGActgttgttttttaatttatt
ttgttcTAATTTCTTCTGGCTGAGACAAATATCtctctaaaatttttaaa
aagtgggTTCTCCATCTtgaaattctgcaaaatttatAAAGATATTAAGA
ATCTAGGCTTTTGTCTTAGAAGAAAAAATTGCGTTGACCacttttagctt
aaaaaaatGTCTCAAATTAACTTGTAACTTCTTCAGATCAGAAAGATTTG
TAAACGTTCCTACTGCtggattttttaagaaaaaaaagcaTTGAACCAAC
CTAGAAAATTctagaaaattcataaaattaatAAGAATCTGGGCCGTTGT
CTGATAggaaaaaaatttgctttgactgTCTTAAATTAACTTAACCTTCC
TTTTTAAACACATTTAAACTTTTTCCTAGGCCATCCGTCCTACAAATTCA
ACattctaaaaaatatcattCCAAACAATGGTATTGtggatgatgaagaa
gatgatCTCGCCAACGATCAAGACAACAAATCATCCAACAAAGAGAACAG
AAGGAAAAAGAAAACTGCAAAACCTGAACAAGCAGAAGAAGCAACAGAAG
AAAAAACATCTAATGATGACGACGGTGGTATGTCTCTGACCAGCTTTGGT
GTCGCTAAAAGTTCAACATTTAGATCCCCAAACTCAcatctttttttagt
tttatctGTTTTCTTGGGACAGAATGAATTTTTGAACTGTTGAATTAGCC
CAGTAGGCAGACGCTTTTTAATATAGACGATATCATATGATTATGATTAC
TTTTATTAATATTGATAATTTCACATTTCACATTTTCAGATGACAAACTG
ATCAATTTCGATTCTTCACCTTCGGAAGATGTGGACCAAGGTGTTGTTCC
GAAGCCTACCGAAAGAGATGCAGATTTGCTTGGTGCATCATTAGATCAAG
ACTCAAGCCCTGGGTTCGGTGATTATACTGAAACTAAAGACAACAACGAA
GGTATAATTGTACGATCTTGTACGATAGCTATTATATTGTATAATTGTAA
GTCTGACtctcttgaatttgaaaagcttAAAAATGCGGTAAAATTACATT
GTATTTTTGGACATACCCcagtggggtggaggtcctataaattaacctgt
gttcgttcgtccgtccgttcgtctgttaccaacttatctcaggattgaat
cataggaattttttgatttttggtacaaaggtgcaaaatggtggtggtca
aaatgtgacggagcccgatttcaaaaaaaaaaattggggggttaaatttg
ggccaaaaaacggctaaaaacgggttttttggactttgtgaaaaattgga
tcattaattttttctaatcttttgcatgaaagtagggtaccaacataggt
aaaagatggctcaagcagatttttgcaaaaaaaattttttagctcaaaaa
acgcaagtttatctataagaatcactattaataagcatacatcaatgttc
ttagtcacattactcaattttttcagagatagatgtttttttttgctcat
gagggcttacttttgaagaatatgtgtgtttagacatgaaattttggttg
cttgatTTGTTTTCATAGagaaactggccaaattcgatatttttctataa
gcacattatcaattacttttttaggtattagcttttctcaagattggctc
tttcattctttatgaatttttgcacaaagatggataactataaaccctct
aatgtgacggagcctgattttcaaaaaaaaaatgtttttgggcaattttg
ggccaaaagcggctaaaaaaagggttttttggactttgtgaaatattgga
tcattgttttttttagactttttgcatgaaagtaggtaaaacatggctca
agcagattttcgtaaaaaaagaatttttcagctcaaaaaacgcatcttta
tctataagaatcactattaacatgcatacatcaatgttcttagccaaatt
actaaattttttgatgagatagatgttttcttttgctcacaaagtcttca
atatgaaagaatattttcaagagtattaaattttggtttctaaacgtttt
tttataagaaacaaacgactaactttaattaatagatcgtcactatttgt
gttctgaatgattgtttaacgatcatgctcacgtagatatcaattatata
tgtgttaaatgcataaccaggtaggtccataaaagtatcacttgtttatc
aaaaaaaaatttacatgtAAAGCACTTCAATTGTAATTACAGAAGATAGT
CGAAATTAACGAGTGTTTCATTTGTTCTACTTTTCTTGTGGGAATGATAA
TCGCAAGTACCGTtgcatttgatattttaaagttTAAGTTCACGGTAAGA
ATAATTTTAACGCTTCATTATTACTTGCAGGATTTGAAGATTTACTTGgc
aaatttgaagaaaacaatGTACTAGCTGACAAACCATCGCATCAACCTTC
GCTGATTTCAACATCGACAGAAGATACTTCCGATCCTTTTTCATTCATCA
GTAATTTGGATTCTGACAGGCGTAAAAGTGATACAACACCACCAACTAAA
GGTGATATAATTTACTGCTCAAGTTAACTTCAATTCAAGTTATTGGTCTT
TGTTTAAAGTTTGCTTTAGGGTTTATGATATTAATAAATGGATAAGGAAA
TAAaaggttttgatatttctttcatTGTATTAAGCCGTTCAGTAATTTTG
CTTGGGAAATGTTCATTTTATAAACTCTCACAATTACTAGTGGTAGTGAG
GCAAGATTACTTTGAATATAACCTGAAGTTTGCAACCAAAAGGTTGTACC
CCATCAGGATAAATAACTGTCAACCATCATTTTACCATACAGAAATTTTC
ATCTTATTCATAGATTCACTACCAGAGCCTTCAGTTGATGACCTACTCTT
CGGTTCACCAAACCGTAAACTGGATGGCACCGAGAAAACAGATTTGGACA
TCCTAACTGATGTGTTATCCAACCAAAATCTCGGTATTACTGAAACAGAA
CATAATAAGTCGTTCAGTGATCAATGGCAGTCTATGTTTGGTGCTGGTGT
ATCTGAGGAATCAACACCATCAATGTCTGACCTTCTTGCTCAAGATCTGG
AAAATAGTAAAAGCGATTCTACACCAAAACAACCTGAGAATATGGTTGAT
GCTAACATCAAGAGTGATCGAATGTATATGCCATCCTTTTTATTGGAGCA
AATGAGAAAAACTGATCCacaagctttgaaaaatggtcCTCCCAAGGGTG
CATTAGCTGTCAAAGACTCTGCCAAAGCCAGTTCTGGTAAGCCTGGTAAA
AGTGGAGAGAAAGGAAAAGACATGTCTGCATGGTTCAATCTGTTTGCTGA
TTTGGATCCACTTGCAAACCCGGATGATATAGGCGATTCTAAAGATGGCC
AGAGTGAAAAACAAGCCTGCTAAAGTTTGAATCAAATGAATCTATTATCG
TTTGCTCCTCCTTGAAATCTACTCAAAATGTGTTTTTATcagatgttgat
attttttaccAAGAAGTTATTTAAAAGCCAAGCTGTATAATTGTCATCGT
TCAAATAATGCGAATTCATCCCAAATTCCTGTGTTAAATCTGGATATGTC
CAAAGATGGAGTTGTGTAAATGCTATTATGCTAAAGTTGTCCAAGATTTA
TTGAATCAGATATGCAAGCTTGTCACTTTTATCCTCTGTGATTGTAATCA
TATGATCCAAAGCTTGGCTTAAAATGACNTTGCAAGCTTGTCACTTTTAT
CCTATGTGATTGTAATCATATGATCCAAAGCTTGGCTTAAAATGACATAA
CTCATCTCAAAGGGCTACAAAGCTTTTGTTCGGTCGCTTCCTTCAGATTT
CTTTCGATTCTAGGGTTAATTTTAGCCTCAAAATGATGGTTAGTGTAGCG
TAgcttttatactattttttGGGTTTAGTTTTATTGAATTTAGAGGGTGT
CCTTAGCTATTTTTGTTTCGAAATCGAGACaacaattatttattttttat
ttacaaactTATAGTATTATAAATTTATGCAggataaaatattattttga
tcttttttttctcttttcttttctgtggtgaaataattttgaattttact
gTGAAGCTAGTAAATAATGATAAAGGTACATGAAAAAAATGGAATtgtat
tttaaatgaatttgaaaagaaaggtGAAgaaattcttacatttttttgtg
tttgacCCAAAATGGCTGGTTTCCACTTTCCCTGACTTTCAAGGTATTGA
AACTTTTCATCATGGTTAACTAGTGCATAAAATAGATCCCTTCATGGACT
ACTTCATTTTGTACTTCTTGGAGTATCCTAG

Coding sequence (CDS) from alignment at sc0000002:119386..125916+

>TCONS_00000402 ID=TCONS_00000402|Name=TCONS_00000402|organism=Clytia hemisphaerica|type=CDS|length=1917bp|location=Sequence derived from alignment at sc0000002:119386..125916+ (Clytia hemisphaerica)
ATGTACCAGCAAGGTAGTAGTGGTTACTATGGTGACGGTGGTGGCCAATA
CCATGATgaaggaaatcaaaatcaatatgGCCATAACTACAGAGACTATC
GTATGAATGACCAAAGCATTAAaggaaaaattgaacaaaaatattggaaa
actAAACAGAAAGCTATTGAGAAGTTAGGCAAAGATCAAGATGAATTTGT
TATTGCTGGGGATGCTGAAGTTGATGCACGGTTGGAGGCATTTCAACACA
TCAAAATCACGTGTATGCAATTGATGGCAGCAATAGAATgctatcaaaat
aaaatatttgCTTTATCACAAGATGAAAATGAGATGGGTAGATTTCTAAA
AGATCAAGGATCTCTTGACAAAACCAAAGCTGGTAAAATGATGATAGCTG
TTGGTAAAGCGCAAAGTTTTGCTGCGCAACAAAGgCTTGGAATGAGATCA
TCATTAGCACGTTTGTATTCAGAAATAGAAACATTCAGATTTCGTGCTAT
CCAAGATACACAATTAACAGTCACCAAGATGGAAACCTCTCGATCAGAAT
ATCGTGCTCGGCTATTATGGATGGCTGATATATCAAAAGAGCTTGACCCT
GACCAATTCAAACGTTTGGATAAATTTCGAGATGTACAAATGCAAGTCAA
actggcaaaaaaaaaatttgatcagTTGAAGGGTGATGTCATTCAAAAGA
TTGATCTTTTATCAGCAAGTCGTTGCAATCTTCTATCTGCAACACTAGAG
CCCTACCAAAGCTCTATGGTCAAATTCTTGAACACTACTGCTAAGAGTTA
TAATACTGTTCATGAAGAATACAAAGGCCATCCGTCCTACAAATTCAACa
ttctaaaaaatatcattCCAAACAATGGTATTGtggatgatgaagaagat
gatCTCGCCAACGATCAAGACAACAAATCATCCAACAAAGAGAACAGAAG
GAAAAAGAAAACTGCAAAACCTGAACAAGCAGAAGAAGCAACAGAAGAAA
AAACATCTAATGATGACGACGGTGATGACAAACTGATCAATTTCGATTCT
TCACCTTCGGAAGATGTGGACCAAGGTGTTGTTCCGAAGCCTACCGAAAG
AGATGCAGATTTGCTTGGTGCATCATTAGATCAAGACTCAAGCCCTGGGT
TCGGTGATTATACTGAAACTAAAGACAACAACGAAGGATTTGAAGATTTA
CTTGgcaaatttgaagaaaacaatGTACTAGCTGACAAACCATCGCATCA
ACCTTCGCTGATTTCAACATCGACAGAAGATACTTCCGATCCTTTTTCAT
TCATCAGTAATTTGGATTCTGACAGGCGTAAAAGTGATACAACACCACCA
ACTAAAGATTCACTACCAGAGCCTTCAGTTGATGACCTACTCTTCGGTTC
ACCAAACCGTAAACTGGATGGCACCGAGAAAACAGATTTGGACATCCTAA
CTGATGTGTTATCCAACCAAAATCTCGGTATTACTGAAACAGAACATAAT
AAGTCGTTCAGTGATCAATGGCAGTCTATGTTTGGTGCTGGTGTATCTGA
GGAATCAACACCATCAATGTCTGACCTTCTTGCTCAAGATCTGGAAAATA
GTAAAAGCGATTCTACACCAAAACAACCTGAGAATATGGTTGATGCTAAC
ATCAAGAGTGATCGAATGTATATGCCATCCTTTTTATTGGAGCAAATGAG
AAAAACTGATCCacaagctttgaaaaatggtcCTCCCAAGGGTGCATTAG
CTGTCAAAGACTCTGCCAAAGCCAGTTCTGGTAAGCCTGGTAAAAGTGGA
GAGAAAGGAAAAGACATGTCTGCATGGTTCAATCTGTTTGCTGATTTGGA
TCCACTTGCAAACCCGGATGATATAGGCGATTCTAAAGATGGCCAGAGTG
AAAAACAAGCCTGCTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000270	XLOC_000270	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000402-protein	TCONS_00000402-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000002	supercontig	sc0000002:119386..125916 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
67.2745	62.8346	29.9708	25.3556	110.173	80.326	116.405	124.264	65.1602	71.1782	49.6644	42.7881	37.54	30.0831	28.4633	35.0163	48.2393	46.3602	23.1303	34.0983	39.0876	39.9382	58.3235	56.9009	47.4787	51.1854	61.1878	43.8651	35.5569	40.6735

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR010504	AH_dom
IPR006723	Islet_autoAg_Ica1_C
IPR027267	AH/BAR-dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0019904	protein domain specific binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0019904	protein domain specific binding

Blast

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BLAST of TCONS_00000402 vs. Swiss-Prot (Human)
Match: ICA69 (Islet cell autoantigen 1 OS=Homo sapiens GN=ICA1 PE=1 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 2.837e-91
Identity = 141/268 (52.61%), Postives = 193/268 (72.01%), Query Frame = 1

Query:  337 GNQNQYGHNYRDYRMNDQSIKGKIEQKYWKTKQKAIEKLGKDQDEFVIAGDAEVDARLEAFQHIKITCMQLMAAIECYQNKIFALSQDENEMGRFLKDQGSLDKTKAGKMMIAVGKAQSFAAQQRLGMRSSLARLYSEIETFRFRAIQDTQLTVTKMETSRSEYRARLLWMADISKELDPDQFKRLDKFRDVQMQVKLAKKKFDQLKGDVIQKIDLLSASRCNLLSATLEPYQSSMVKFLNTTAKSYNTVHEEYKGHPSYKFNILKNI 1140
            G++  Y  + +D    D+S+  K++QKYW+TKQ  I+  GK +DE V+A DA++DA+LE F  I+ TC+ L  AI  YQ +I  LSQ+ENE+G+FL+ QG  DKT+AGKMM A GKA  F++QQRL +R+ L R + E+ETFR RAI DT LTV +ME  R+EYR  LLWM D+S+ELDPD +K+++KFR VQ QV+LAKK FD+LK DV QK+DLL ASRCNLLS  L  YQ++++ F   T+ +   +HE +KG+  Y+F  LK++
Sbjct:    3 GHKCSYPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLELFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALCFSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELDPDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHFWEKTSHTMAAIHESFKGYQPYEFTTLKSL 270

The following BLAST results are available for this feature:

BLAST of TCONS_00000402 vs. Swiss-Prot (Human)

BLAST of TCONS_00000402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ICA69	2.837e-91	52.61	Islet cell autoantigen 1 OS=Homo sapiens GN=ICA1 P...	[more]

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TCONS_00000402 (transcript) - C. hemisphaerica