TCONS_00000783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000783
Unique NameTCONS_00000783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000783 ID=TCONS_00000783|Name=TCONS_00000783|organism=Clytia hemisphaerica|type=transcript|length=1348bp
ttagattaaTCTAAGGCAAAAATCAGACTCTTCTCATTCCAAGAACGAAA
CTATCCCAACCAATACTCAGGAAAGTCTTCCTCAACCAATGAATTTGGAA
CAatgcttacaaaaaataaaatggcaTATTGTGGAAAGAGGGACGTTTGC
TACACTAAAATCACCATTTTCGATAAACCTTGAAGACATtccaccattga
ttccaccaaaGCAACGAAAACATGAATACAACACCGAGTCCCAAAAACGA
AGTATATACTTGAAGGAAAACGACTCTGTAGAAGGTGATGTAAATGTACT
ATCAAATCTAATGGAAGAAAAGGGACTGACCATCGACCaaattgagaaaa
tgccaaacaATGAATTATTAGAGACGGCAAAAGCTTGTTCAATTCCAACA
CAAAGTAAATCACAGGATATGCTGAGACTGGATATTCTAAAGCTCTATTC
CAGTATACTTGTTGGAAAGTCATCGTGTCACAAATTTGTGAAATCACCTG
GGCACACTGGAGGTTTTTACCACGTTGTCTGCGCGCATGGAACTACTGTA
TGCTCAAAATTTATGGTTCTAACCGAATCTGTGAGAGATGCAGCCGATTT
GTATTTGTCGCTGAATCACCCACCTGTTTTATTTGTGTGCGATACACCTT
GCACCTTCGCACAACATATCTCGAAGCGCTGTCCAGAACTAGCAAAGGAG
TATTGGGGAGAAATGAATGGTTGTTTTGAGAAACCAGTTTTTGATAAAGA
ACCATCTAATGGAATGGATGTTCCTGAGTTGGTTCCTCCGGAATTTAGGA
GTGGCGAAGGAAGTAAAGGATTGCCAGGAGAAAATCTTGGGTCCTGGCAT
CCTTTAACCGGTAAAAGCAGAAGATATGTTTGCGGCGACAGATTCCACAA
CAAGAAAGATCCCCATGTATCCCCTCTTTGCCGGTACCACGATATCGATC
TTTGTGCACAGTCAAAAACCGTTAAGACCAGCTACCAAGAATCactaaac
aacaaaaaaaataccCTGAGAAACCGATCATCGTGTAATCAAACGATTAT
GATTCACATATATTACAATTTCCTGATGAACTTTTACGAAAACGAGAAAA
TTGTAAAGAGACAGATGAAAGAGCTGCGAAAATCATACGGGGGAAAAGAC
TTGAAGCGGGATAAGTTTATGCGTTTTGTTTGTGCTGATTAAATCAATAC
CCAAGGGTGTTTTTAAAGGCTTAAGCTAAAGTGGATTAACGAGAGTTATA
ATAAAACGATGAATAGCCCAAACTATTCATATAATTCACGGATTAAAAGA
GATGATTGAACGTAAATTTTTTCCTTCCAGAAAAATATTGTATTTCCC
Run BLAST on NCBI

protein sequence of TCONS_00000783-protein

>TCONS_00000783-protein ID=TCONS_00000783-protein|Name=TCONS_00000783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MNLEQCLQKIKWHIVERGTFATLKSPFSINLEDIPPLIPPKQRKHEYNTE
SQKRSIYLKENDSVEGDVNVLSNLMEEKGLTIDQIEKMPNNELLETAKAC
SIPTQSKSQDMLRLDILKLYSSILVGKSSCHKFVKSPGHTGGFYHVVCAH
GTTVCSKFMVLTESVRDAADLYLSLNHPPVLFVCDTPCTFAQHISKRCPE
LAKEYWGEMNGCFEKPVFDKEPSNGMDVPELVPPEFRSGEGSKGLPGENL
GSWHPLTGKSRRYVCGDRFHNKKDPHVSPLCRYHDIDLCAQSKTVKTSYQ
ESLNNKKNTLRNRSSCNQTIMIHIYYNFLMNFYENEKIVKRQMKELRKSY
GGKDLKRDKFMRFVCAD
Run BLAST on NCBI

transcript from alignment at sc0000005:333287..337671-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000783 ID=TCONS_00000783|Name=TCONS_00000783|organism=Clytia hemisphaerica|type=transcript|length=4385bp|location=Sequence derived from alignment at sc0000005:333287..337671- (Clytia hemisphaerica)
TTAGATTAATCTAAGGCAAAAATCAGACTCTTCTCATTCCAAGAACGAAA
CTATCCCAACCAATACTCAGGAAAGTCTTCCTCAACCAATGAATTTGGAA
CAATGCTTACAAAAAATAAAATGGCATATTGTGGAAAGAGGGACGTTTGC
TACACTAAAATCACCATTTTCGATAAACCTTGAAGACATTCCACCATTGA
TTCCACCAAAGCAACGAAAACATGAATACAACACCGAGTCCCAAAAACGA
AGTATATACTTGAAGGAAAACGACTCTGTAGAAGGTAATTAACTGAAGCC
TGTTTCCCATCCAAACTCGTTTTCAGAATGAATCTCTCTTTGTAAAATTC
CTCGAGAATAAATTAGTTTATGTTTTATCTGTATAATAATACCCATACGT
GTCTGAAGCCTTTCTCTGCAGCGTTTTGATTTTCGCTAGCGATTTTAGAT
TTCCGTATATCTTTTTTCGGGGATATGTTTTAGATTCGCATCAATAGCTT
TCAGAGGCTAAAATATGATGTTTGCGATAATCCTTACCCCCTAATTAGTA
CCTATGACAGATATAAAATTGAGTTTGGAGTAATCCGTTATTTTTCTAAA
TTTGCTGTACTTGCTAAAACTTTCCTACATTCTTCCGATGAAGAGTAAGA
TTGTTTTCGAAATTAGACTCAGACTTCATTCAAAACATTTTCAAAGATTC
TCAAAGTCTGTCAAAGTCACACTCAAATGTCTTCACACGATAGCTAGCTA
CGATGGCTAAGGAATCCTTTTTTTGTTATAAAGCTCCTTTATTTGTGGTG
AAAATTAGCACTGCAAGGTCATCTCTTTAACCTAAATCTTTTGAATATAT
ATAGTTTCATCTGCTCCCTGAGATAAAGCAAAGCTAATGATTTAAGTGAC
AAGTCATCTGTGACGACGGGCTGAAACCGCCGGTTCGTATTGTAAAATCA
AAAAAAAACATCAGCTAAAAATGTTGCCTAATATTTCAAAACAATAGGTG
ATGTAAATGTACTATCAAATCTAATGGAAGAAAAGGGACTGACCATCGAC
CAAATTGAGAAAATGCCAAACAATGAATTATTAGAGACGGCAAAAGCTTG
TTCAATTCCAACACAAAGTAAATCACAGGTAAAAACCTAATAAAATCCTT
CTTACACGTTCCTCACAAAGACACTCATGACGAGAGTGATTTATTTTTGA
ATATTGATAAAAAAACATCCTCCCGCATAAGTTCTTGACCTGCAATTGAA
AAATAGTTCGAAAGTAATATTTTAGTCATTGTAAACAACTTTTTTACAAA
ATTATGTTTCAAGTTTTTCTTTGATGGAAAAAGGTAAAGCTTCTAAAAAT
TAAGTCTTGGCTCATGGACCTAAACGAAACATCATCTATCGTCTTTCTAT
GTATAAGACTATCAGTATACGGATCTCAAAAGACATTTTGTGTCTCAAGC
TAGTGCATTTCCCACATGTACTATATTATGCTATTGCTATTTTGACTAAA
GAACTAATTATACCGCTTCTTCTATTCAGGATATGCTGAGACTGGATATT
CTAAAGCTCTATTCCAGTATACTTGTTGGAAAGTCATCGTGTCACAAATT
TGTGAAATCACCTGGGCACACTGGAGGTTTTTACCACGTTGTCTGCGCGC
ATGGAGTAAGCACACGCTTTTTTTTATAAGAACAGTTTTATAAGAACACG
AGGCTGAAAATTGACCAAAACTTAAGAACAACTTAAGAGCAATCCGAGGC
TCAGCTCTAGCGATTTTTTAAAAACAAACTAAATAAGACCAAGACTGAAT
CAAGAATATAGAGAAATGAACACCGTTTGATAAAATTTTTACAGTATACC
CCTGGTTCCCGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAGATG
CACTGTAAGGGTAGAAATTTCAGAAAATTCTTGAAAAATCGAGATATTTT
GCCCAAAAATGCTAGAATTTTGACCATTTTTTGCACGAAAAGCATTGAAA
ATTTGGTTGATTGAAAAATTGCAATTGCATTGGTCAAAATTGACGTAACG
GTTGAAAAGATTTGAACTTCCTTCAACTTTTTTTTTGTTCGCGCGAAACT
TTTTTATGAAGTAATCTTTTCTTCAGGCAAAAACGGTTAAGAAACAATCT
TTCGTGCGCTTCGCACGAAAGTGGACACCGGCCTTAACAATTAGATTTTG
ACCAACACTAAAGGTGGTTTAAAATCTTTCTCACCCCAGTGAAAATCAAG
GACATTTTTACCACTCCACTTTAATTTTCAAAAAATATCTTGTTTCAAAT
TTTTTAAATACCACCACACTGGGTCCTCAACAACCACTAGTGCACAGAGA
CAGGGGTGTTTACATACCTCGTGCTAACATACCTTTTCTACCAATTTATA
ATTTTAGACTACTGTATGCTCAAAATTTATGGTTCTAACCGAATCTGTGA
GAGATGCAGCCGATTTGTATTTGTCGCTGAATCACCCACCTGTTTTATTT
GTGTGCGATACACCTTGCACCTTCGCACAACATATCTCGAAGCGCTGTCC
AGAACTAGCAAAGGAGTATTGGGGAGAAATGAATGGTTGTTTTGAGAAAC
CAGTTTTTGATAAAGAACCATCTAATGTAAGTCAAATGTGAAGGAAATGA
TTTATTCGATAAATTCGATTGTTTTGGATTGATATTTGATTAAATTCTAT
CGATATTCGATCTACTTTTGATTCCTCCGGCACAAGGGGGCCTCTTAGAA
TGCTAATCGGCTAACAATTTCTTTTGTAAGCTAGTTTCCTCACGTAATAC
GTCACTTTGCAGCCCTATACAGAAAATTTTGCTTACCTGTTTTGCTTTGG
CAAATTATGTACAGGCTTAAAATCTCACGTATTAGAGCATTTTACGTACT
AGATATCCTCTTGCTTAACCTCGCTAATGGATGCCTTATTGTGTAATTTT
AGAAAGTAGACATTATATTGTCAAATAAAGCAATTAACTGGCGTAACGCG
CGCTATTTGGTTTTGATGATTCTTTTTAAGGAGGTGTACTATTTGACGGT
ATCCAGAATATGTATTTGTTGGAAATAAATCACGGGATGACGGGATTTTT
TTGAAAGATTTACGGGATGGCGGGATTTCTTTGAAAAATTTACGAAATGG
CGGGATTCCAGATTACTGTACCCCCCCTCCCCCACTTTTAATGCAATGAT
TTTGCAAGCCCGGCATTTTTTCATAGCAATTCAGAACTCAATTTAAATAT
CGTCAGCCTGACTTTGATTTTTGATATTGCTACATTGTATTTACTAGGGA
ATGGATGTTCCTGAGTTGGTTCCTCCGGAATTTAGGAGTGGCGAAGGAAG
TAAAGGATTGCCAGGAGAAAATCTTGGGTCCTGGCATCCTTTAACCGGTA
AAAGCAGAAGATATGTTTGCGGCGACAGATTCCACAACAAGAAAGATCCC
CATGTATCCCCTCTTTGCCGGTACCACGATATCGATCTTTGTGCACAGTC
AAAAACCGTTAAGACCAGCTACCAAGAATCACTAAACAACAAAAAAAATA
CCCTGAGAAACCGATCATCGTGTAATCAAACGATTATGATTCACATATAT
TACAATTTCCTGATGAACTTTTACGAAAACGAGAAAATTGTAAAGAGACA
GATGAAAGAGCTGCGAAAATCATACGGGGGAAAAGACTTGAAGCGGGATA
AGTTTATGCGTTTTGTTTGTGCTGATTAAATCAATACCCAAGGGTGTTTT
TAAAGGCTTAAGCTAAAGTGGATTAACGAGAGTTATAATAAAACGATGAA
TAGCCCAAACTATTCATATAATTCACGGATTAAAAGAGATGATTGAACGT
AAATTTTTTCCTTCCAGAAAAATATTGTATTTCCC

Coding sequence (CDS) from alignment at sc0000005:333287..337671-

>TCONS_00000783 ID=TCONS_00000783|Name=TCONS_00000783|organism=Clytia hemisphaerica|type=CDS|length=1104bp|location=Sequence derived from alignment at sc0000005:333287..337671- (Clytia hemisphaerica)
ATGAATTTGGAACAATGCTTACAAAAAATAAAATGGCATATTGTGGAAAG
AGGGACGTTTGCTACACTAAAATCACCATTTTCGATAAACCTTGAAGACA
TTCCACCATTGATTCCACCAAAGCAACGAAAACATGAATACAACACCGAG
TCCCAAAAACGAAGTATATACTTGAAGGAAAACGACTCTGTAGAAGGTGA
TGTAAATGTACTATCAAATCTAATGGAAGAAAAGGGACTGACCATCGACC
AAATTGAGAAAATGCCAAACAATGAATTATTAGAGACGGCAAAAGCTTGT
TCAATTCCAACACAAAGTAAATCACAGGATATGCTGAGACTGGATATTCT
AAAGCTCTATTCCAGTATACTTGTTGGAAAGTCATCGTGTCACAAATTTG
TGAAATCACCTGGGCACACTGGAGGTTTTTACCACGTTGTCTGCGCGCAT
GGAACTACTGTATGCTCAAAATTTATGGTTCTAACCGAATCTGTGAGAGA
TGCAGCCGATTTGTATTTGTCGCTGAATCACCCACCTGTTTTATTTGTGT
GCGATACACCTTGCACCTTCGCACAACATATCTCGAAGCGCTGTCCAGAA
CTAGCAAAGGAGTATTGGGGAGAAATGAATGGTTGTTTTGAGAAACCAGT
TTTTGATAAAGAACCATCTAATGGAATGGATGTTCCTGAGTTGGTTCCTC
CGGAATTTAGGAGTGGCGAAGGAAGTAAAGGATTGCCAGGAGAAAATCTT
GGGTCCTGGCATCCTTTAACCGGTAAAAGCAGAAGATATGTTTGCGGCGA
CAGATTCCACAACAAGAAAGATCCCCATGTATCCCCTCTTTGCCGGTACC
ACGATATCGATCTTTGTGCACAGTCAAAAACCGTTAAGACCAGCTACCAA
GAATCACTAAACAACAAAAAAAATACCCTGAGAAACCGATCATCGTGTAA
TCAAACGATTATGATTCACATATATTACAATTTCCTGATGAACTTTTACG
AAAACGAGAAAATTGTAAAGAGACAGATGAAAGAGCTGCGAAAATCATAC
GGGGGAAAAGACTTGAAGCGGGATAAGTTTATGCGTTTTGTTTGTGCTGA
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000482XLOC_000482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000783-exon-sc0000005-1575043694:337388..337671TCONS_00000783-exon-sc0000005-1575043694:337388..337671Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1575043694:336544..336674TCONS_00000783-exon-sc0000005-1575043694:336544..336674Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1575043694:336017..336142TCONS_00000783-exon-sc0000005-1575043694:336017..336142Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1575043694:334546..334764TCONS_00000783-exon-sc0000005-1575043694:334546..334764Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1575043694:333287..333874TCONS_00000783-exon-sc0000005-1575043694:333287..333874Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1510915933:337388..337671TCONS_00000783-exon-sc0000005-1510915933:337388..337671Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1510915933:336544..336674TCONS_00000783-exon-sc0000005-1510915933:336544..336674Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1510915933:336017..336142TCONS_00000783-exon-sc0000005-1510915933:336017..336142Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1510915933:334546..334764TCONS_00000783-exon-sc0000005-1510915933:334546..334764Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1510915933:333287..333874TCONS_00000783-exon-sc0000005-1510915933:333287..333874Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1491911889:337388..337671TCONS_00000783-exon-sc0000005-1491911889:337388..337671Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1491911889:336544..336674TCONS_00000783-exon-sc0000005-1491911889:336544..336674Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1491911889:336017..336142TCONS_00000783-exon-sc0000005-1491911889:336017..336142Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1491911889:334546..334764TCONS_00000783-exon-sc0000005-1491911889:334546..334764Clytia hemisphaericaexon
TCONS_00000783-exon-sc0000005-1491911889:333287..333874TCONS_00000783-exon-sc0000005-1491911889:333287..333874Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000783-proteinTCONS_00000783-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:333287..337671 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.155741	0.425241	0.14107	0.241526	0.08401	0.0995788	0.240275	0.412395	0.446215	0.130049	0.0315572	0.269678	0.372882	0.193621	0.0353739	0.113885	0.0233828	0.239666	0	0.0346485	0.0301158	0.0440683	0.178569	0.227284	0.802617	0.0895396	0	0	0.103716	0.10567
Blast
[Close]
BLAST of TCONS_00000783 vs. Swiss-Prot (Human)
Match: HMGX3 (HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.686e-28
Identity = 101/371 (27.22%), Postives = 156/371 (42.05%), Query Frame = 2 
Query:   89 MNLEQCLQKIKWHIVERGTFATLKSPFSINLEDIPPLIPPKQRKHEY-NTESQKRSIYLKENDSVEGDVNVLSNLMEEKGLTIDQIEKMPNNELLETAKACSIPTQSK-SQDMLRLDILKLYSSILVGKSSCHKFVKSPGH-TGGFYHVVCAHGTTVCSKFMVLTESVRDAADLYLSLNHPPVLFVCDTPCTFAQHISKRCPELAKEYWGEMNGCFEKPVFDKEPSNGMDVPELVPPEFRSGEGSKGLPGENLGSWHPLT-GKSRRYVCGDRFHNKKDPHVSPLCRYHDIDLCAQSKTVKTSYQESLNNKKNTLRNRSSCNQTIMIHIYYNFLMNFYENEKIVKRQMKELRKS-YGGKDLKRDKFMRFVCA 1186
            +N+E     ++  ++E+  F         +   I P  PP  R     NTE  K      +   V G  + L  L++E    +D+I      +L    + C IP  ++ S+D L   +L LY S+  G     + ++ P H TGG  + VC H     SK++V  ES RD  DL  S  H P ++V D   + A       PEL  + WG   GCF  P    EP   +  PEL+   +     +  +        HP+T   +RR V      N  DP       +H + LC +     T     +++K N +R R         +  YN LM+F  + +IV RQ+ ++ +S   G+ + RD   R   A
Sbjct: 1168 VNVEDFWATMETEVIEQVAFPASIPITKFDASVIAPFFPPLMRGAVVVNTEKDKN----LDVQPVPGSGSALVRLLQEGTCKLDEIGSYSEEKLQHLLRQCGIPFGAEDSKDQLCFSLLALYESVQNGA----RAIRPPRHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPVYVVDMATSVALCADLCYPELTNQMWGRNQGCFSSPT---EPPVSVSCPELLDQHY-----TVDMTETEHSIQHPVTKTATRRIVHAGLQPNPGDPSAG----HHSLALCPELAPYATILASIVDSKPNGVRQRPIAFDNATHYYLYNRLMDFLTSREIVNRQIHDIVQSCQPGEVVIRDTLYRLGVA 1518
The following BLAST results are available for this feature:
BLAST of TCONS_00000783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMGX33.686e-2827.22HMG domain-containing protein 3 OS=Homo sapiens GN... [more]
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