|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000732 ID=TCONS_00000732|Name=TCONS_00000732|organism=Clytia hemisphaerica|type=transcript|length=6002bpRun BLAST on NCBI protein sequence of TCONS_00000732-protein >TCONS_00000732-protein ID=TCONS_00000732-protein|Name=TCONS_00000732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1634bp GTRIDGCRVCACQTSGPLPLERLNFGEXSKPSDIEIDSRKTIQNSLYKMMRun BLAST on NCBI transcript from alignment at sc0000005:981061..994059+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000732 ID=TCONS_00000732|Name=TCONS_00000732|organism=Clytia hemisphaerica|type=transcript|length=12999bp|location=Sequence derived from alignment at sc0000005:981061..994059+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000005:981061..994059+ >TCONS_00000732 ID=TCONS_00000732|Name=TCONS_00000732|organism=Clytia hemisphaerica|type=CDS|length=4905bp|location=Sequence derived from alignment at sc0000005:981061..994059+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000732 vs. Swiss-Prot (Human)
Match: PKD1 (Polycystin-1 OS=Homo sapiens GN=PKD1 PE=1 SV=3) HSP 1 Score: 214.542 bits (545), Expect = 2.618e-55 Identity = 139/499 (27.86%), Postives = 237/499 (47.49%), Query Frame = 3
Query: 504 LKNMDDLIEVAECSSLNPY-----SQIEGQTSVTSLTFADDKNEKLKLRNV--EVDIGIPIENVIETPLAENDEILN--KTFIIQPDDLI--VFKLENFTEPSEGWASSALYVLIDVLDDFSFVDEDVSLYSQLAFNEMPTASRRQGHLKKTFKPTSGENERTLMLQGSDYET--------ALANNQSYYFGLDQDGS-SNFTVNITIYITTCRFWNTSTSRWEGFGCKPSPKTTLHLAVCSCNHLTSFGSSINIAPNKLDFTVLKKLDVENNPVMLATCIAIFFVYLILLLVAFNKDSKEAQVQHIIPFIGSEDGFFQYEVRIKTGAYPWAGTSANVGIQVLGTKCTSKARILQGDNPFQRNGLDIFRISLDRSIGKIRKIKIWHDNTGSDPSWYLERVIIRSMVSGEKFFFYCNKWIGVDCGDEK--LEHEFHVADIEEMRKFSTIFYDVIGRSFNDYHLWLSIFEKPKFSKFTRVQRLTCLVTLVFSWMAVNAAWF 1934
L N+ D++++ NP+ S T V S+ F ++ + + E I + + N + + N + ++QP + V L++ + P+ G Y L+D ++ E+ Y + + P + + +P S LQG+D+ + SY+ L S V++ +Y + C++++ W G P +T+ AVC HLT+FG+S+ + P+ + F V + + N +++ TC Y+++ + D +A IPF G + G F+YE+ +KTG +GT+A+VGI + G S R L GD F RN LDIFRI+ S+G + KI++WHDN G P+W+L+ VI+R + + FF N W+ V+ +E E A + +F + + R F D H+WLSI+++P S+FTR+QR TC V L+ ++ NA W+
Sbjct: 2816 LANLSDVVQLIFLVDSNPFPFGYISNYTVSTKVASMAFQTQAGAQIPIERLASERAITVKVPNNSDWAARGHRSSANSANSVVVQPQASVGAVVTLDS-SNPAAGLHLQLNYTLLD----GHYLSEEPEPYLAVYLHSEPRPNEHNCSASRRIRPES--------LQGADHRPYTFFISPGSRDPAGSYHLNLSSHFRWSALQVSVGLYTSLCQYFSEEDMVWRTEGLLPLEETSPRQAVCLTRHLTAFGASLFVPPSHVRF-VFPEPTADVNYIVMLTCAVCLVTYMVMAAILHKLDQLDASRGRAIPFCG-QRGRFKYEILVKTGWGRGSGTTAHVGIMLYGVDSRSGHRHLDGDRAFHRNSLDIFRIATPHSLGSVWKIRVWHDNKGLSPAWFLQHVIVRDLQTARSAFFLVNDWLSVETEANGGLVEKEVLAASDAALLRFRRLLVAELQRGFFDKHIWLSIWDRPPRSRFTRIQRATCCVLLICLFLGANAVWY 3299 The following BLAST results are available for this feature:
BLAST of TCONS_00000732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.