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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000404 ID=TCONS_00000404|Name=TCONS_00000404|organism=Clytia hemisphaerica|type=transcript|length=5522bpRun BLAST on NCBI protein sequence of TCONS_00000404-protein >TCONS_00000404-protein ID=TCONS_00000404-protein|Name=TCONS_00000404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1688bp MLYRYGHVATGGHRQTPNNPMLSKNANGKRGDVVNHQRKSYKMVSQQPPMRun BLAST on NCBI transcript from alignment at sc0000002:131038..205617+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000404 ID=TCONS_00000404|Name=TCONS_00000404|organism=Clytia hemisphaerica|type=transcript|length=74580bp|location=Sequence derived from alignment at sc0000002:131038..205617+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:131038..205617+ >TCONS_00000404 ID=TCONS_00000404|Name=TCONS_00000404|organism=Clytia hemisphaerica|type=CDS|length=5067bp|location=Sequence derived from alignment at sc0000002:131038..205617+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000404 vs. Swiss-Prot (Human)
Match: KI26A (Kinesin-like protein KIF26A OS=Homo sapiens GN=KIF26A PE=1 SV=3) HSP 1 Score: 317.775 bits (813), Expect = 2.276e-87 Identity = 205/489 (41.92%), Postives = 285/489 (58.28%), Query Frame = 2
Query: 998 FPTNFTNMLKQSSPSNPPGLFKYMGRRVD-----GKVSVMLRVQPSINDQSDN---SLIEIDLRKKQISFLQPNAPSSTPLDANQAPPPSQPKYFGFDNIFTPEERHDRISSGSLLDVLHAVINGGDGALVTYGGPGTGKTRTMVGQDGSSTTAGILPCAIAWLYSLIDDCKQRTGARISIRVSAVEVVGRNEELKDLLADQASGTDSIDSHSASPGIYLREDPVGGINLENVSEPQAANKEKAGFYLDAALASRSAEKDNQG--VTQNSHMIFTFHIYQYRVEKNARKIPSGSVPQYSGGRSRLHLIDLSYVNQNFEEKTSQPSQAP---SHAALGQIMITMLNGNKKVTLFKDSKISRLLRDSIGNQTCRTTVIAHVSAEEKSARKTLQTLNITQKIQXXXXXXXXXXXXXXXXXXCDEGGK----PKFRVQHPLISTRAIEDTYNC--SDYNTSSAGEDSCDTVIYMGSSGGHLSDRDLTDNERPP 2407
+PT+F+ +L+ P PP L + + D GKV VMLR+ P+ Q S +++D RKKQ+ P A +A + PK F FD +F + + SG++ DVL +V++G DG + ++G GK+ TM+G+D S + GI+PCAI+WL+ LI++ ++RTG R S+RVSAVEV GR++ L+DLLA+ A G+ + SPG+YLREDPV G L+N SE +A EKA FYLDAALA+RS + G ++SHM+FT H+YQYR+EK R SGGRSRLHLIDL + P S +ALG +++ ++NG K V ++D +++ LLR+S+ CRTT+IAHVS +TL T+ + +I R RRK+ K SSSS S E G+ P R HP + T C D + SS+ E SCDTVIY+G G LSDR+LTDNE PP
Sbjct: 336 YPTDFSGVLQLWPPPAPPCLLRAASKTKDNPGSIGKVKVMLRIWPAQGAQRSAEAMSFLKVDPRKKQVILYDPAAGPPGSAGPRRAATAAVPKMFAFDAVFPQDSEQAEVCSGTVADVLQSVVSGADGCIFSFGHMSLGKSYTMIGKDSSPQSLGIVPCAISWLFRLIEERRERTGTRFSVRVSAVEVCGRDQSLRDLLAEVAPGS---LQDTQSPGVYLREDPVCGAQLQNQSELRAPTAEKAAFYLDAALAARSTSRAGCGEDARRSSHMLFTLHVYQYRMEKCGRG-------GMSGGRSRLHLIDLGSCEAAAGRAGEA-AGGPLCLSLSALGSVILALVNGAKHVP-YRDHRLTMLLRESLATAGCRTTMIAHVSDAPAQHAETLSTVQLAARIHRLRRKKAKYASSSSGGESSCEEGRARRPPHLRPFHPRTVALDPDRTPPCLPGDPDYSSSSEQSCDTVIYVGPGGAALSDRELTDNEGPP 812 The following BLAST results are available for this feature:
BLAST of TCONS_00000404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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