TCONS_00000697 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000697
Unique Name	TCONS_00000697
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3776

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000005:447901..462969+
coding sequence from alignment at sc0000005:447901..462969+

transcript sequence

>TCONS_00000697 ID=TCONS_00000697|Name=TCONS_00000697|organism=Clytia hemisphaerica|type=transcript|length=3776bp
CGACGCGGGAAATGTAATCTGACAtctgattttttaaatatatactTTGT
ACATGTTTGGCCtaattttacaatatttttagaatattatactcaaaaaa
tggctgaTCAAGTTGACGAAAAAACAATCCAAAATACTGATGAAGTATCT
AAGGAAGAAACCAAAGAAGAGGAGGTGACAACGAAAAAGGAAGATGAGAA
GACAAATGAACAAGAATCGGAAGGAGAATCTACTGATGATGAAGATGACA
AACCAAAACCGCCACCAGTTAAAATCAATAAAGCTATGGCTGTCAATGAA
GAATACAATGAAAAGATGGAACATGATAGAGCATCAAGATTCAGTTTTCT
ATTAAAACAAACTGAAATATTTTCCCATTTCTTAAATGGAGCTGGTAAAA
AGCCACCAAAAAgtcctttaaaaatgaaaaagcagCCTGATCTTCCTTCC
AGTCCACCACCAAAGAAGGGGGCTAAAGACCATCGTCATCGACGTaccga
gaaagaagaagatgaagagcTTTTGGAAGATTCCAAGAGTTCTCAAGCAC
ATGTTGTTCAATTCACCGCTTCACCTTCATATATTAAATTTGGAACAATG
AGGGACTACCAGATTAGAGGATTGAATTGGATGATTTCGCTTTATGAAAA
TGGTATCAATGGAATTCTAGCTGATGAAATGggTCTTGGTAAAACTTTGC
AAACTATTTCATTGATTGGTTACATGAAACATCACAGAAACAACTCTGGT
CCACACATTGTAATTGTTCCCAAATCCACTCTTGCTAATTGGATGGCTGA
GTTTGCAAGATGGTGTCCAACTATAAGGACAGTTTGTTTAATTGGTAACC
AAGATCAGAGGTCAGCAATAATCAGAGATACATTGCTACCGGGAGAATGG
GATGTTCTTGTTACATCATACGAAATGTGTATTCGTGAAAAAACTGTACT
CAAGAAATTCGCTTGGAGATTCTTGTGTATTGATGAAGCTCAcagaatca
aaaatgaaaaatcactgCTTTCAAGCATTGTTCGTGAATTCAAATCATCA
AACAGACTTCTGCTCACTGGTACCCCACTACAAAATAACCTCCATGAATT
ATGGGCTTTGTTAAATTTCTTACTCCCTGATGTGTTCAATTCGTCTGATG
ACTTCGATGCTTGGTTTAATGCTGAGAATTTGTCCGAAGAAGATGCCATT
GTCAAACGGTTGCACGCTGTTTTACGTCCTTTCTTACTACGTCGTTTGAA
AAGTGAAGTCGAGAAATCTCTCCTTCCAAAGAAGATCACCAACGTTTACA
TAGGATTGAGTGCAATGCAAAGACAATGGTACACCAAGTTACTGATGAAG
GATATTGATATTGTCAACGGTGCTGGTAAAACTGACCGGATGAGATTGTT
GAATATCCTTATGCAGCTTCGAAAATGTTGTAATCACCCTTATCTTTTCG
ATGGAGCTGAACCTGGACCACCATATACAACAGACGTTCATTTGGTTGAT
AATTGCGGTAAAATGAGTGTCTTGGATAAACTGTTGGTGAGAATGAAGGA
GCGAGGATCACGTGTTTTGGTGTTTAGTCAGATGACTCGTATGCTTGATA
TCCTGGAAGATTACTCTATGTGGAGAGGTTTCCAATACTGTCGATTGGAC
GGTCAAACACCACATGAAGAACGTACCGCTCAAATTAACGATTTCAACTC
ACCTGGAAGTgacaaatttgtgttttttctgAGTACACGTGCTGGAGGTC
TGGGTATCAATCTTGCAACAGCTGATGTGGTCGTCATGTTTGATAATGAT
TGGAATCCACAAGTCGATCTCCAAGCACAGGATCGAGCACATCGTATCGG
TCAAACCAAACAAGTACAAGTATTCCGTTTCATCACCGAAAACACCATCG
AAGAAAGAATTATTGAACGTGCTGAAATGAAATTACGTCTTGATCGTGTT
GTCATTCAACAAGGTCGATTGGTGGAAGGACAAACGAAACTACAGAAGGA
TGAAGTACTGAACATGATTCGACATGGTGCTGATAAAGTCTTCGCTTCCA
AAGATTCAACTGTCACTGGTGAAGATATTGATCTTATCTTGGAAAGAGGT
GCTAAGAAGACTGAGGAGATtgccaaaaaaatgtcagattTGGGCGAAGG
CCAACTCAAGAATTTCACCATGGATGCACCTGACAGTATTTACAAATTCG
AAGGTCAAGATTTCCGTGAGACGCACGATAAACCCGGCGTATCTCACTGG
ATCGAACCACCAAAGCGTGAACGTAAAGCCAACTACGCTGTTGACACCTA
CTTCAAAGAACTAATGAGAGTAAACGAGCCCAAAGCACCCAAAGCTCCTC
GACCACCCAAACAACCTAACGTCCAAGATTTCCAATTCTTTCCACCAAGA
TTATTCGAACTTTTGGATATCGAGATTTACAGCTACCGAAAGGGGATTGG
ATACAAGGTACCACGTGATTATGACATGGATGACGCCGAATCGAAGAAAT
TCCAAAAAGAAGAACAATCAAAGATCGATAATGCTGAACCACTGAGCGAA
GAAGAACAAACGGAAAAAGAACAATTGTTAGCTCAAGGTTTCACCAATTG
GAATAAACGCGATTTCAATCAATTCATCAAGGCTTGCGAGAAATACGGTC
GTGATGATTtgaattctatttgtaaagaagTGGAAGGGAAATCACAAGCG
GAGGTCCGAGAATATGCTGGTGTGTTTTGGGAACGTTGCAATGAGCTGAC
TGACATTGACAAAATCATGGCACAGATCGAACGTGGCGAAGCCAAAATTC
AACGAAGAATTTCTATTAAAAGAGCCATGGAGGCTAAGATGGCAAGGTAC
AAGTCACCGTTTCACCAGCTCCGCATACAATACGGAACTAACAAAGGAAA
GAATTATACCGAAGAAGAGGACAGGTTTATCGTATGCATGTTACACAAAT
TGGGATTCGATCGGGAGAATGTATACGAAGAATTACGTCAATCTGTCCGA
AGTGCTCCTCAATTTCGATTTGATTGGTTTATCAAATCTCGAACTGCAGT
GGAATTGCAAAGACGCTGCAACACTTTGATCACTCTCATTGAAAGAGAAA
ACCAAGAGCTTGAAGAGCGAGAGAAACGTGAAAAACGCAAAGGAGCCAAA
CCAAATGCTGCTAGAACCCCTGCTCAAGGAAAGAGGAAAAATGAAGTTGT
GGCTGCTAAACCCGCCAAGAAAGCCAAAAACTAATCGGAAGTTGTACGAG
GAGTCTATAATGCCATCCATTTCCATCTTTTATTGAGAACACCGTCACAT
GGATGAAGTTTATTTGTTCAGAGAGACACTTACATCAGGTTTTCATGCGG
TGATGAGTCAACTAGCACAAAATCTTTCGCTGTATTTATTTCCTTTTTAC
GTTACTAGTGTattatttttacaaaagaataaTCGCTACATGTTTTTAAA
TAGTTAACCTTTTGTTTTTTCAGATTCTCTATCAAacaattgtttcaatt
tttttattatgtaccttaagtggataaattttggcggggattaaatttgg
cgaatttggcgaattgtgccaaaattcggcaattcgccaaattaaatccc
cgccaaatttaacaaaaagagaattatttgaaaaatcacaactttttagt
atatttttgagtaattttcacccatttcagtgtgacaaaatttccaattc
gccaaataaaatccccgccaaattttacgaaattgatctatcgccaaatt
aaatccacgccaaaatttatccactt

Run BLAST on NCBI

protein sequence of TCONS_00000697-protein

>TCONS_00000697-protein ID=TCONS_00000697-protein|Name=TCONS_00000697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1077bp
RRGKCNLTSDFLNIYFVHVWPNFTIFLEYYTQKMADQVDEKTIQNTDEVS
KEETKEEEVTTKKEDEKTNEQESEGESTDDEDDKPKPPPVKINKAMAVNE
EYNEKMEHDRASRFSFLLKQTEIFSHFLNGAGKKPPKSPLKMKKQPDLPS
SPPPKKGAKDHRHRRTEKEEDEELLEDSKSSQAHVVQFTASPSYIKFGTM
RDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLIGYMKHHRNNSG
PHIVIVPKSTLANWMAEFARWCPTIRTVCLIGNQDQRSAIIRDTLLPGEW
DVLVTSYEMCIREKTVLKKFAWRFLCIDEAHRIKNEKSLLSSIVREFKSS
NRLLLTGTPLQNNLHELWALLNFLLPDVFNSSDDFDAWFNAENLSEEDAI
VKRLHAVLRPFLLRRLKSEVEKSLLPKKITNVYIGLSAMQRQWYTKLLMK
DIDIVNGAGKTDRMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDVHLVD
NCGKMSVLDKLLVRMKERGSRVLVFSQMTRMLDILEDYSMWRGFQYCRLD
GQTPHEERTAQINDFNSPGSDKFVFFLSTRAGGLGINLATADVVVMFDND
WNPQVDLQAQDRAHRIGQTKQVQVFRFITENTIEERIIERAEMKLRLDRV
VIQQGRLVEGQTKLQKDEVLNMIRHGADKVFASKDSTVTGEDIDLILERG
AKKTEEIAKKMSDLGEGQLKNFTMDAPDSIYKFEGQDFRETHDKPGVSHW
IEPPKRERKANYAVDTYFKELMRVNEPKAPKAPRPPKQPNVQDFQFFPPR
LFELLDIEIYSYRKGIGYKVPRDYDMDDAESKKFQKEEQSKIDNAEPLSE
EEQTEKEQLLAQGFTNWNKRDFNQFIKACEKYGRDDLNSICKEVEGKSQA
EVREYAGVFWERCNELTDIDKIMAQIERGEAKIQRRISIKRAMEAKMARY
KSPFHQLRIQYGTNKGKNYTEEEDRFIVCMLHKLGFDRENVYEELRQSVR
SAPQFRFDWFIKSRTAVELQRRCNTLITLIERENQELEEREKREKRKGAK
PNAARTPAQGKRKNEVVAAKPAKKAKN

Run BLAST on NCBI

transcript from alignment at sc0000005:447901..462969+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000697 ID=TCONS_00000697|Name=TCONS_00000697|organism=Clytia hemisphaerica|type=transcript|length=15069bp|location=Sequence derived from alignment at sc0000005:447901..462969+ (Clytia hemisphaerica)
CGACGCGGGAAATGTAATCTGACAtctgattttttaaatatatactTTGT
ACATGTTTGGCCtaattttacaatatttttagaatattatactcaaaaaa
tggctgaTCAAGTTGACGAAAAAACAATCCAAAATACTGATGAAGTATCT
AAGGAAGAAACCAAAGAAGAGGAGGTGACAACGAAAAAGGAAGATGAGAA
GACAAATGAACAAGAATCGGAAGGAGAATCTACTGTAAGCATGGTTAATT
AAGTTTGAGGGTTAATGGCAGTGTAGGTGGAACTtccataccgtcaactg
ctctaactttggactatctgacaaaacatggatgggacggcaattcggcc
actaTTTCactagcaactccagaagatttttcaagttttaattttttttt
caaaatctatcctatcttgtagagctttgaaaaagaaagaaaatgagggg
tcataggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTAGCATACATAGAAAtaaagttccaagggttcaaagttcacgg
aaaaatgaaacatttggtttgacgtcaacgaaagttgcatgacttctgga
gtcgctaattTCACCGATAGCGACTCCAGAAAGTCAAGCAACttttgttg
acgtcaaaccaaatgttttatttgtccgtgaactttgaacccttcgaaat
ttttttctatgtatgctaaagcgttccggtttttactaaaagaaagcctG
TGATCTTAGTTTTCCAGTAATAACACTGTGGACTCAgtctagacggcaaa
ttggtaaagtgCCAAacgtttttgcaacattttctaAATTGTATTCCGAC
GGGAGAAGAAAAAGTTGCAACTATTGATGAACTGAAAATGGAGGAAAATG
TAGTTTagggctgaaactttgtatgtttatcagaaaaagggaggacgacc
ctgccgacgcaccggactgtccggtgtatttgtccggtggcaaaaagtat
cctttcacagtccggtgttgcatacagggaattttggacgccggacattt
atgaaacaaaaaattaagaaacaccggacgcaccgaactggtcatgtccg
gtgttttgattgtccggtgggaaaaaatatccttctctgaCACcagacat
ccgacttccttaagtccagTGTAGAAATtatccggtggtaaaaaaaattc
tcattttacaccagactttcgtgtgtccggtgttcgttaagtccggtgcg
gcGGCAGGGTCCTAAAAAGGGTgatgaattcaaaaatcacattggctaat
ttttagttctttcattttcatgtagtttttttcacttttttgcttcttta
gcatgggaatgtccacAAAAAAAGCTtatatttctgccgaaatggatttt
cttttcatttggggtttctcctttcagaaaaacttattctttacatataa
ctttttgttcctctatttccagaggccccttgaaaatgggtcctactacc
ttttttgactcatttcaacctttttcaagctacttttcttcaaaaacaaa
aataaaacaatatcgTCAACTGCTCCGACAGTTactcacactagcgtccc
gccaaaatgcatatcaaagattaatgctacaaaagcgctatatcgtttac
ctgactctcaagcaagaaaatgcGCCGCAAACTTCTAAatggattcatga
aaaaataacccggcgctttttaatgaaattaacattctcaaaaactatga
gaaattgcctaaaatttgagccatagattaANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctgccg
gataggctatttcccggaaattttgccagacctcaaacactgacccattt
acatgtgcggaattgtttttacttaagcgtataaacaaggcctttaaaaa
tcgaagcgctgtctcgggaattgaatgacaaatttgggttggttgatttt
ggctgctgcacgttttattttgtttcaaactttcaagttttaattaattg
tcttgcaaacttgattcagggaactctcatccttgttgttgcaaatacat
cctgtagatgactgatgttgttttttctaaaagcttgatttcctagtgtg
actaactgtccgacttgggactatctgacgcAACATGGGgcggccattcc
accaccatttcaccgaacctccaaagtcatttgatttgagtttaataaAC
CGCGTactaaaaaatacacgatttctctttcgtcACTCGCGCGGAAAGTT
ACatactcgttatttgttaatcccatcgggcgattctctaattctccaat
cagcgtccagtcattttgaatgaaagcaaaaaagttaaaaagggtgcgct
accgtaacttggtctaatgttgacacctctcctctaattccgacaccctt
tttatcagctgaaatttatagaaaggttgaaactgtttttcttttcttag
tggtcagagaggaataatcctttttcaatcagtgattcaagctttcatat
tactcctttctctaaagaagggtgtcggaattagacgNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNag
ggggggtttggaaattttggtcaattttctaatCAAATACAAATTGTCAC
AGTTTgtgttttaaagtaaaaaaaatatgtactatcaaaacaaaacacac
ttgttgataattttgctggtaggtgggaaagcgagtttccttcgaaacgg
attttctgtaaaaaaaaatcccccccggataagatttcattacaaaaggg
ggggatgggtatataggaggggatgggtatataggaggggatgaaataaa
cctaggggggttcatacccctctgcaaactatgtattagaccaacttaca
gtatcagtgaaagttatcgtgacatgttatgacagaaagtatgattcata
aacttggtggagttatcaaaacaaatttgttgtcaaagggATTTTAAACA
GTAAGTGGAAATACAGGCCaaatatcaacagtcccatgtttcaaccaatc
atgaggcccccccagcggtttgcgtgatggcgtgagtgggacttttttct
tgcgtgatggcgtgattagagatttttttggcgtgatggcgtgatcaaaa
TTTTCGCGTGATGCGTAATAGGGCAAAAGTTTGAGGCGTGATgtgtgatt
tgggctatttttcgctattttttgggTGAAGacaaattttagcaattttc
gtgatgcgtgatggagaaaaaatttttgcgtgatggcgtgattaggggta
acgctggggggcctcaattatcccaagttagagctgttGACGGTATTACT
TGGCTAGAAAAAGTTATACATGTTTTCTTTTCTCTCTACAGAATCAACAA
GCCTCAACATTGGGCAGTTAAAGTCCGTTACAGGGGGGTGGGCAACGGCA
GAGTTCCgaggcaaaatatttttttttaattcctgGATTTTGAATACAAA
ATCAATATTTTGGTGGGAAAATCTGGAATTTCTGATACTTTTCTGATACT
AAGATTTTGACAAATTATGTGGAATTTTCAAGGGTTCAAATAAAACTAct
ccaaaatatttcaaataaagattgtttttaagttatgtgttcacctttct
tgacacattctctttaattgatcatatctttagaacaacaaatttttata
tatcaaaagtatatattttctgaaagccaataacattctctttctaatgg
taaaagtttcatttgaatttaaaaaactggacAGGATATAATTagaatct
taagaattttaaccttacctacttcaaagaagttaaagtcacccatagct
cttgaattttgaaaaaattatttcgatactatgttcccaatagattgaac
taaaaaagtgtcttgggattttttttgggattgactttaactcttcaaat
cctaaattctgtaaaaatatcgataaaaaagtaaatttaaatgtgatttt
tttcagttatctgtaaattgaggaaaaacaatcCGGTtcagaaataaaat
cctaagacactttttaagtttgatcttttgggaatctcataaaaaaagaa
tgaagtcgatatctaaatgctatgaGTGACTTTAACTttgttaaaagtag
tatggtgtggtaaaatttcgtttttttctacatcaatttgaaatttttga
caagatgattgctgtttatttgagtaatcagtgaaatgtgtcaaaaatat
tactattcaatagaggtgagaataaacatcatctgaattctctcttttgt
ctttgttgtttccgaaagagacaattatttgagtaaataatccatcataa
gacgaactttgttttgaaatttaaatggttataactctggatcaaaaaaa
gattttaagatcgcgattttaccaaaatgaatccagtaacttttcttcca
ctttgactgaaaaaaaattttttgacaaaaaatcggaaaaaaggtgtaca
cataccttaaaatCAAGTTAGGATTTTTAGGCTGTCATAAGATGCATGAA
AACACCTATTTAGGACATCTAGAGGGCAAATATTCCTCCtcacccaacca
tggtgggcgacattttaAATACCACTGCATTGAAACTCAATTTTTTCTGA
CCAAAACCCTGGTAaggaaaagtgcttggaaaatACCCTGCATTAACTTC
TGGGGTATTTCTATAATCAACTGAAAAGATGCTAGCAAACTCTTTATTAA
GAATTCCAGCATTATCTTTATCATTAGTGTATGGACTGGTATGGATAACA
CCTTCATTAAGGGACTGACTCCGATGACATCTGACTTTTTAGATTTAATA
AAGGCATATGACTTTTTTGAACAACCATCATTATCAAGtgtgttttcttt
gatgtagtTGTTATATGCCTCGTTGCATTTGGTTCTAGCTTAATTTTTAG
CAGATTTCTATTTCTTTCGTTCTTTTTCAAGCTTTGTCCTCTTGTACACA
ATGGCAActgctatttttctttttggctgcTCTTTTGCAGTTTATATTAA
ACCAGGGCTGGTTATATATGTATGGAATTCGATTCCCTGTAAACTTAATA
GAGGAGTTTCTGtcttaggggtcactcacatattgattcttcccacgact
aacctggactaacgtcaaattgacgctaatttgaaactgaaaatacaggc
cagatatcaacagtcccatgtttccaCCAATCGTCCCACCAAGtcagagc
agttgacggtatattttctccttcactttcatcgttgtttctTTCATCTT
TAATTTTGCTACTGCTtgctcagtttacattttaaaatttaatggagata
atttctgaactttttttttctgttgccagaattaattatctccgtaatca
taatcaacagaatagcggcatttcaaaaagagaaaaaagaccGACCGTCT
GCAAAATTCAAGGGCCGCGCGGACCATCTAAACAAAAAGAAGACATAAAC
AttgggccgtttgttttggttaaaattgttctataaaATAGCAAAGCGAA
CGGAATACTTAGGTAtataaaaagaggaaaagaaatatggaaagtaacat
ttttcaagaaataaacggctcaaaaatcgatatttctggtgaaatttctt
aacTCTAACCCCCAACCCcttcgcgtcaatttgacgttagtcgtgagaat
cgatatgtgagtggcccTTTAGCTGAAAGGTTGGAAGGTCTGCTCCGTTc
aaattttgcacctttgtGGGTAGATTGGTTTAATACTTGTCTGTCAATAC
TTTTTTCATAGCCCTAGTCATAGTCCAGGCTTTTGACCCATAAAGAAAGA
TTCAATTAAGGTTTTGAAAGTCTGCACCTCACCTATGCAACTCACTAGCT
AAAGTCTTATTAATTGTACAGGATGATGAAGATGACAAACCAAAACCGCC
ACCAGTTAAAATCAATAAAGCTATGGCTGTCAATGAAGAATACAATGAAA
AGATGGAACATGATAGAGCATCAAGATTCAGTTTTCTATTAAAACAAACT
GAAATATTTTCCCATTTCTTAAATGGAGCTGGTAAAAAGCCACCAAAAAg
tcctttaaaaatgaaaaagcagCCTGATCTTCCTTCCAGTCCACCACCAA
AGAAGGGGGCTAAAGAGtaagtgaatttttctttcactATTTATTCATCC
CTTTATCTTTTAGAGTGTCCATACTATACACTTTATCAATACCCACGTCC
GttattcagaaatttcaaatagtCATTCCATCATGTTTTTTATTCGTTCT
CTTTCAGCCATCGTCATCGACGTaccgagaaagaagaagatgaagagcTT
TTGGAAGATTCCAAGAGTTCTCAAGCACATGTTGTTCAATTCACCGCTTC
ACCTTCATGTAAGGTTTAATTCACACAGCTccaaataacgatttcaagcg
TTACACAAAATGTCTGATCAGAGTTGCTCTTGAAACTCAATTTTTGCTCG
GACAAGAAGTAGTTTTTTCGTTATCTTAGATCAGAGATTGTCCGATGAAC
GACCCTTATTTCAAGGCCTGATCCAATTTTCCTCTGAAAATTCCAATATA
TAATAAACGAGCTACACATGATATCAATCGTTATTTTATTCATTGTTTAA
ACAAACACTTACACATTGTTCATATTACCAGTGCAAATCTGATCATTCTT
CCCTccatgaatttcaaaaaaattttcttctactacaaatttttaatttg
ggAAATATTAACTGTGTTTTTCAGATATTAAATTTGGAACAATGAGGGAC
TACCAGATTAGAGGATTGAATTGGATGATTTCGCTTTATGAAAATGGTAT
CAATGGAATTCTAGCTGATGAAATGGTACTTCGTTGATActttctttatt
tgcttgtgcATTATCCATTTTTGGTGTGTCCATTTTATGTTATTTGACAT
TGAATtcacatttgaaaatttttttagggTCTTGGTAAAACTTTGCAAAC
TATTTCATTGATTGGTTACATGAAACATCACAGAAACAACTCTGGTCCAC
ACATTGTAATTGTTCCCAAATCCACTCTTGCTAATTGGATGGCTGAGTTT
GCAAGATGGTGTCCAACTATAAGGACAGTTTGTTTAATTGGTAACCAAGA
TCAGAGGGTAATCAAAATATTTACGTTTTGTTTTGGCAaggtttttcaag
tttttcaactTTACTTTGCGAAATTGTTGTTTTTCCCAGAACCTCTGAGA
GACTTCATTAAACTTAGTAACacatataaaaaatattagtCATAACATTG
TGAGGGAATTAAAACATGTGtgatattgttttattttaatttgataTAAT
TACTACTCTTATTATTTCGCATTTTAGTCAGCAATAATCAGAGATACATT
GCTACCGGGAGAATGGGATGTTCTTGTTACATCATACGAAATGTGTATTC
GTGAAAAAACTGTACTCAAGAAATTCGCTTGGAGATTCTTGTGTATTGAT
GAAGCTCAcagaatcaaaaatgaaaaatcactgGTAAAGTTTATAATGAT
TTTTTGCTCCTCTTATAACTGCCTTCATTATGAAGCTTTAAAAGATTATC
AAGGATATTCGAAAAAATTATCGCATTTCTACTTTACTAAGTTTTGTAAA
GCAAAACTGGTCCacctttttttacttttttgttgtcaacaaatttaatg
aaaaattatcCCTTATAGCTTTCAAGCATTGTTCGTGAATTCAAATCATC
AAACAGACTTCTGCTCACTGGTACCCCACTACAAAATAACCTCCATGAAT
TATGGGCTTTGTTAAATTTCTTACTCCCTGATGTGTTCAATTCGTCTGAT
GACTTCGATGCTTGGTTTAATGCTGAGAATTTGTCCGAAGAAGATGCCAT
TGTCAAACGGTTGCACGCTGTaggtttattatttttatttatcggtgatc
caaaaaatatcatataTTGTAATCGCAACTGTTTGATAACTATTACGTAT
CAGTTGATATTTTGTACAAAACTAATTGTAGTATCACATTTTTCAACTTA
GCTTTTCCGAAGTTTCCAGATTTTGGAAACATGTAATTATTGATTAAAAT
CATCCGTAGTTTTAAGAGGAAAATACCCAGGATTCAAAGTCAGCGGTGAC
ATTGAAGTTTCagagtttttttttacaattccGTCAATAGGTTTTACGTC
CTTTCTTACTACGTCGTTTGAAAAGTGAAGTCGAGAAATCTCTCCTTCCA
AAGAAGATCACCAACGTTTACATAGGATTGAGTGCAATGCAAAGACAATG
GTACACCAAGTTACTGATGAAGGATATTGATATTGTCAACGGTGCTGGTA
AAACTGACCGGATGAGATTGTTGAATATCCTTATGCAGCTTCGAAAATGT
TGTAATCACCCTTATCTTTTCGATGGAGCTGAACCTGGTATGTTTATGCC
GCCCTTTGATGTTCATCCATATAGAAGAAgcatgaaaaaagttttgaaaa
tgcCCTCGTAACCAATATTAATTATGTCATTAGAAATATTATTAAAATGA
ACAAAGAGACCCTACTTCAATACAGTGTCCTTAGTTTAACAGTTCGTTGG
TAAATTGAGATCATTCCGCTATTCTCGTGTCAAGTCTCGTGTTAACACTC
TTTATGAGgtagttttctttttaaaatttaaaaagtattgatgaaaataa
aatctagaTTAACTTTTAATCGTTAGAAAAAGATCAAAACCCAAACAACC
CTGCCTGATTCTGACCCtgttttttcactttcttcttaGGACCACCATAT
ACAACAGACGTTCATTTGGTTGATAATTGCGGTAAAATGAGTGTCTTGGA
TAAACTGTTGGTGAGAATGAAGGAGCGAGGATCACGTGTTTTGGTGTTTA
GTCAGATGACTCGTATGCTTGATATCCTGGAAGATTACTCTATGTGGAGA
GGTTTGTCCGTTTCTTTTGCTCAGGTTTCGGCGCTCCGTTTGGTTTCACA
ATGCAATTACTGGCCATTctgtttgattttcaaattgattttattgaaat
taagccaaacttttgaaaaaaatgtaaaataatcGAGAGTTTGAAATCTG
CTTATCCACATGCAGTCAAACTCGAATTTCTATATTATATCGAGTCCTCG
AAAAGCCTAACTCGAACGATCAATATCGACTCCCTCTGTAGTTTTACAAA
TTTGACTGTACTCATTAAACCTCGCACTTCCAGGTTTCCAATACTGTCGA
TTGGACGGTCAAACACCACATGAAGAACGTACCGCTCAAATTAACGATTT
CAACTCACCTGGAAGTgacaaatttgtgttttttctgAGTACACGTGCTG
GAGGTCTGGGTATCAATCTTGCAACAGCTGATGTGGTCGTCATGTTTGAT
AATGATTGGAATCCACAAGTCGATCTCCAAGCACAGGTATGTTATTTATT
CAAGACCCTTCAGTTCAGCCAGGACCTCTTTCAGCTCTTCAAAAAAGCTA
AATTGACCGCCTATTAATTCAACTAGCTAAGTCCAGTTTGGTTTGCACGC
TTCAACTATCTATCCATTTATGCTCAGGCAAGTAATTTTAaggagaaaag
aaagaaaatttctttagaAATGCTATATGTTGAGTAAACTGTTCAAAACT
TATAGTGTAAAATGCTTTCACGTAAGAGCAGTGTCGTATCTTTCTTCAAA
AGAATATCATATTTGAAATCATTGAATATGTACTAGTAATgacatggttt
agagggtgatttgggattaataaccccgaggttcattgaaaacatttcaa
aatagcccgaacgTAGTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ncccgagaataccatgttattccgcgttaattatatggtcaaaaaaagaa
ttgaagaacactcaatcgctattcttttcgaaacttataaaaacattcga
agctataaaaaaacattcgactgacactcttattttgattggcttaaaaa
tttcgtacgatattttgttaagCAATCAAAATATCGTAAGATACTTGTCT
TTCAACCAATAGAAATTTTTGtttacatcagggcgattacaaaaaagcgg
ggctattacggatttatcgccccgctcgtcctttacaaatctaagctaaa
tgtaatcaaccatataattagacctaaaatcaaaatgttaGTGATATTTC
ACAAATTTACTTTCAGTTCACAACTGACAGAAGAAATCTTGTCTTCATGT
TTTAGGATCGAGCACATCGTATCGGTCAAACCAAACAAGTACAAGTATTC
CGTTTCATCACCGAAAACACCATCGAAGAAAGAATTATTGAACGTGCTGA
AATGAAATTACGTCTTGATCGTGTTGTCATTCAACAAGGTCGATTGGTGG
AAGGACAAACGAAACTACAGAAGGATGAAGTACTGAACATGATTCGACAT
GGTGCTGATAAAGTCTTCGCTTCCAAAGATTCAACTGTCACTGGTGAAGA
TATTGATCTTATCTTGGAAAGAGGTGCTAAGAAGGTACACCAGAGCATTA
GtattaaattttgatgaaaagctgAGTTTGGCACCAATGAAAACAGTCTT
GTTTTTTTGGCGAGGAAAGGACATAATCttccaaattttaattttcttaa
actATCTGAATTTCGAGTTCTTTCTAGTGATCATTTGTGAAATGTAGTGT
TAAGTTCGACCATCAGAACACTCTCCAATGATTTTCTGTATAGTTTTTTT
TGAGACTGCTCTGAATTCTTTTAAAGTCTTTACGATGCAATCTTTAAGTA
TAAAGAATATCCTTTCACTTTTTCATTCTGATAGACTGAGGAGATtgcca
aaaaaatgtcagattTGGGCGAAGGCCAACTCAAGAATTTCACCATGGAT
GCACCTGACAGTATTTACAAATTCGAAGGTCAAGATTTCCGTGAGACGCA
CGATAAACCCGGCGTATCTCACTGGATCGAACCACCAAAGCGTGAACGTA
AAGCCAACTACGCTGTTGACACCTACTTCAAAGAACTAATGAGAGTAAAC
GAGCCCAAAGCACCCAAAGCTCCTCGACCACCCAAACAACCTAACGTCCA
AGATTTCCAATTCTTTCCACCAAGATTATTCGAACTTTTGGATATCGAGA
TTTACAGCTACCGAAAGGGGATTGGATACAAGGTAATCTGcatttttgtt
acttttctggTTTTTAAGCATTcatcgaaaaaaataatttgatgctAAAG
GTTTTTGTGTCtagaattagagagagtcaactgtagctACTGTTAGGGTT
ATATGAATATAGACTGAACGTAATCGTTGTCTCGCAGGTACCACGTGATT
ATGACATGGATGACGCCGAATCGAAGAAATTCCAAAAAGAAGAACAATCA
AAGATCGATAATGCTGAACCACTGAGCGAAGAAGAACAAACGGAAAAAGA
ACAATTGTTAGCTCAAGGTTTCACCAATTGGAATAAACGCGATTTCAATC
AATTCATCAAGGCTTGCGAGAAATACGGTCGTGATGATTtgaattctatt
tgtaaagaagTGGAAGGGAAATCACAAGCGGAGGTATATTTCAACGGTCA
ATACAGTCTTCCAATTTGTATATATGAGTTGTCCTTTGTTTCTGAgtcaa
tttttacaaaattacgCCAAAATTACGCCAATTCGAGTTTCATTATCTCG
CTGCCGACTATGAGTATACTCGTAGTTGAGAGGGTCAAAATACCGGAAGT
ACTTAAAGGGTCATATCATGTCATATATCTTTTGATACTGAAGCTTTTga
aatttgcttttttattgCGATTCTGCATCGATTGGCGTACAACTTGAAGG
CATTTGAAGCAAAACTAAGGCGACAGGAGcctctgaaagtcaaactttcg
atgAAATTCCGAGaggtcaaattttttgaaaagggcTTGGCAGTAAACGT
GAATTGATTTGCATCAACCATCAGTTCTTAGCTAACAATTCCTAATGCCT
AGAactggaagaaaaaaaactaattgtAAAGCTTCTTTGCTATAATTTCT
AGGTCCGAGAATATGCTGGTGTGTTTTGGGAACGTTGCAATGAGCTGACT
GACATTGACAAAATCATGGCACAGATCGAACGTGGCGAAGCCAAAATTCA
ACGAAGAATTTCTATTAAAAGAGCCATGGAGGCTAAGGTATTAACCCCTT
CAATAAACTGCGTTGTCTGTGCAGGTCTGTGACGTTTGTTTTAGTTTGTT
TGGAGTGACCTTAGGAAAAGTTCGAGTTAATGTTGGTTTGAGATTATGAG
TACACATTTTTTGTATGAGAATTTTTAACGCTTAGGTACATTCAGGCTCA
AATCTTGAAAATACTTTGAGAATTGGGTAAGTATCATTCGAACCTCAGTT
tacgaaatatgaaaatatcatTTAAATAGAAAGATACACCGCCAAAGCTT
TGTAAGACTCGCGAAGGATACCTCGTGTTCATAAAAACCTATATTAGATT
GATATCATTGGTGTTATTAAAATTGGTAGGGTTAAGGAAACCAAGCTTGT
GAATAAACCTTACAAATTAATTTTGTAGATGGCAAGGTACAAGTCACCGT
TTCACCAGCTCCGCATACAATACGGAACTAACAAAGGAAAGAATTATACC
GAAGAAGAGGACAGGTTTATCGTAAGTCATCCTCATAATCCCTCCTGATT
AGTAtatctttatatttttctctctaTTCCTTCAACAGAATCTCATATCA
TAGGTCATTATCTTCGAGGGATGAAGATATCTTCGATATATTTTGTTATA
GGTATGCATGTTACACAAATTGGGATTCGATCGGGAGAATGTATACGAAG
AATTACGTCAATCTGTCCGAAGTGCTCCTCAATTTCGATTTGATTGGTTT
ATCAAATCTCGAACTGCAGTGGTGAGTTTATTTCTTATTTGTTGGGGACT
TTCAAATAATGTCCGCCTTCTCTTTAAGCAGAAAGAGTCCCAATAGAAGA
TTGTTTCATAAACTGTAGAATACCGttcttttcaaaatgaaataaaattt
tgcacTGGTTGGAAATGATAGTTTACTCTCAAACGAGACCAATAAAATGT
TTTGGACTACACTTTTGCTAATTACAGTTGTTGAGTTCCTGTTAGTGTTA
AGACTTTACAGTTGTATTTCTCTATTTATGACAGGAATTGCAAAGACGCT
GCAACACTTTGATCACTCTCATTGAAAGAGAAAACCAAGAGCTTGAAGAG
CGAGAGAAACGTGAAAAACGCAAAGGAGCCAAACCAAATGCTGCTAGAGT
GAGTTTATTTCTAGTTTTTGTTATTGAAGCTCATTCTTTGCAATGCTGAC
TAAAAGGGCTTGTCATGAAATCTCGAGAATTTCCTTATCATGGGTTATCA
TGATTTGTTCTTGCAAACATCATTTTCAGGTTCGAGCAGAAAGGTCGAGT
GTCTCTGATAGTTTTGAACAGTTGATTTCCCTAAGGGTTGAGGTTTCTGA
TTATTTCAATTGATTTAATATGGTAATGGTTTTCATTCTGATTCATTTTA
TATTTCAGACCCCTGCTCAAGGAAAGAGGAAAAATGAAGTTGTGGCTGCT
AAACCCGCCAAGAAAGCCAAAAACTAATCGGAAGTTGTACGAGGAGTCTA
TAATGCCATCCATTTCCATCTTTTATTGAGAACACCGTCACATGGATGAA
GTTTATTTGTTCAGAGAGACACTTACATCAGGTTTTCATGCGGTGATGAG
TCAACTAGCACAAAATCTTTCGCTGTATTTATTTCCTTTTTACGTTACTA
GTGTattatttttacaaaagaataaTCGCTACATGTTTTTAAATAGTTAA
CCTTTTGTTTTTTCAGATTCTCTATCAAacaattgtttcaatttttttat
tatgtaccttaagtggataaattttggcggggattaaatttggcgaattt
ggcgaattgtgccaaaattcggcaattcgccaaattaaatccccgccaaa
tttaacaaaaagagaattatttgaaaaatcacaactttttagtatatttt
tgagtaattttcacccatttcagtgtgacaaaatttccaattcgccaaat
aaaatccccgccaaattttacgaaattgatctatcgccaaattaaatcca
cgccaaaatttatccactt

Coding sequence (CDS) from alignment at sc0000005:447901..462969+

>TCONS_00000697 ID=TCONS_00000697|Name=TCONS_00000697|organism=Clytia hemisphaerica|type=CDS|length=3234bp|location=Sequence derived from alignment at sc0000005:447901..462969+ (Clytia hemisphaerica)
CGACGCGGGAAATGTAATCTGACAtctgattttttaaatatatactTTGT
ACATGTTTGGCCtaattttacaatatttttagaatattatactcaaaaaa
tggctgaTCAAGTTGACGAAAAAACAATCCAAAATACTGATGAAGTATCT
AAGGAAGAAACCAAAGAAGAGGAGGTGACAACGAAAAAGGAAGATGAGAA
GACAAATGAACAAGAATCGGAAGGAGAATCTACTGATGATGAAGATGACA
AACCAAAACCGCCACCAGTTAAAATCAATAAAGCTATGGCTGTCAATGAA
GAATACAATGAAAAGATGGAACATGATAGAGCATCAAGATTCAGTTTTCT
ATTAAAACAAACTGAAATATTTTCCCATTTCTTAAATGGAGCTGGTAAAA
AGCCACCAAAAAgtcctttaaaaatgaaaaagcagCCTGATCTTCCTTCC
AGTCCACCACCAAAGAAGGGGGCTAAAGACCATCGTCATCGACGTaccga
gaaagaagaagatgaagagcTTTTGGAAGATTCCAAGAGTTCTCAAGCAC
ATGTTGTTCAATTCACCGCTTCACCTTCATATATTAAATTTGGAACAATG
AGGGACTACCAGATTAGAGGATTGAATTGGATGATTTCGCTTTATGAAAA
TGGTATCAATGGAATTCTAGCTGATGAAATGggTCTTGGTAAAACTTTGC
AAACTATTTCATTGATTGGTTACATGAAACATCACAGAAACAACTCTGGT
CCACACATTGTAATTGTTCCCAAATCCACTCTTGCTAATTGGATGGCTGA
GTTTGCAAGATGGTGTCCAACTATAAGGACAGTTTGTTTAATTGGTAACC
AAGATCAGAGGTCAGCAATAATCAGAGATACATTGCTACCGGGAGAATGG
GATGTTCTTGTTACATCATACGAAATGTGTATTCGTGAAAAAACTGTACT
CAAGAAATTCGCTTGGAGATTCTTGTGTATTGATGAAGCTCAcagaatca
aaaatgaaaaatcactgCTTTCAAGCATTGTTCGTGAATTCAAATCATCA
AACAGACTTCTGCTCACTGGTACCCCACTACAAAATAACCTCCATGAATT
ATGGGCTTTGTTAAATTTCTTACTCCCTGATGTGTTCAATTCGTCTGATG
ACTTCGATGCTTGGTTTAATGCTGAGAATTTGTCCGAAGAAGATGCCATT
GTCAAACGGTTGCACGCTGTTTTACGTCCTTTCTTACTACGTCGTTTGAA
AAGTGAAGTCGAGAAATCTCTCCTTCCAAAGAAGATCACCAACGTTTACA
TAGGATTGAGTGCAATGCAAAGACAATGGTACACCAAGTTACTGATGAAG
GATATTGATATTGTCAACGGTGCTGGTAAAACTGACCGGATGAGATTGTT
GAATATCCTTATGCAGCTTCGAAAATGTTGTAATCACCCTTATCTTTTCG
ATGGAGCTGAACCTGGACCACCATATACAACAGACGTTCATTTGGTTGAT
AATTGCGGTAAAATGAGTGTCTTGGATAAACTGTTGGTGAGAATGAAGGA
GCGAGGATCACGTGTTTTGGTGTTTAGTCAGATGACTCGTATGCTTGATA
TCCTGGAAGATTACTCTATGTGGAGAGGTTTCCAATACTGTCGATTGGAC
GGTCAAACACCACATGAAGAACGTACCGCTCAAATTAACGATTTCAACTC
ACCTGGAAGTgacaaatttgtgttttttctgAGTACACGTGCTGGAGGTC
TGGGTATCAATCTTGCAACAGCTGATGTGGTCGTCATGTTTGATAATGAT
TGGAATCCACAAGTCGATCTCCAAGCACAGGATCGAGCACATCGTATCGG
TCAAACCAAACAAGTACAAGTATTCCGTTTCATCACCGAAAACACCATCG
AAGAAAGAATTATTGAACGTGCTGAAATGAAATTACGTCTTGATCGTGTT
GTCATTCAACAAGGTCGATTGGTGGAAGGACAAACGAAACTACAGAAGGA
TGAAGTACTGAACATGATTCGACATGGTGCTGATAAAGTCTTCGCTTCCA
AAGATTCAACTGTCACTGGTGAAGATATTGATCTTATCTTGGAAAGAGGT
GCTAAGAAGACTGAGGAGATtgccaaaaaaatgtcagattTGGGCGAAGG
CCAACTCAAGAATTTCACCATGGATGCACCTGACAGTATTTACAAATTCG
AAGGTCAAGATTTCCGTGAGACGCACGATAAACCCGGCGTATCTCACTGG
ATCGAACCACCAAAGCGTGAACGTAAAGCCAACTACGCTGTTGACACCTA
CTTCAAAGAACTAATGAGAGTAAACGAGCCCAAAGCACCCAAAGCTCCTC
GACCACCCAAACAACCTAACGTCCAAGATTTCCAATTCTTTCCACCAAGA
TTATTCGAACTTTTGGATATCGAGATTTACAGCTACCGAAAGGGGATTGG
ATACAAGGTACCACGTGATTATGACATGGATGACGCCGAATCGAAGAAAT
TCCAAAAAGAAGAACAATCAAAGATCGATAATGCTGAACCACTGAGCGAA
GAAGAACAAACGGAAAAAGAACAATTGTTAGCTCAAGGTTTCACCAATTG
GAATAAACGCGATTTCAATCAATTCATCAAGGCTTGCGAGAAATACGGTC
GTGATGATTtgaattctatttgtaaagaagTGGAAGGGAAATCACAAGCG
GAGGTCCGAGAATATGCTGGTGTGTTTTGGGAACGTTGCAATGAGCTGAC
TGACATTGACAAAATCATGGCACAGATCGAACGTGGCGAAGCCAAAATTC
AACGAAGAATTTCTATTAAAAGAGCCATGGAGGCTAAGATGGCAAGGTAC
AAGTCACCGTTTCACCAGCTCCGCATACAATACGGAACTAACAAAGGAAA
GAATTATACCGAAGAAGAGGACAGGTTTATCGTATGCATGTTACACAAAT
TGGGATTCGATCGGGAGAATGTATACGAAGAATTACGTCAATCTGTCCGA
AGTGCTCCTCAATTTCGATTTGATTGGTTTATCAAATCTCGAACTGCAGT
GGAATTGCAAAGACGCTGCAACACTTTGATCACTCTCATTGAAAGAGAAA
ACCAAGAGCTTGAAGAGCGAGAGAAACGTGAAAAACGCAAAGGAGCCAAA
CCAAATGCTGCTAGAACCCCTGCTCAAGGAAAGAGGAAAAATGAAGTTGT
GGCTGCTAAACCCGCCAAGAAAGCCAAAAACTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000440	XLOC_000440	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000697-protein	TCONS_00000697-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000005	supercontig	sc0000005:447901..462969 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
171.448	160.278	237.301	224.915	129.734	103.069	92.8214	102.659	92.4261	97.2955	126.402	87.2932	97.1336	100.425	88.669	93.4823	100.152	106.077	50.6265	47.7125	68.1368	70.4184	83.9484	88.0961	181.642	193.538	62.1234	63.0616	54.0084	55.8986

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR014001	Helicase_ATP-bd
IPR001005	SANT/Myb
IPR000330	SNF2_N
IPR015194	ISWI_HAND-dom
IPR015195	SLIDE
IPR017884	SANT_dom
IPR009057	Homeobox-like
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0031491	nucleosome binding
GO:0003676	nucleic acid binding
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0043044	ATP-dependent chromatin remodeling
GO:0006338	chromatin remodeling

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043044	ATP-dependent chromatin remodeling
biological_process	GO:0006338	chromatin remodeling
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0031491	nucleosome binding

Blast

[Close]

BLAST of TCONS_00000697 vs. Swiss-Prot (Human)
Match: SMCA5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1)

HSP 1 Score: 1310.05 bits (3389), Expect = 0.000e+0
Identity = 679/937 (72.47%), Postives = 797/937 (85.06%), Query Frame = 1

Query:  304 YNEKMEHDRASRFSFLLKQTEIFSHFLNGAGXXXXXXXXXXXXXXDLPSSPPPKKGAK-------DHRHRRTXXXXXXXXXXXXXXSQAHVVQFTASPSYIKFGTMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLIGYMKHHRNNSGPHIVIVPKSTLANWMAEFARWCPTIRTVCLIGNQDQRSAIIRDTLLPGEWDVLVTSYEMCIREKTVLKKFAWRFLCIDEAHRIKNEKSLLSSIVREFKSSNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSDDFDAWFNAENLSEEDAIVKRLHAVLRPFLLRRLKSEVEKSLLPKKITNVYIGLSAMQRQWYTKLLMKDIDIVNGAGKTDRMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDVHLVDNCGKMSVLDKLLVRMKERGSRVLVFSQMTRMLDILEDYSMWRGFQYCRLDGQTPHEERTAQINDFNSPGSDKFVFFLSTRAGGLGINLATADVVVMFDNDWNPQVDLQAQDRAHRIGQTKQVQVFRFXXXXXXXXXXXXXAEMKLRLDRVVIQQGRLVEGQ-TKLQKDEVLNMIRHGADKVFASKDSTVTGEDIDLILERGAKKTEEIAKKMSDLGEGQLKNFTMDAPDSIYKFEGQDFRETHDKPGVSHWIEPPKRERKANYAVDTYFKELMRVNEXXXXXXXXXXXXXNVQDFQFFPPRLFELLDIEIYSYRKGIGYKVPRDYDMDDAXXXXXXXXXXXXIDNAEPLSEEEQTEKEQLLAQGFTNWNKRDFNQFIKACEKYGRDDLNSICKEVEGKSQAEVREYAGVFWERCNELTDIDKIMAQIERGEAKIQRRISIKRAMEAKMARYKSPFHQLRIQYGTNKGKNYTEEEDRFIVCMLHKLGFDRENVYEELRQSVRSAPQFRFDWFIKSRTAVELQRRCNTLITLI 3090
            Y EKM+ DRA+RF +LLKQTE+F+HF+  A +K P SPLKMK     P  P  KK  K       D+RHRRTE+EEDEELL +S  +     +F  SPSY+K+G +RDYQ+RGLNW+ISLYENGINGILADEMGLGKTLQTISL+GYMKH+RN  GPH+V+VPKSTL NWM+EF RW PT+R+VCLIG+++QR+A +RD LLPGEWDV VTSYEM I+EK+V KKF WR+L IDEAHRIKNEKS LS IVREFK++NRLLLTGTPLQNNLHELW+LLNFLLPDVFNS+DDFD+WF+  N   +  +V+RLH VLRPFLLRR+K++VEKSL PKK   +Y+GLS MQR+WYT++LMKDIDI+N AGK D+MRLLNILMQLRKCCNHPYLFDGAEPGPPYTTD+HLV N GKM VLDKLL ++KE+GSRVL+FSQMTR+LDILEDY MWR ++YCRLDGQTPH+ER   IN +N P S KFVF LSTRAGGLGINLATADVV+++D+DWNPQVDLQA DRAHRIGQTK V+VFRFIT+NT+EERI+ERAEMKLRLD +VIQQGRLV+    K+ KDE+L MIRHGA  VFASK+S +T EDID ILERGAKKT E+ +K+S +GE  L+NFTMD   S+Y FEG+D+RE   K   + WIEPPKRERKANYAVD YF+E +RV+EPKAPKAPRPPKQPNVQDFQFFPPRLFELL+ EI  YRK IGYKVPR+ ++ +A   + QKEEQ KID AE L++EE  EKE+LL QGFTNWNKRDFNQFIKA EK+GRDD+ +I +EVEGK+  EV EY+ VFWERCNEL DI+KIMAQIERGEA+IQRRISIK+A++ K+ RYK+PFHQLRI YGTNKGKNYTEEEDRF++CMLHKLGFD+ENVY+ELRQ +R++PQFRFDWF+KSRTA+ELQRRCNTLITLI
Sbjct:   80 YEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMK-----PGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQ-KIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRNPELPNA--AQAQKEEQLKIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLI 1008

The following BLAST results are available for this feature:

BLAST of TCONS_00000697 vs. Swiss-Prot (Human)

BLAST of TCONS_00000697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SMCA5	0.000e+0	72.47	SWI/SNF-related matrix-associated actin-dependent ...	[more]

You are here

TCONS_00000697 (transcript) - C. hemisphaerica