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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000598 ID=TCONS_00000598|Name=TCONS_00000598|organism=Clytia hemisphaerica|type=transcript|length=2120bpRun BLAST on NCBI protein sequence of TCONS_00000598-protein >TCONS_00000598-protein ID=TCONS_00000598-protein|Name=TCONS_00000598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=639bp MAATDSVTLAWINYCCREGYHRQLQTVCLDSLKKYGNDPVLVFWKAFGMLRun BLAST on NCBI transcript from alignment at sc0000002:1364346..1372010- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000598 ID=TCONS_00000598|Name=TCONS_00000598|organism=Clytia hemisphaerica|type=transcript|length=7665bp|location=Sequence derived from alignment at sc0000002:1364346..1372010- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:1364346..1372010- >TCONS_00000598 ID=TCONS_00000598|Name=TCONS_00000598|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at sc0000002:1364346..1372010- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000598 vs. Swiss-Prot (Human)
Match: TT21B (Tetratricopeptide repeat protein 21B OS=Homo sapiens GN=TTC21B PE=1 SV=2) HSP 1 Score: 575.474 bits (1482), Expect = 0.000e+0 Identity = 276/622 (44.37%), Postives = 424/622 (68.17%), Query Frame = 1
Query: 166 INYCCREGYHRQLQTVCLDSLKKYGNDPVLVFWKAFGMLQEDNLSEAIQEFERIKDQRDVVLCSLMALIVAHKRSKSSDKQTVQQLEAKLKSERTQCGETALYFGGMFLFHSGRPDKAREYVDRMLKMSPDSSEGLILRGWADLKSSKENYVKKSIKYFDEALNSNHSVKDIDALLGKMEYMKRKQNFTGALDLTNQLVVMHPDFFPALVEKMRICLSLQDWEQTMETANRIFQVDTQNIEALHFLVLTYLCKDTDYNQAVEKISDVIQALDRHEPKNPHLYARLSKCYARLCGRNQNVLQQALTLLERAKSVSPKNADLYNEAGYQLMLQNKMRESLKSFKQAMKIDESSVKALMGIIHCQILQNQLDDAEQQLDFFNEIQASTGKTADVLYLMALFGMKKGKKADEIMTLCQQTVESHFAKMAGLPLGTQYFELLNPDFXXXXXXXXXXYAPTEPTGLVMSTNGALKKCGLILEPVIKTIPGFVKAQYVYAKVKFISGDIDTAKTYIQKCLEVDLNFVNAHILMAQIHLHNNNYSACEASLENGLSYNFEVKDSPIYHIICAKIQKKQNNLNESKETLMVAMNLPGVKR-PVSANEKPPKFSATLGDRVVVYLELADIQR 2028
INY C+E Y + V + +K+YG+DPV F+ A+G L E EA++EFE IK+++DV LCSL+ALI AHK S + D++ + + +A++K +R GE ALY G+FL+H GR DKAREY+DRM+K+S S +G +L+ W D+ KE Y KK++KYF+E L + D ALLGK + ++ +QN++GAL+ NQ++V P F PA V+KM++ L+LQDW+QT+ETA R+ D+QN+EAL L Y+C++ D +A K+ ++ LD EP+N L+ ++ ++R CGR+Q +LQ+ TLLERA S++P+ ++ E GYQ++LQ +++E+LK +K AM +DE+SV AL+G I CQ+++ QL DA+QQL+F NEIQ S GK+A+++YL A+ MKK K+ +E++ L +++HF+++ GLPLG QYFE LNPDFLL++V L + P +P L++C +LE V++T+PG ++ ++ AKVK++SGDI+ A +Q CLE + ++ +AH+L+AQ++L C SLE LSY+F+V+D P+YH+I A+ QKK + ++ +TL +AM+LPG+KR S K K R+ ++LEL D+ R
Sbjct: 10 INYYCQERYFHHVLLVASEGIKRYGSDPVFRFYHAYGTLMEGKTQEALREFEAIKNKQDVSLCSLLALIYAHKMSPNPDREAILESDARVKEQRKGAGEKALYHAGLFLWHIGRHDKAREYIDRMIKISDGSKQGHVLKAWLDITRGKEPYTKKALKYFEEGLQDGN---DTFALLGKAQCLEMRQNYSGALETVNQIIVNFPSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQNVEALRMQALYYVCREGDIEKASTKLENLGNTLDAMEPQNAQLFYNITLAFSRTCGRSQLILQKIQTLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLEFLNEIQQSIGKSAELIYLHAVLAMKKNKRQEEVINLLNDVLDTHFSQLEGLPLGIQYFEKLNPDFLLEIVMEYLSFCPMQPASPGQPLCPLLRRCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDFKVRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSLPGMKRIGASTKSKDRKTEVDTSHRLSIFLELIDVHR 628 The following BLAST results are available for this feature:
BLAST of TCONS_00000598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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