TCONS_00000480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000480
Unique NameTCONS_00000480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3123

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000480 ID=TCONS_00000480|Name=TCONS_00000480|organism=Clytia hemisphaerica|type=transcript|length=3123bp
CAAGTCTCTGCGCAGATAGTGCGGTCATAACATACGGTCATAACATAAGG
GTTACGAGCGAGGGTGTCAACAAGAGATGTGAAACATGTTTTTGGATGTT
ATTTTAAAGTATAAAATGTTGTTTTATTATAGTACCTGGATTTAAATTTA
TGGAAAAGACATATATGACTCCACTTGTCACTAAATGGAAAGATGCTTTT
GGTCCAACTTCGTCTACAATGAGTATTGTTGTTGAGCTGTTATGTTACAC
TACGTGTTACAGGCAAGGTGGTGATTCAGAGAAATTTGCTCGAAGAGCCA
TCGAAAGTCTGGTcaaaaaactgagaaaaaaggCTGATGAGCTTGAGAAT
TTAGTTATTGCTATTAAGTCAAAAGGAAGACAACCTTCAAAATGTGTTAC
AATACCGAGAACCTTAGATGGAAGGTTACAAGTTTGCGAAAGAAAAGGAT
TTCCCCATGTGATTTATTCCAGACTTTTTCGCTGGCCAGATATCCACAAA
ATGGAACTACGGCATTTAGATACCTGTCAATTTGCCTTTGATTTGAAGTA
TGACGTTGTCTGTGTGAATCCATATCATTATGAAAGAATTTCGTCAACCC
CGTCACAGTCAAGTGTTATTGACCCAGCTGGGTTTCACCATCGTGGTCCT
AGAAGCCAACCACCAGATTTATCTTCATCTACGATAAAGGCTCAACCTTT
GAATAGACCACACATACTAACTTTTAATGGTGGTCAAACACAGACTCCCA
TTCTACCACTGGCTGTTACGTATCCTCCACGAATGCCATGTGCTGCAGAC
CCTTTTCCTGTTATTGTACAACACCTTCTCTATCATACAAATTGGTATAA
AGAGTATAAAGATGGTATTGATTCAAATGACAATGGTTTTACGCGAAGAG
CAATTGAGTCTCTtgttaagaaattaaaaaagcGATATAATGAACTAGAT
GCATTAATTGCAGCTATCGTGTCTCAAGGTAGAATTGAAACTAAATGTGC
TACTGTTCAAAGGACGTTAGATGGACGACTACAAGTAGGGGAAAGGAAAG
ATTTCCCACATGTAACATATACTAGACTATGGCGCTGGCCTAATGTACAC
AAACTAGAATTGTGTAGTATAGACTCTTGTTTACATGGTTTTGACCGAAA
AGGTGGAAACATTTGTGTTAATCCTTATCATTATGACAGGGTAAAACCAC
CAGAATTACACACCTATCCTCCATCCATGGCACATGCTGAAAGCAAACGT
CTTGGTTCAACTTCTACTTCAACTACATCATCTCACaataattttcatca
ttttttcgaACGCAAACATCCTGATGCAGATAGAATGAGTATAGATGACA
AGTCTTCTTATTCTAGGCGGACAAAtAGTCCCAAACGGAAGTCCATTGAG
GAAGTTGAACATTACGAAAATGGATCAAATCGACCCCCTAAAGAAATGAA
GatCAGCAGTCCTGTACAGATACCTCACAAAGCAAGGAGTATATCAGATT
ACAGCTCAAGttCGAAAGAAGAATTACGCGGTGCTTCATCATCATTCAAT
AAGAACCTGATTACCTGTGCCTTCTGTTCGTGCAGTGAACAGCTACCCTG
GTTTAAAGGccaattcaaaagctatggacCCCTTTCTAAACTTGCTGGGT
CACCTTCAGCCAATGAAATCTTTCGACCTTACCTAGAAACAGATACCGTA
TCATCGCGTTCGGGAGGTGGACATTCTTCACCTGATCCTAAAGAATTCAA
CCCTTCGAGTGATGCGAATTCTCTCCCAATGCATGTTGGGTATTTCTTTC
GATCGAATATTCATTCCGTAGTAGACTATGAAGAAATGATATGGGCCCAT
AAATCTTGCATGGATTGGAGTATATGTACATCGAAAGCTGAGTCAGATAA
TCCGCTTGTCTTGGTTGGAAAAGCACTGTCTCAGTCATGTTCATTTTGTG
GAAGATTTGGTGCCAGTTTAGGCTGCTGCGTCCAAGACTGTAACAAATAC
TTTCATCTACCATGTGCCCTCTATTCAAGTACACTAGCActtcACAAGTC
AATGGAAATTTATTGTGCAGATCATCTGAAGTTCGTTCCGGAATCAGTCG
TGTGTCAGAAATGTGAGAATAATGAACATGTGGAGAATTTTGTCACCTGT
TCCGTTTGCAATTCCAATTTCCACGCCAGTTGCAAAACTCCCAGTATCCA
TTTAACCGGTAGACGAAAATTGACATTTCAATGTGAATCGTGCAGGAGTT
GTGCACTTTGCTCGTAAGTTGTTGCAGTATTAAAGATTGATaaacattga
tttttcaagttcatGGATTTGTTCTAAagtgtttttggacctacctggag
gtcctatagaTTAACcgttgttcgttcgttcgttcgttcgttcgttcgtt
cgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
ttcgttcgttagatttttctgatttttggcacaaagatgcaaaatagcaa
tgtccaaaatgtgacggaacccgatattcgaaaaaaaacttttccagcCG
CCGGAAAAGCtgttttttagcattttctcgagattttatcattagttttt
tctgtttttttgctcaaagatgcgtattaacaatgcccaaaacatggccg
agtccgatttttgagaagaatttttttccggccgaaaatgccggaaatcg
ccgtttttctggattttcatgggactttttcattataattggttgttttt
ttttcattcaaaaacattattaatagccatgcccaccatcaagcatgttt
caattttcaataaaactatttaaaaatcgccggaacaacctatatcttga
atttctcgaaCTGTACTTtacctaaaatgtgtcggagcctgatttttgaa
gaaaaaaagttttggcaaaaaatgccggaaatatgccgtcAAAGCCGGTT
TTTTGCCATTTTGTCGAGATTTCATTATTCCTTTTTCCCGATTTTCGCAC
AAAGATGTGTACCAGTAATGTCCTAAGTGTGGCCgatttggatttttgag
aatcatgtttttccggccgaaaatgtcagaagtatgccggaaatcgccgt
ttttgcaggtTTGAATTGagctt
Run BLAST on NCBI

protein sequence of TCONS_00000480-protein

>TCONS_00000480-protein ID=TCONS_00000480-protein|Name=TCONS_00000480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=705bp
MEKTYMTPLVTKWKDAFGPTSSTMSIVVELLCYTTCYRQGGDSEKFARRA
IESLVKKLRKKADELENLVIAIKSKGRQPSKCVTIPRTLDGRLQVCERKG
FPHVIYSRLFRWPDIHKMELRHLDTCQFAFDLKYDVVCVNPYHYERISST
PSQSSVIDPAGFHHRGPRSQPPDLSSSTIKAQPLNRPHILTFNGGQTQTP
ILPLAVTYPPRMPCAADPFPVIVQHLLYHTNWYKEYKDGIDSNDNGFTRR
AIESLVKKLKKRYNELDALIAAIVSQGRIETKCATVQRTLDGRLQVGERK
DFPHVTYTRLWRWPNVHKLELCSIDSCLHGFDRKGGNICVNPYHYDRVKP
PELHTYPPSMAHAESKRLGSTSTSTTSSHNNFHHFFERKHPDADRMSIDD
KSSYSRRTNSPKRKSIEEVEHYENGSNRPPKEMKISSPVQIPHKARSISD
YSSSSKEELRGASSSFNKNLITCAFCSCSEQLPWFKGQFKSYGPLSKLAG
SPSANEIFRPYLETDTVSSRSGGGHSSPDPKEFNPSSDANSLPMHVGYFF
RSNIHSVVDYEEMIWAHKSCMDWSICTSKAESDNPLVLVGKALSQSCSFC
GRFGASLGCCVQDCNKYFHLPCALYSSTLALHKSMEIYCADHLKFVPESV
VCQKCENNEHVENFVTCSVCNSNFHASCKTPSIHLTGRRKLTFQCESCRS
CALCS
Run BLAST on NCBI

transcript from alignment at sc0000002:1410311..1421246+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000480 ID=TCONS_00000480|Name=TCONS_00000480|organism=Clytia hemisphaerica|type=transcript|length=10936bp|location=Sequence derived from alignment at sc0000002:1410311..1421246+ (Clytia hemisphaerica)
CAAGTCTCTGCGCAGATAGTGCGGTCATAACATACGGTCATAACATAAGG
GTTACGAGCGAGGGTGTCAACAAGAGATGTGAAACATGTTTTTGGATGTT
ATTTTAAAGTATAAAATGTTGTTTTATTATAGTACCTGGATTTAAATTTA
TGGAAAAGACATATATGACTCCACTTGTCACTAAATGGAAAGATGCTTTT
GGTCCAACTTCGTCTACAATGAGTATTGTTGTTGAGCTGTTATGTTACAC
TACGTGTTACAGGCAAGGTGGTGATTCAGAGAAATTTGCTCGAAGAGCCA
TCGAAAGTCTGGTcaaaaaactgagaaaaaaggCTGATGAGCTTGAGAAT
TTAGTTATTGCTATTAAGTCAAAAGGAAGACAACCTTCAAAATGTGTTAC
AATACCGAGAACCTTAGATGGAAGGTTACAAGTTTGCGAAAGAAAAGGAT
TTCCCCATGTGATTTATTCCAGACTTTTTCGCTGGCCAGATATCCACAAA
ATGGAACTACGGCATTTAGATACCTGTCAATTTGCCTTTGATTTGAAGTA
TGACGTTGTCTGTGTGAATCCATATCATTATGAAAGAATTTCGTCAACCC
CGTCACAGTCAAGTGGTAGGACCTTCAAATTATTCCCAAAATTATGGTTC
AAACACTGTGAAAGTTTTTATTTGCcagtttttatttcattttgtagATT
GAGCCACATCTTGGCCTAGAAGAAGTTCTCAAACTCTCCTTTTCTGGTAG
AAATCAACCTGTCTTGTACACAAATACTTCGTAAAAAAAGGTTTCcttga
aaataaaactaaatttggggaatttttgcaaaattcatcaaaattcaaaa
acaaaaaaaaaattaataatttctGCCTCCAAAACTTATTTTTCCCTATA
AATTATAACCATTTTAACCGGTTACCTTCGCCAAAAGTAGTTTTCACCGG
AATTGCTATTTTCCAATAGCCAAAGTTAATATTTTGTCACACTTTTACAA
TCAACTTtactttaggtgtacaaactttggcgagcaaaaactttcgcaag
gtaaaaaaatcacgaaattcagGACATTTACTTTTGGAatgaggaaaaaa
tattttttgtgcgcataaaacttttgcgaatcatcattggataaaaatga
gaatttttaaacaaaaattagcTAAAAAGTGACAAATGTNaaaaatattt
tttgcgcgCATAAAACTTTTGCGAATCATCATTGgataaaatgagaattt
ttaaaCAGAAATTAGCTAAAAGGTGACAAATGTTCCTTGAATCCAATACG
GTTATTCCTTGACTTTAAAAAGGTGTCAAAGGCTAGAAATAAGctaaaaa
tgctaaatttattacgatttcgaagtcaatctttaaaaaaaatttcccca
aaCATAAACTTTTACAAATTACCCTGTTAAGAATTGTCAAAGACGTTAAC
TTGCTAAAGCTGCTGTGTGAGTGGTAGTCAACTAATGTtgatgaccacta
taccacagggCCCTTTAATGATGTTGGTAGACCAAACTGGATTTAACAAA
ACAATACTAAAATTTGGATATTGAAAacacaaaaattcattttaccATTA
CATATTGTTATAAATGGATTGTTAATCATTGAATCGTAATATAACTGGTA
GTAAAAAGTAATCCATATCCTTGATTAGCTATCGACAGTTGGACAGTTTA
CATTTCTATTCAGGGGACAAAGCACAGGTGATTTTCATAAATGTCCCTTA
TTAGAAGAAATTTCAACACAGTACTAAAATGAGATGGGGGGAAATTGGGG
TAAAAGGGCAACTGCTGAGGCAACTTTtgaccaaaaataaaatttcaaat
tctttttgatcCAGGGAAATTTCTCCAGAAAtggagtaatttttttaatc
catAATGAAGTGAACACTGCctctttttttgtttgaaatttcaaataaag
tAACAAAAAGAACTGCTAAGGCTGGACTTAATCAAATATTGGTTGCCGTA
ATCCGACTGAACCTACCTTAGAACCTGCCAATCCAAAAGAATTAATTGCC
ATTTTAACGAAGATTTTTTCCTTCACATCAGAACCTCTATTGATTCAAAA
TTATCCAAATATAAACTATAAACTGTTAGAAGACGacaaaccaaaatttt
gtccagTCTGATTTAATTTCCATATTTTAATAACTGAGATTTAACGATTC
TATTGGCTATCAGCACTGGAGCCTAGTTTTTTTTAGCAGAGTAGATCAGT
TGGACAAtagtttaatttaattttattaatttttcttgAGTTCCCAAAAA
TatctatataatttttttaaacatctttaTTCTATGTTTTAGTTATTGAC
CCAGCTGGGTTTCACCATCGTGGTCCTAGAAGCCAACCACCAGATTTATC
TTCATCTACGATAAAGGCTCAACCTTTGAATAGACCACACATACTAACTT
TTAATGGTGGTCAAACACAGACTCCCATTCTACCACTGGCTGTTACGTAT
CCTCCACGAATGCCATGTGCTGCAGACCCTTTTCCTGTTATTGTACAACA
CCTTCTCTATCATACAAATTGGTATAAAGAGTATAAAGATGGTATTGATT
CAAATGACAATGGTTTTACGCGAAGAGCAATTGAGTCTCTtgttaagaaa
ttaaaaaagcGATATAATGAACTAGATGCATTAATTGCAGCTATCGTGTC
TCAAGGTAGAATTGAAACTAAATGTGCTACTGTTCAAAGGACGTTAGATG
GACGACTACAAGTAGGGGAAAGGAAAGATTTCCCACATGTAACATATACT
AGACTATGGCGCTGGCCTAATGTACACAAACTAGAATTGTGTAGTATAGA
CTCTTGTTTACATGGTTTTGACCGAAAAGGTGGAAACATTTGTGTTAATC
CTTATCATTATGACAGGGTAAAACCACCAGGTAGGCTTATATAGATTTAT
ACTGACGACATGTTGAAACAATGTTACATTTGCTTGGTCAAGCAGTAAAC
TGGTGAATTTTGGGCAAGTACAACATAAGCGAGGTTAATCAAAGTCACAG
GCAGGAAATCTTCAGCATGAAATTAGCAAAACTTGTAGCATTAAATAGTG
CTTTAAAGTTTCACATTACCATTCTCTTTGTGCTACATTACTTACTATGG
GAGGTGGCGCTTCTGAATCTGAGAGATGAGAGTTCTGGAATTGGATAGAA
CAATTACCAGTATTCTTGTATTTTAGATACCTCTAGTGCTACCAGTATTT
CAACGAATTAACAGATATTTCATTTAGAGAAGAAAAATAGCACTCTCAGA
AGCCGCCTACTttaaattgttcaaaaatttgaaattaatacATTATTTTG
GCAATTCTGTTTAGAATTACACACCTATCCTCCATCCATGGCACATGCTG
AAAGCAAACGTCTTGGTTCAACTTCTACTTCAACTACATCATCTCACaat
aattttcatcattttttcgaACGCAAACATCCTGATGCAGATAGAATGAG
TATAGATGACAAGTCTTCTTATTCTAGGCGGACAAAGTAAGTGGCACAAT
TTGTTGAATGAGTAAAAGTAAGATTCTTTGCTCGAAGTCTAAAACCATCA
ATCTCTTAAATGGGTATTTTACTTGCATTTCCAGCTTGCAATAGTCTATC
ATGAATCAAATAGAAAACTGAATACATTGATAGGTACTCGATaattattt
taaatgttttatatTGTATTTATTTGAATTACTAGGATTTCTTTAAGCAc
gttgttaatttttttttcaacaatgatattcttatattttagtAGTCCCA
AACGGAAGTCCATTGAGGAAGTTGAACATTACGAAAATGGATCAAATCGA
CCCCCTAAAGAAATGAAGGTACTTTGTGTTGAAGGtctatgaaatttttg
aaacattatTGATGTCTAACCTTGCTTGTCCTGAAGTCAGTagcatggaa
attttttttcttcaaatttcattCAAGTGAGAAGAAATTATGCTGAACTA
AGTCTTATAAGGTTAGCACCAATATTTTAGGTTTTTTGCTTGCAATTCTT
CCAAATAAGTCACTGGGAAATCCCGATTTCAATGTTATGACCTGTATGAT
GTACAGAATTCTTCTTGTCTTCattcttttgattttcatattttcagatC
AGCAGTCCTGTACAGATACCTCACAAAGCAAGGAGTATATCAGATTACAG
CTCAAGGTATGTTCCTTTCTATTGTGATTATATATATTATACAGCTCATA
GAAAATAAGTGTACTAGGAAAATTATGTTTATCAACTTCTTTTATGTGAT
GTTGAAAGGATTTTTGAGTGATTCTTATTCTAAccttaaatgattttttc
tgtttCATTTTCTGTGTAAATGACTTTTGAAGTAGTCCTTGTAGTTGTTG
CTTAAAGCCTTGCTTTTTCTCTTGTACTTGAAAAAGAATGTTCTTGATTG
ATGTTTAAGCTGTTACTAGGGTGTCTGCCTTTTGTGAAAAAGTTGTTTAG
TTAAACATTAAATTCTTTTTGGTTATAATGCTTTAACTTTCTATCAGGTC
ATTCTGACCTGGAATTTTTTGCAAGTTGCATAATTATAGGCTCTCTTCTT
TAATTCTTGTTTGGATTCAAAATCCCATGTTGCTTTCGAACAAGTCTTTC
ATTCTTTTAGTACCTTTTTGCACCTAAATCTGCTAAAGATTTTAGTAAAG
TTTTCTTTATGTGTTGTTACTGTATTTGAATACGGGACCTTTTTCTCATT
ATTTGCCTCAAAATGTTGgtgaatatgttttttttgtgtacacAAGTTTC
TTCACTATCAATTTAAGAAGGctttttgtgaaaatgaagCTAAGAAAATG
GGTAATAATGTTATGTAAAGAAAATTGATTAAGATCTAAACatgcttttt
gttttgttttgggaTATTAGTAATGTTTGTTGTTACATTATAAAAATGCA
TGTAAGACGGAGATAAAGAAAAATACATCTTGTTTTTCCTGTTCATTCAT
GTTTTGATTCATAATATTATGTTCTTTTTCGTGTATTACATATGTTGGAG
ATGAATTTTAACACTACTAGCAGACAATAGAAAACAAGAGAGAAAAATCT
TAAGTAGcttttctctctttctctttcctcagttttttttttttacaaca
aCACAAAAACGGTGTTTTTGAATGAATTGCGGAGAGAATCATTTCGTATT
TTCCACAAATTTCCATGAATTTTCTctgtttgatttcttttttacttttc
atgcACCATTCACAATATAGGTGTACCAGATTCCCCTTTTTTACTGCGTC
ACATTCCtactaaaatatatttaatttaaTACATGTGGtatgaaattaca
aaaattcCTCTCTAGGACGATAGCAATCGTTATTATAAGCCTCTTTCTAA
CGGTAGATTATAGTGTGTATTTctatgtaaagtttttttgtaatAATTCA
TTCAATAAAGTGACACTTTTTATCATATGGTTGTATCTACATATTATAAA
GAAGCCAAAAGAATGTCATTCATAATTTCATGTCTACTAATATCTTGATA
AAGAGCAGTCTGTTGTAAAATATAAGCTATTGATGATTTGTGATGCTGAg
ggcttgttttttttctttatttccttTTTACCATTGGTAAGCTCTCGAAG
CACTGCCaagttttatcaaaagaatttAGACAATCTTATTGTATGTGCAT
AATCAGCATGTTTTTCAACTGTGTTGACTTATTTAAGAGCTCTTcgaata
aagtaaaaaaaaaacgtatatgtATATTAAGTAAGATGAAgcaataaaaa
gtgaaaccttttggaaaaaaacaataaaaaagaaagagctattgtttaat
ttaatgACTTTCGGACAAGCAATTAAACAGTATATAAATAATTAAACAGG
AATGCTCGTTTGGCAAGATTCACGCTCTATGATTGCTTGTATAAAAGACA
CCGCCATTCTTCTAATGAATTACtgtagctttttttttttacttcgtAAT
TTTCCCTCGGTCCAATGCTCTAAAGttacattttgagatttttcaataat
ttccatctttataagaatttcaTTTGATGTCCATTCATTGctagaaattt
ttacttccacCCCTCCTGGGGTATTAATCTATAACCAGAGGCCTTTTCAt
ataaaatgtgtttttctgCATAATGATATTATGAACGAGTTATTTAATCT
ATGTAATACAAGCTCTTTACAAGTCTGTAAACTGATATAGTTGATGTCTC
TTTCATcaagagaaaaaagaatttttataatATGTTCAACAGAACAAGTC
GAGAGggagaaaaaataatataaagcCATGTCTGAGTCTGATATTCTCAT
TTGAAATGAAGTATTAAACAAATATATGCAGTTGTAGTCTTTCTCTATCA
GAAATTGACATTTCTCATATTACACCATAGCGTTTTATTATATTCcaaca
tgaaaaaaaaattggaaaattgattAAGTTTCATTAAAACCACACATCAC
TTGTTTAAGGTCGATTTCTATATATGTATTTTATGGCAAAATGCTGTCAA
TACAAGTGATATTTATAACAACCTGTCTACTGTAATTTTCAGGTTAAGTT
TACCAAACATTATAAAATTagaacatttgaaaatttgaaaactttaataa
aaaagttaataCTACAAAGGGTAACAAATGCTTTTTTTGCAATTTGAGCT
TCTATGAAATAATTCTATAAAAATGCTACCATGTTATAGTATACTTCAGA
AAAtccatttgaaaaatgggtGGTCATGAATCAATCAATGACACTGCCTT
CTTTTCAAGTTTCCAGTTTTCAATTTCTGACTTTGTCACATGATGATGAT
TTCGTATTTCTTTCATTGTCATTCCGTCATGatttcattatcaaaattct
CAATCATCCAAAGTTCAGATCTTTAAAGTCATTCAAAACCCTTTCAAATC
CGAAGAAATAATTTAGATTTGATTCAGATTGGTATTCTCAACTTAATATG
ATCAGTACAAATTcttccaaagaaattttgcaaaatctaCACTTTTCGTT
TTTCATGTCCTACAAACAAGAACCTGCTAATGTTTTTAATGATGTAATGA
CATAATCTTCAAAATTGGAAGGAAGGGTTTATTACCATATCACCTTGTCA
TTCTACCATGAACGGTATTTCATCAGTCAAATTGTTGTTTACTATCAAAA
TTGCTCCTTGGCAAGCTTCTCCTCAAACAATCTTTAGAATATCTAAATAT
TTACACTACAAGAATCGATGTTCATCAAACTTAGTTCTGCAAACTGTTGA
CTGATGTTTTGTTACCAAAGCTATTAATTAAAGATTACCCCATTCCACTA
GTTTCTTCAtctcttcctttttctttcattttagttCGAAAGAAGAATTA
CGCGGTGCTTCATCATCATTCAATAAGAACCTGATTACCTGTGCCTTCTG
TTCGTGCAGTGAACAGCTACCCTGGTTTAAAGGccaattcaaaagctatg
gacCCCTTTCTAAACTTGCTGGGTCACCTTCAGCCAATGAAATCTTTCGA
CCTTACCTAGAAACAGATACCGTATCATCGCGTTCGGGAGGTGGACATTC
TTCACCTGATCCTAAAGAATTCAACCCTTCGAGTGATGCGAATTCTCTCC
CAATGCATGTTGGGTATTTCTTTCGATCGAATATTCATTCCGTAGTAGAC
TATGAAGAAATGATATGGGCCCATAAATCTTGCATGGATTGGAGTATATG
TACATCGAAAGCTGAGTCAGATAATCCGCTTGTCTTGGTTGGAAAAGCAC
TGTCTCAGGTAATTAATTGAGTTATTGATCAGTTTATTTTTTTGCACCAG
AACTATGGAGAATTTTTGATTCGGGATGGGGCTTAAGGAAATGTTAAACT
TTGATTATAGTGCCTTAAGAGATTATAAGGGCgaatttcctcgtttttcg
ttAACAGGTTGAATTAACATATTTACTTTTTACTGCAGAGATATTTTCAG
GGAGGGGCGGGTGGATTTGAAATCATTGCTATCTGTCGTAATGGACTCTT
TCCCTGAAAAAAAGAGTTGATCTTACTCAGAAAAggcatttcttcttctt
ctaagGTCCAAAAGGTTGGAAGATTTTTGTTATTGTTACATTATCTTTGT
GTTTTCGAaacagatgaactactttcTTAACTTCTTTCGGCTTTTTCCTT
GTAAAAGGGTCACGCGATGCAAACGGAGACATTTTCCCTTCTTTTTGTCT
CTTTTATCTGTTTTTCAATTTCCCTTTGTACTTAATCCCGGGGGttcgtt
ttatttttttggtcgATTCCAAACCCCCTCAAAGACGCAAAATATCTTTT
TGGggattttcttttgaatgaaatttttgaaacattaaaaaatataactA
GGATGAAAATATGTTTCACAGGTTTGGGAACATTACGTAATATAAAAACC
ACCCATTACGTACACAATTTTCATAAGACCAAACTGTAGTAGAACATATA
ACAAAGGCATTTGAGATAAAAAACACAAGAGTTTTGAAATGAATAAGCAG
AGTctagttttcatttttcatcccataattttcatggaaattatGCTTTA
GGCTTTTTTCATAACTTAAAAACACTTGAAGGACTACATAGTTTTTTTAG
TTGGTCTTACAAAAATGATCCCATGAAAACATGACAATTTTTACTTGCCT
AAGAAACTCAAAGAATTGATTAGCCTGATCATTTTGGGATGAGACCCCTG
ATGACATTTCCCTGCAAATGTGATGACATTGAGACAAAGAAACCACTATC
CTAGCCAatcttttatcaatttttttaattcatttcaaCAAACTTTCTTA
ACTAACTAACACCAGAAACATAAACTCACCGAGTGAGCTGTCAGTCAAGT
GAAAACTTTCTGCTCTTTTTTAGTCATGTTCATTTTGTGGAAGATTTGGT
GCCAGTTTAGGCTGCTGCGTCCAAGACTGTAACAAATACTTTCATCTACC
ATGTGCCCTCTATTCAAGTACACTAGCAGTAAGTCAGCATCAAAAGATTg
attgtatttttgttttttgttttcggataatgaaaaagaacaatttatgt
tttgtgtattgaaagtgtCCATCCTTTTGTAAATTTATGACTTTCTTGCG
TTTTCaatcttttattaaaaagtttattccaaaaatttttaccCCCCCCA
TCTTTAGGCAATTACATTTTTCCGTCATGGCAAAAAACCTGGAAACCTGG
AAAAACTTGTATTTCGGAaaattgggacaagctggagtttttacaagctg
ttagtatttgatttggttggtcgttaagatgtaataaaagaatctcatta
cattttctaaagaacgcagcatctctatcactttaaatgaccaattagtg
aagtatcttgtaaaaactccagctcatcccgaaAAATTATAATCGCCCTC
CCCCCATTTTTAGGAGATCACATTTTTCCGTCAAGGCAGAAAACCTGGAA
AATCGAAATGTTCGTTAAAATTTCGGCAGTAATCCAGTTGAGTTACTTCT
TTAGTTCCcactgaaatttcaaatttggttttcttgtttttttttcagct
tcACAAGTCAATGGAAATTTATTGTGCAGATCATCTGAAGTTCGTTCCGG
AATCAGGtaatttttttacagaattCACAATTCACTTCTGTATTTACCCA
TTTTAAAAGTATGATCAAGCCAAGTGAGGCGATTGCCTTTTTAATCGTTT
CAAAAAAAAGCCAAGTGCCGCTCGTGACttcatttatgaaaaaaaatcat
cgcAACATCTCATTTCTTTTTCAGGGTCTAAAGTCAGTCCGAGTTTACTA
AGATTTTGATAAGTTTTTAATACGGGATTCGCAAATGTAATGAACTCTTT
ATTCTTTCAGTCGTGTGTCAGAAATGTGAGAATAATGAACATGTGGAGAA
TTTTGTCACCTGTTCCGTTTGCAATTCCAATTTCCACGCCAGTTGCAAAA
CTCCCAGTATCCATTTAACCGGTAGACGAAAATTGACATTTCAATGTGAA
TCGTGCAGGAGTTGTGCACTTTGCTCGTAAGTTGTTGCAGTATTAAAGAT
TGATaaacattgatttttcaagttcatGGATTTGTTCTAAagtgtttttg
gacctacctggaggtcctatagaTTAACcgttgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttagatttttctgatttttggcacaaaga
tgcaaaatagcaatgtccaaaatgtgacggaacccgatattcgaaaaaaa
acttttccagcCGCCGGAAAAGCtgttttttagcattttctcgagatttt
atcattagttttttctgtttttttgctcaaagatgcgtattaacaatgcc
caaaacatggccgagtccgatttttgagaagaatttttttccggccgaaa
atgccggaaatcgccgtttttctggattttcatgggactttttcattata
attggttgtttttttttcattcaaaaacattattaatagccatgcccacc
atcaagcatgtttcaattttcaataaaactatttaaaaatcgccggaaca
acctatatcttgaatttctcgaaCTGTACTTtacctaaaatgtgtcggag
cctgatttttgaagaaaaaaagttttggcaaaaaatgccggaaatatgcc
gtcAAAGCCGGTTTTTTGCCATTTTGTCGAGATTTCATTATTCCTTTTTC
CCGATTTTCGCACAAAGATGTGTACCAGTAATGTCCTAAGTGTGGCCgat
ttggatttttgagaatcatgtttttccggccgaaaatgtcagaagtatgc
cggaaatcgccgtttttgcaggtTTGAATTGagctt

Coding sequence (CDS) from alignment at sc0000002:1410311..1421246+

>TCONS_00000480 ID=TCONS_00000480|Name=TCONS_00000480|organism=Clytia hemisphaerica|type=CDS|length=2118bp|location=Sequence derived from alignment at sc0000002:1410311..1421246+ (Clytia hemisphaerica)
ATGGAAAAGACATATATGACTCCACTTGTCACTAAATGGAAAGATGCTTT
TGGTCCAACTTCGTCTACAATGAGTATTGTTGTTGAGCTGTTATGTTACA
CTACGTGTTACAGGCAAGGTGGTGATTCAGAGAAATTTGCTCGAAGAGCC
ATCGAAAGTCTGGTcaaaaaactgagaaaaaaggCTGATGAGCTTGAGAA
TTTAGTTATTGCTATTAAGTCAAAAGGAAGACAACCTTCAAAATGTGTTA
CAATACCGAGAACCTTAGATGGAAGGTTACAAGTTTGCGAAAGAAAAGGA
TTTCCCCATGTGATTTATTCCAGACTTTTTCGCTGGCCAGATATCCACAA
AATGGAACTACGGCATTTAGATACCTGTCAATTTGCCTTTGATTTGAAGT
ATGACGTTGTCTGTGTGAATCCATATCATTATGAAAGAATTTCGTCAACC
CCGTCACAGTCAAGTGTTATTGACCCAGCTGGGTTTCACCATCGTGGTCC
TAGAAGCCAACCACCAGATTTATCTTCATCTACGATAAAGGCTCAACCTT
TGAATAGACCACACATACTAACTTTTAATGGTGGTCAAACACAGACTCCC
ATTCTACCACTGGCTGTTACGTATCCTCCACGAATGCCATGTGCTGCAGA
CCCTTTTCCTGTTATTGTACAACACCTTCTCTATCATACAAATTGGTATA
AAGAGTATAAAGATGGTATTGATTCAAATGACAATGGTTTTACGCGAAGA
GCAATTGAGTCTCTtgttaagaaattaaaaaagcGATATAATGAACTAGA
TGCATTAATTGCAGCTATCGTGTCTCAAGGTAGAATTGAAACTAAATGTG
CTACTGTTCAAAGGACGTTAGATGGACGACTACAAGTAGGGGAAAGGAAA
GATTTCCCACATGTAACATATACTAGACTATGGCGCTGGCCTAATGTACA
CAAACTAGAATTGTGTAGTATAGACTCTTGTTTACATGGTTTTGACCGAA
AAGGTGGAAACATTTGTGTTAATCCTTATCATTATGACAGGGTAAAACCA
CCAGAATTACACACCTATCCTCCATCCATGGCACATGCTGAAAGCAAACG
TCTTGGTTCAACTTCTACTTCAACTACATCATCTCACaataattttcatc
attttttcgaACGCAAACATCCTGATGCAGATAGAATGAGTATAGATGAC
AAGTCTTCTTATTCTAGGCGGACAAAtAGTCCCAAACGGAAGTCCATTGA
GGAAGTTGAACATTACGAAAATGGATCAAATCGACCCCCTAAAGAAATGA
AGatCAGCAGTCCTGTACAGATACCTCACAAAGCAAGGAGTATATCAGAT
TACAGCTCAAGttCGAAAGAAGAATTACGCGGTGCTTCATCATCATTCAA
TAAGAACCTGATTACCTGTGCCTTCTGTTCGTGCAGTGAACAGCTACCCT
GGTTTAAAGGccaattcaaaagctatggacCCCTTTCTAAACTTGCTGGG
TCACCTTCAGCCAATGAAATCTTTCGACCTTACCTAGAAACAGATACCGT
ATCATCGCGTTCGGGAGGTGGACATTCTTCACCTGATCCTAAAGAATTCA
ACCCTTCGAGTGATGCGAATTCTCTCCCAATGCATGTTGGGTATTTCTTT
CGATCGAATATTCATTCCGTAGTAGACTATGAAGAAATGATATGGGCCCA
TAAATCTTGCATGGATTGGAGTATATGTACATCGAAAGCTGAGTCAGATA
ATCCGCTTGTCTTGGTTGGAAAAGCACTGTCTCAGTCATGTTCATTTTGT
GGAAGATTTGGTGCCAGTTTAGGCTGCTGCGTCCAAGACTGTAACAAATA
CTTTCATCTACCATGTGCCCTCTATTCAAGTACACTAGCActtcACAAGT
CAATGGAAATTTATTGTGCAGATCATCTGAAGTTCGTTCCGGAATCAGTC
GTGTGTCAGAAATGTGAGAATAATGAACATGTGGAGAATTTTGTCACCTG
TTCCGTTTGCAATTCCAATTTCCACGCCAGTTGCAAAACTCCCAGTATCC
ATTTAACCGGTAGACGAAAATTGACATTTCAATGTGAATCGTGCAGGAGT
TGTGCACTTTGCTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000303XLOC_000303Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000480-exon-sc0000002-1491911889:1410311..1410925TCONS_00000480-exon-sc0000002-1491911889:1410311..1410925Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1510915933:1410311..1410925TCONS_00000480-exon-sc0000002-1510915933:1410311..1410925Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1575043694:1410311..1410925TCONS_00000480-exon-sc0000002-1575043694:1410311..1410925Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1491911889:1412653..1413240TCONS_00000480-exon-sc0000002-1491911889:1412653..1413240Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1510915933:1412653..1413240TCONS_00000480-exon-sc0000002-1510915933:1412653..1413240Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1575043694:1412653..1413240TCONS_00000480-exon-sc0000002-1575043694:1412653..1413240Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1491911889:1413675..1413846TCONS_00000480-exon-sc0000002-1491911889:1413675..1413846Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1510915933:1413675..1413846TCONS_00000480-exon-sc0000002-1510915933:1413675..1413846Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1575043694:1413675..1413846TCONS_00000480-exon-sc0000002-1575043694:1413675..1413846Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1491911889:1414103..1414178TCONS_00000480-exon-sc0000002-1491911889:1414103..1414178Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1510915933:1414103..1414178TCONS_00000480-exon-sc0000002-1510915933:1414103..1414178Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1575043694:1414103..1414178TCONS_00000480-exon-sc0000002-1575043694:1414103..1414178Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1491911889:1414458..1414516TCONS_00000480-exon-sc0000002-1491911889:1414458..1414516Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1510915933:1414458..1414516TCONS_00000480-exon-sc0000002-1510915933:1414458..1414516Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1575043694:1414458..1414516TCONS_00000480-exon-sc0000002-1575043694:1414458..1414516Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1491911889:1417695..1418118TCONS_00000480-exon-sc0000002-1491911889:1417695..1418118Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1510915933:1417695..1418118TCONS_00000480-exon-sc0000002-1510915933:1417695..1418118Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1575043694:1417695..1418118TCONS_00000480-exon-sc0000002-1575043694:1417695..1418118Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1491911889:1419234..1419338TCONS_00000480-exon-sc0000002-1491911889:1419234..1419338Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1510915933:1419234..1419338TCONS_00000480-exon-sc0000002-1510915933:1419234..1419338Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1575043694:1419234..1419338TCONS_00000480-exon-sc0000002-1575043694:1419234..1419338Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1491911889:1419909..1419966TCONS_00000480-exon-sc0000002-1491911889:1419909..1419966Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1510915933:1419909..1419966TCONS_00000480-exon-sc0000002-1510915933:1419909..1419966Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1575043694:1419909..1419966TCONS_00000480-exon-sc0000002-1575043694:1419909..1419966Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1491911889:1420221..1421246TCONS_00000480-exon-sc0000002-1491911889:1420221..1421246Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1510915933:1420221..1421246TCONS_00000480-exon-sc0000002-1510915933:1420221..1421246Clytia hemisphaericaexon
TCONS_00000480-exon-sc0000002-1575043694:1420221..1421246TCONS_00000480-exon-sc0000002-1575043694:1420221..1421246Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000480-proteinTCONS_00000480-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1410311..1421246 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.36015	3.4833	3.14383	3.31907	10.9768	7.53051	7.76752	9.95155	3.84861	9.29508	5.91387	4.38343	6.20388	5.72778	3.37963	4.91963	10.6295	9.92191	3.05885	2.93345	7.77103	8.13485	1.32924	1.97513	4.78757	5.51112	7.23903	5.08564	2.6864	2.30583
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR003619MAD_homology1_Dwarfin-type
IPR013019MAD_homology_MH1
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005667transcription factor complex
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0007179transforming growth factor beta receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0007179 transforming growth factor beta receptor signaling pathway
cellular_component GO:0005622 intracellular
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00000480 vs. Swiss-Prot (Human)
Match: SMAD4 (Mothers against decapentaplegic homolog 4 OS=Homo sapiens GN=SMAD4 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.258e-43
Identity = 89/133 (66.92%), Postives = 108/133 (81.20%), Query Frame = 3 
Query:  204 PTS--STMSIVVELLCYTTCYRQGGDSEKFARRAIESLVKKLRKKADELENLVIAIKSKGRQPSKCVTIPRTLDGRLQVCERKGFPHVIYSRLFRWPDIHKMELRHLDTCQFAFDLKYDVVCVNPYHYERISS 596
            PTS  + +SIV  L+C+    RQGG+SE FA+RAIESLVKKL++K DEL++L+ AI + G  PSKCVTI RTLDGRLQV  RKGFPHVIY+RL+RWPD+HK EL+H+  CQ+AFDLK D VCVNPYHYER+ S
Sbjct:   10 PTSNDACLSIVHSLMCH----RQGGESETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHKNELKHVKYCQYAFDLKCDSVCVNPYHYERVVS 138

HSP 2 Score: 124.405 bits (311), Expect = 1.740e-29
Identity = 64/107 (59.81%), Postives = 80/107 (74.77%), Query Frame = 3 
Query:  888 FTRRAIESLVKKLKKRYNELDALIAAIVSQGRIETKCATVQRTLDGRLQVGERKDFPHVTYTRLWRWPNVHKLELCSIDSCLHGFDRKGGNICVNPYHYDRVKPPEL 1208
            F +RAIESLVKKLK++ +ELD+LI AI + G   +KC T+QRTLDGRLQV  RK FPHV Y RLWRWP++HK EL  +  C + FD K  ++CVNPYHY+RV  P +
Sbjct:   35 FAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHKNELKHVKYCQYAFDLKCDSVCVNPYHYERVVSPGI 141
The following BLAST results are available for this feature:
BLAST of TCONS_00000480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMAD41.258e-4366.92Mothers against decapentaplegic homolog 4 OS=Homo ... [more]
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