TCONS_00000594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000594
Unique NameTCONS_00000594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000594 ID=TCONS_00000594|Name=TCONS_00000594|organism=Clytia hemisphaerica|type=transcript|length=1478bp
TGGAGGTCTTCATCCATTTATCTCATTGATCTGGGAGGTTGACTTAATTC
ATGATTCCATTAATTCTTAATCTCACTTGAAATTGTATACTAAGTTATCG
AATAtagtttaaagcaattttacTACAAGAAAATAATATGACCTGTTCTA
TCTGAAGGCTATTCCTAATCAATCTTTGACTAATTTAcggatatttttat
caaaaaaatgaaactacAGAAGATACACATCATTATTTCTTTGTATACCT
TGACCACGAACCTTGAAATGTGTTATGGAACGACCATCAACAGTAAGGTG
TTACGAAACCACACCATCATTGGAAAACATGGTAAAGAAATGAGAGTTAC
GTACATCAGTATGAAGAGaattcaaaataaacttttattaGTTGTACCCA
TTGGAGGTGGATACGTTTCTAACAGTGACGAATGTCAAAAAAAATGCGCT
CTAACCATCAATTGTATTGCTATGAATCTTCAACCCACCGCACCAGTCAG
TAACTATTCACTATGTCATTTATTGGATAAAGATCATTACAAAAGACCAC
ACCTTTTGGTAGATGCTGAAGACTCTGAATATCACGTCGTTTCGAGCGGA
TGTTTGAACAAAACAAATCCCATGTCGCCAAAATGCCAACCATCAGAAGC
AGGTGTTGAGAAGACAACATATTGCCATCACAACTACTCTGGAGACGAAA
ATTACGAATGTCGTtgtagaaaaaataatttatgctTTCTGAATGAATTG
AAGCCCGTTGTTAACGTACATTATGACAGACTACCATTTGCAAGGAACCA
TTGGTTTATCAAATTCAACCTCACTTTGCCATCTAATATAACAGAAGACG
GACAATTTTTCCGTTTCAATAGTTATAGTGAAGGCGAAAACCTTGGATTC
ACGTTGTTTTATTTATACTTGTCAAATAAAATATATGCTAATTTTCGGGA
ACCATCTTGGATAAGAACACCTCTTGTGGTTGATCAACCACAACCAAACC
AAGTAATGGATATTGAGGcaaaatcattttataattCTCAAACAAATAGA
TGGCAGCGAAAGATATATCTTGATGGCGTCCTAAAAGCTGAAGAAACAAC
AAGCACTACTGGAGCATTTACCATGAACGATGTTACATTCATTTTAGGGA
GCACCCCAGCTACAATCACTGATTTCAAATACTCCTTGACTGAACCAAGT
GAAATACCGATAGTATACCCTGGAACAAGATCGTTGATAAAATTACCAGC
TCTATCTCGCAATTGGATGTTTCATTTTGAATTCAAGCTCACCTCAGATA
CATTATTGTCGCCTGCATCATCAAGCATACTCATTGTAGATGCTAATGAA
GGAAGCCTGTTTTATGTAATCGTGAAAGACCCATTGACCCTTGATTTTAG
TGGTGTTGGATCCTTTCAACCGCAAAAGAATGTGTATCATAAAGTTGTTA
TCACGCAATTTTTCTCACCGTTTCAGAA
Run BLAST on NCBI

protein sequence of TCONS_00000594-protein

>TCONS_00000594-protein ID=TCONS_00000594-protein|Name=TCONS_00000594-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MKLQKIHIIISLYTLTTNLEMCYGTTINSKVLRNHTIIGKHGKEMRVTYI
SMKRIQNKLLLVVPIGGGYVSNSDECQKKCALTINCIAMNLQPTAPVSNY
SLCHLLDKDHYKRPHLLVDAEDSEYHVVSSGCLNKTNPMSPKCQPSEAGV
EKTTYCHHNYSGDENYECRCRKNNLCFLNELKPVVNVHYDRLPFARNHWF
IKFNLTLPSNITEDGQFFRFNSYSEGENLGFTLFYLYLSNKIYANFREPS
WIRTPLVVDQPQPNQVMDIEAKSFYNSQTNRWQRKIYLDGVLKAEETTST
TGAFTMNDVTFILGSTPATITDFKYSLTEPSEIPIVYPGTRSLIKLPALS
RNWMFHFEFKLTSDTLLSPASSSILIVDANEGSLFYVIVKDPLTLDFSGV
GSFQPQKNVYHKVVITQFFSPFQ
Run BLAST on NCBI

transcript from alignment at sc0000002:1259714..1263162-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000594 ID=TCONS_00000594|Name=TCONS_00000594|organism=Clytia hemisphaerica|type=transcript|length=3449bp|location=Sequence derived from alignment at sc0000002:1259714..1263162- (Clytia hemisphaerica)
TGGAGGTCTTCATCCATTTATCTCATTGATCTGGGAGGTTGACTTAATTC
ATGATTCCATTAATTCTTAATCTCACTTGAAATTGTATACTAAGTTATCG
AATATAGTTTAAAGCAATTTTACTACAAGAAAATAATATGACCTGTTCTA
TCTGAAGGCTATTCCTAATCAATCTTTGACTAATTTACGGATATTTTTAT
CAAAAAAATGAAACTACAGAAGATACACATCATTATTTCTTTGTATACCT
TGACCACGAACCTTGAAATGTGTTATGGAACGACCATCAACAGTAAGGTG
TTACGAAACCACACCATCATTGGAAAACATGGTAAAGAAATGAGAGTTAC
GTACATCAGTATGAAGAGAATTCAAAATAAACTTTTATTAGTTGTACCCA
TTGGAGGTGGATACGTTTCTAACAGTGACGAATGTCAAAAAAAATGCGCT
CTAACCATCAATTGTATTGCTATGAATCTTCAACCCACCGCACCAGTCAG
TAACTATTCACTATGTCATTTATTGGATAAAGATCATTACAAAAGACCAC
ACCTTTTGGTAGATGCTGAAGACTCTGAATATCACGTCGTTTCGGTAAGT
TAAAATTACATACGTTGTTTTATAAGAACAAACTACAAAAGAACAAAAGG
CTTCGATGGCCAAAATATTAAGAACAAGTTAAGAACATTTTAAATTTTAT
GGATTCTTAGAACACCCTATTTCCAAGGAAACGGCATAAAAATATTCACA
AAATGGCAAGAAGGAAACGGCATAAAACTGCTCACAAGAGCATTCTTAGT
CTCAAAACTCAAAAAGGTTAAGAACATACGAAGGTATACACGCTTTTTTT
TGTAAGAAACAATAAATCACTGCTGAGGTTGGTTGGCTGCTGCTGGTAAC
AAAATGGCAAATTAATTAAGAGCACTGTAAGAATATTTTTAGTCTCAAAA
CTCAAAAAGGTTATGAACATCCGAAGGTATACACGCTTTTTTTTTTTAAG
AAACAATAAATCACTCCTGAGGCTCGTTTGTTTTTTACTTTGAGCATCAA
ACACTTTTCATCCCGTCCTTTTCGCTTTGATTTGCTTAAAATTCTACTTT
TCCATGCAAAGCTTTTTGTTGCTAAATTGTTCAAGTTTTTTTAGCCTTAT
TAATGCGCTATTAAATTGTCAAAAGAGCAAAACAGTGTAGATAGTTTAAT
AATTCAATGACTTTCTAAAATGGCTGATTTGAACCAAACACAAGATATTT
AGTCATATCATNATAGTTTAATAATTCAATGAATTTCTAAAATGGCTGAT
TTGAACCAAACAAGATATTTAATCATATCATTGACTTTCAGAGCGGATGT
TTGAACAAAACAAATCCCATGTCGCCAAAATGCCAACCATCAGAAGCAGG
TGTTGAGAAGACAACATATTGCCATCACAACTACTCTGGAGACGAAAATT
ACGAATGTCGTTGTAGAAAAAATAATTTATGCTTTCTGAATGGTGAGATT
TCTTAGATCTTTGGTTTAAGTTTCTGAAAATTTCTGATTGGGTGGAACTC
AGCTTCTATTGTCGTACTTACTCAAGAGGAAAGAAAGGAGACAAAAAGTT
TAAACCTTGTCTACCAGTATCTTTTTATAAATCATTATTTCATTAAGAGT
AATCAGTTGGTACTGGCAAAAGTGATGTCTCGCACTTAACAAATTCAATA
TAACCAATACCTGTCAATAAGCATGCCAAATTCCAGCCAAGTCCGACCAC
TATTGAAGTCTGCAGGCTGCCCCAAAGATTTAACCTCGTTTTTGCAAAAA
AAATCAAAATTTTGGAAAAATGAAAAACACCCCCAGATGTTCACCCAAGG
AACAAATATGCCAAATTTCAGCCAAATCTGACCATGTTTGAAGTTTTCTG
CCTACCCTAAAGTTTTTGCGACACACACGCAGATAAAACACACACATTGT
CAGATTCNCCTAAAGTTTTTGCGACACACACGCAGATAAAACACACACAT
TGTCAGATTCTAGCTCAAGTGAAGTTGAGAATGACTTATTAAATTCAGGG
TCATGTTCGTTTCGAAAGGAATTGACAATTATCTTTTAATCTTCTTGACA
TTCCAGAATTGAAGCCCGTTGTTAACGTACATTATGACAGACTACCATTT
GCAAGGAACCATTGGTTTATCAAATTCAACCTCACTTTGCCATCTAATAT
AACAGAAGACGGACAATTTTTCCGTTTCAATAGTTATAGTGAAGGCGAAA
ACCTTGGATTCACGTTGTTTTATTTATACTTGTCAAATAAAATATATGCT
AATTTTCGGGAACCATCTTGGATAAGAACACCTCTTGTGGTTGATCAACC
ACAACCAAACCAAGTAATGGATATTGAGGCAAAATCATTTTATAATTCTC
AAACAAATAGATGGCAGCGAAAGATATATCTTGATGGCGTCCTAAAAGCT
GAAGAAACAACAAGCACTACTGGAGCATTTACCATGAACGATGTTACATT
CATTTTAGGGAGCACCCCAGCTACAATCACTGATTTCAAATACTCCTTGA
CTGAACCAAGTGGTAAGCTCTACTTTCTACTTTAAGGGAGCTAATTTTTT
AGGTAACTAATTTTTGCGCGAAATAAGTTTCGCGGGAACTAATTTTCCTA
ATTCCTCTCTCTGGGTCTCCTCCTTTCTAGGCGAAATTTGTACCAGGTAT
GTGCAGGTAGGTAAACCTCAAAAGATTTTACCTTAAAGTGTCGATTTTTG
ATTTTTTTTTGCTTGGACATACCTATCACCTGGCAAACATAGTTCCCTAA
GACTCCTCCACAAGTAAGGAGTGTAACTGGTCATGTTTTTATTACAAAAT
GTTTCAAAGTGATAGAAAAATTGTTATGAATAGTGGTGTGATGATAAAGA
TTGATTTTCAAATTGATCATGGGTAACTTTCTTGCCAAACATAATCTTTT
TTTATTAATGTAGAAAATTATCCAATATCAAGATGTTAATTAATCTCCAT
CTACATCAATATTTGTGGCAGAACACGTATAATCTTTAAAAGGAAAGTAG
AAAAGCAAAATAGGGCCATAAATATACAGCAACGAGAGCAATTTTTCCCG
ACAATGTGATTTTAGTTTCTGTTCCTGTTGGTCAAACTTAAGCATTAACC
AGAAATACTAAATTATCTTTAGAAATACCGATAGTATACCCTGGAACAAG
ATCGTTGATAAAATTACCAGCTCTATCTCGCAATTGGATGTTTCATTTTG
AATTCAAGCTCACCTCAGATACATTATTGTCGCCTGCATCATCAAGCATA
CTCATTGTAGATGCTAATGAAGGAAGCCTGTTTTATGTAATCGTGAAAGA
CCCATTGACCCTTGATTTTAGTGGTGTTGGATCCTTTCAACCGCAAAAGA
ATGTGTATCATAAAGTTGTTATCACGCAATTTTTCTCACCGTTTCAGAA

Coding sequence (CDS) from alignment at sc0000002:1259714..1263162-

>TCONS_00000594 ID=TCONS_00000594|Name=TCONS_00000594|organism=Clytia hemisphaerica|type=CDS|length=1269bp|location=Sequence derived from alignment at sc0000002:1259714..1263162- (Clytia hemisphaerica)
ATGAAACTACAGAAGATACACATCATTATTTCTTTGTATACCTTGACCAC
GAACCTTGAAATGTGTTATGGAACGACCATCAACAGTAAGGTGTTACGAA
ACCACACCATCATTGGAAAACATGGTAAAGAAATGAGAGTTACGTACATC
AGTATGAAGAGAATTCAAAATAAACTTTTATTAGTTGTACCCATTGGAGG
TGGATACGTTTCTAACAGTGACGAATGTCAAAAAAAATGCGCTCTAACCA
TCAATTGTATTGCTATGAATCTTCAACCCACCGCACCAGTCAGTAACTAT
TCACTATGTCATTTATTGGATAAAGATCATTACAAAAGACCACACCTTTT
GGTAGATGCTGAAGACTCTGAATATCACGTCGTTTCGAGCGGATGTTTGA
ACAAAACAAATCCCATGTCGCCAAAATGCCAACCATCAGAAGCAGGTGTT
GAGAAGACAACATATTGCCATCACAACTACTCTGGAGACGAAAATTACGA
ATGTCGTTGTAGAAAAAATAATTTATGCTTTCTGAATGAATTGAAGCCCG
TTGTTAACGTACATTATGACAGACTACCATTTGCAAGGAACCATTGGTTT
ATCAAATTCAACCTCACTTTGCCATCTAATATAACAGAAGACGGACAATT
TTTCCGTTTCAATAGTTATAGTGAAGGCGAAAACCTTGGATTCACGTTGT
TTTATTTATACTTGTCAAATAAAATATATGCTAATTTTCGGGAACCATCT
TGGATAAGAACACCTCTTGTGGTTGATCAACCACAACCAAACCAAGTAAT
GGATATTGAGGCAAAATCATTTTATAATTCTCAAACAAATAGATGGCAGC
GAAAGATATATCTTGATGGCGTCCTAAAAGCTGAAGAAACAACAAGCACT
ACTGGAGCATTTACCATGAACGATGTTACATTCATTTTAGGGAGCACCCC
AGCTACAATCACTGATTTCAAATACTCCTTGACTGAACCAAGTGAAATAC
CGATAGTATACCCTGGAACAAGATCGTTGATAAAATTACCAGCTCTATCT
CGCAATTGGATGTTTCATTTTGAATTCAAGCTCACCTCAGATACATTATT
GTCGCCTGCATCATCAAGCATACTCATTGTAGATGCTAATGAAGGAAGCC
TGTTTTATGTAATCGTGAAAGACCCATTGACCCTTGATTTTAGTGGTGTT
GGATCCTTTCAACCGCAAAAGAATGTGTATCATAAAGTTGTTATCACGCA
ATTTTTCTCACCGTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000349XLOC_000349Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000594-exon-sc0000002-1575043694:1262569..1263162TCONS_00000594-exon-sc0000002-1575043694:1262569..1263162Clytia hemisphaericaexon
TCONS_00000594-exon-sc0000002-1575043694:1261671..1261821TCONS_00000594-exon-sc0000002-1575043694:1261671..1261821Clytia hemisphaericaexon
TCONS_00000594-exon-sc0000002-1575043694:1260601..1261056TCONS_00000594-exon-sc0000002-1575043694:1260601..1261056Clytia hemisphaericaexon
TCONS_00000594-exon-sc0000002-1575043694:1259714..1259990TCONS_00000594-exon-sc0000002-1575043694:1259714..1259990Clytia hemisphaericaexon
TCONS_00000594-exon-sc0000002-1510915933:1262569..1263162TCONS_00000594-exon-sc0000002-1510915933:1262569..1263162Clytia hemisphaericaexon
TCONS_00000594-exon-sc0000002-1510915933:1261671..1261821TCONS_00000594-exon-sc0000002-1510915933:1261671..1261821Clytia hemisphaericaexon
TCONS_00000594-exon-sc0000002-1510915933:1260601..1261056TCONS_00000594-exon-sc0000002-1510915933:1260601..1261056Clytia hemisphaericaexon
TCONS_00000594-exon-sc0000002-1510915933:1259714..1259990TCONS_00000594-exon-sc0000002-1510915933:1259714..1259990Clytia hemisphaericaexon
TCONS_00000594-exon-sc0000002-1491911889:1262569..1263162TCONS_00000594-exon-sc0000002-1491911889:1262569..1263162Clytia hemisphaericaexon
TCONS_00000594-exon-sc0000002-1491911889:1261671..1261821TCONS_00000594-exon-sc0000002-1491911889:1261671..1261821Clytia hemisphaericaexon
TCONS_00000594-exon-sc0000002-1491911889:1260601..1261056TCONS_00000594-exon-sc0000002-1491911889:1260601..1261056Clytia hemisphaericaexon
TCONS_00000594-exon-sc0000002-1491911889:1259714..1259990TCONS_00000594-exon-sc0000002-1491911889:1259714..1259990Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000594-proteinTCONS_00000594-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1259714..1263162 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.261774	0.281274	0.263203	0.0309691	1.39533	0.879499	1.68008	1.12567	0.620398	0.986443	0.46343	0.872605	6.04544	3.51032	1.31331	1.35159	0.238218	0.445061	5.8634	5.90399	0.948585	1.01838	0.972201	1.29156	1.35167	2.76999	13.3389	7.31801	0.487501	0.325842
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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