TCONS_00000808 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000808
Unique NameTCONS_00000808
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000808 ID=TCONS_00000808|Name=TCONS_00000808|organism=Clytia hemisphaerica|type=transcript|length=1648bp
CACCTGGATAATCTAGTTAAAGTAAATGGTAGAAGGAGCCTAGGCAAAAC
AAGATTAGCGTACCTATTAAAGAAACCgaaaattaaaatcataaaaGGCT
AATCttgaattttgtaattttcaaagattttctcacacatttttattttc
acctaaGGAAATCACCTGGGATCTGTTTGATTAATTTAGATAAAGTAATT
ATCTCTATAATTGTGGAAGTAAATTTCAAACACAAACAAACATGTCCTTT
TTCAGAGGTGTTGATTAAACCAAATTCGTTAAAGAAGTGATCAATAATTA
TCACTTGATTGATTGATGTTTGAAACATCAGGAGTGCCGCGCGCTTAGCC
GTCCAATGTCGAAACCTTTTGATCTTTCACAAAAGAATTCTCCGAATTGT
CTTCTTTGCTCGACGCTTCAACTGTTGAGctcattttatcaacttttacA
ACAATGGCTGCTGCTCGTCAACGGCAATTCATAAATACATGGGGTCCTGT
TCTTCATGGTAACGATATAATGCCGATAAAACATTTCCTGCAAGGTCAAG
GAGTGATTGCTGTCAATAAAATTTGGCGATTTTGTAACCAACCGATGGCA
ATATCTGCTTATCGTGATGTTCTTGATGGTCACAAATGGAGATGCCCTCG
ACCTTGTCAAAGAACTCTTAGTTTGCGCGATGGatcattttttgcacagt
ggCCGAAGATACGGTTGGGAAGATTGTTTATGGTAATTTATTATTGGTCC
AACAACATAGGTGTTACAAAAATCGAGACGATGACTGATTTGCCTTTAAA
AACTGTTCTTGCTGTATGTCAGTCACTACGTACAGTTTGTGGTAATCATC
TACAGCGGAATCCAATTGTTGTTGGAGGGGGTGGTTTCGTTGTACAGATT
GATGAAACAATGATGCATCACAGACAAAGAAATGGTGTAGGAAGAGCAGC
CCAACAGCCAGTTTGGGTATTTGGAATGGTGGACACCCAATTTGCTCCTG
CCCGCGGGTACATGGAAATAGTACAAAGGAGAGACCGTGCAACATTGACC
GGTGTGATCAATAGAAATTTGGCAGCAAACAGCACCATTCATTCGGACTC
CTGGGCTGCATACAATAACCTGGCACTGTATGTCCCAAACTGTATCCAGC
ATGATCGTGTGAAGGTATCATTTTGTGGACCCAAATACTGGAGCACACAC
ACAGAACATCGAGTCCTACTGGAACAGATTTAAGCATGGAATTAAATCAA
TGAAAGGGGTTAGAAGAGTGGATCTGACCAGTTATTTGAAGGAATTTATA
TGGCGTGATTGGTATGGTTTAGATGCCCCTTTGGACAATATCATCCAAGC
TATCAACATCGACTATCCACTATAGAAGATGATTCATCTCCTTGGCTGCT
TACAAACTTAACCGatcttttgttactttttatttattagtttttgtcAC
ATTACATACTTTATAAGCTTTGATCATATATGTCACATTATCGTACACAT
GTAAATAGCTAAACCTATATAcaattcccggggggggggtactagggcaa
gatggttacggggatgctccgctggtcagggtaccttttttgacctccac
gagtcccaggtagggtcgcaaaaacaccaaaatagaaaaatcagtccc
Run BLAST on NCBI

protein sequence of TCONS_00000808-protein

>TCONS_00000808-protein ID=TCONS_00000808-protein|Name=TCONS_00000808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MAAARQRQFINTWGPVLHGNDIMPIKHFLQGQGVIAVNKIWRFCNQPMAI
SAYRDVLDGHKWRCPRPCQRTLSLRDGSFFAQWPKIRLGRLFMVIYYWSN
NIGVTKIETMTDLPLKTVLAVCQSLRTVCGNHLQRNPIVVGGGGFVVQID
ETMMHHRQRNGVGRAAQQPVWVFGMVDTQFAPARGYMEIVQRRDRATLTG
VINRNLAANSTIHSDSWAAYNNLALYVPNCIQHDRVKVSFCGPKYWSTHT
EHRVLLEQI
Run BLAST on NCBI

transcript from alignment at sc0000005:467528..470040-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000808 ID=TCONS_00000808|Name=TCONS_00000808|organism=Clytia hemisphaerica|type=transcript|length=2513bp|location=Sequence derived from alignment at sc0000005:467528..470040- (Clytia hemisphaerica)
CACCTGGATAATCTAGTTAAAGTAAATGGTAGAAGGAGCCTAGGCAAAAC
AAGATTAGCGTACCTATTAAAGAAACCGAAAATTAAAATCATAAAAGGCT
AATCTTGAATTTTGTAATTTTCAAAGATTTTCTCACACATTTTTATTTTC
ACCTAAGGAAATCACCTGGGATCTGTTTGATTAATTTAGATAAAGTAATT
ATCTCTATAATTGTGGAAGTAAATTTCAAACACAAACAAACATGTCCTTT
TTCAGAGGTGTTGATTAAACCAAATTCGTTAAAGAAGTGATCAATAATTA
TCACTTGATTGATTGATGTTTGAAACATCAGGAGTGCCGCGCGCTTAGCC
GTCCAATGTCGAAACCTTTTGATCTTTCACAAAAGAATTCTCCGAATTGT
CTTCTTTGCTCGACGCTTCAACTGTTGAGCTCATTTTATCAACTTTTACA
ACAATGGCTGCTGCTCGTCAACGGCAATTCATAAATACATGGGGTCCTGT
TCTTCATGGTAACGATATAATGCCGATAAAACATTTCCTGCAAGGTCAAG
GAGTGATTGCTGTCAATAAAATTTGGCGATTTTGTAACCAACCGATGGCA
ATATCTGCTTATCGTGATGTTCTTGATGGTCACAAATGGTAAGAATTTCT
GCAAGGTTGAGTTTTATTTTTCCACTTGTGCTATTTTAAAGATTTGATAG
GAAGGATGGATATTAGGCTTTGGCGGGGTAAAAGGTTGCTATATGATTTG
GCAGATGCACTGGTTTTGACTCACAAAAATTTTCAACTTTATTCTTAACC
AAAAGTATTTTGAAAATTTGTTCTTAGAAAAAGAAATTTAAAAGGTTTCA
CTGTAAATTGTTTGTTTTAATTCATGTCTAGGAGATGCCCTCGACCTTGT
CAAAGAACTCTTAGTTTGCGCGATGGATCATTTTTTGCACAGTGGCCGAA
GATACGGTTGGGAAGATTGTTTATGGTAATTTATTATTGGTCCAACAACA
TAGGTGTTACAAAAATCGAGACGATGACTGATTTGCCTTTAAAAACTGTT
CTTGCTGTATGTCAGTCACTACGTACAGTTTGTGGTAATCATCTACAGCG
GAATCCAATTGTTGTTGGAGGGGGTGGTTTCGTTGTACAGATTGATGAAA
CAATGATGCATCACAGACAAAGAGTGAGTCTAAGATTTTTACCTATACTT
AGTTGCTTCGACAAAAAGTACGCAAGGTCGAGATGAAATTTGTAATGTTT
CTGTATGGAGGAATAGTACTAATAGTAATAATGACAATTGAGTAGTAAAT
CTTCAATTTTTCAACTTAGCCCCTTCTGTACTTTGTTTTCGTTATTTTTT
TTGTTACCTACAGAATGGTGTAGGAAGAGCAGCCCAACAGCCAGTTTGGG
TATTTGGAATGGTGGACACCCAATTTGCTCCTGCCCGCGGGTACATGGAA
ATAGTACAAAGGAGAGACCGTGCAACATTGACCGGTGTGATCAATAGAAA
TTTGGCAGCAAACAGCACCATTCATTCGGACTCCTGGGCTGCATACAATA
ACCTGGCACTGTATGTCCCAAACTGTATCCAGCATGATCGTGTGAAGGTA
TCATTTTGTGGACCCAAATACTGGAGCACACACACAGGTTTGTTATTAGT
TTACGCTTGATTAACGTTTATGGTTCAACTTGATTAAATATAACGCAATA
ATTTGAAGGGAAAAATTTTAAGTCGACGAAGCGGAAAATATCTTTTTTAC
GGTACTTTTTTGAAAATATGTCTTTGAAGCTTAAAGTACATTTTTAACAA
CTCTTCTCTTTTAAGAACATCGAGTCCTACTGGAACAGATTTAAGCATGG
AATTAAATCAATGAAAGGGGTTAGAAGAGTGGATCTGACCAGTTATTTGA
AGGAATTTATATGGCGGTAAGTTGAATTTGCTCAATCTTTTGAACAATTT
GCTAGCATTTATTGTACTAAATAGATGAATAAGTGATGTTATTTGTTTTT
CTTCTCTAGTGATTGGTATGGTTTAGATGCCCCTTTGGACAATATCATCC
AAGCTATCAACATCGACTATCCACTATAGAAGGTAAAAGCAGTAGATTTC
TAACATTCACATTCTTAAATTTTGAGATTGTTTAGAGAATATGGGTTTTT
ACCACGTTTTCCATGTGCAGTATTTGAGAATTATTGCATTTTCCCAAAGC
TCAAATTTTTCTGTTGTAACAGTTTTATTTTCTACATTTTCAGATGATTC
ATCTCCTTGGCTGCTTACAAACTTAACCGATCTTTTGTTACTTTTTATTT
ATTAGTTTTTGTCACATTACATACTTTATAAGCTTTGATCATATATGTCA
CATTATCGTACACATGTAAATAGCTAAACCTATATACAATTCCCGGGGGG
GGGGTACTAGGGCAAGATGGTTACGGGGATGCTCCGCTGGTCAGGGTACC
TTTTTTGACCTCCACGAGTCCCAGGTAGGGTCGCAAAAACACCAAAATAG
AAAAATCAGTCCC

Coding sequence (CDS) from alignment at sc0000005:467528..470040-

>TCONS_00000808 ID=TCONS_00000808|Name=TCONS_00000808|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at sc0000005:467528..470040- (Clytia hemisphaerica)
ATGGCTGCTGCTCGTCAACGGCAATTCATAAATACATGGGGTCCTGTTCT
TCATGGTAACGATATAATGCCGATAAAACATTTCCTGCAAGGTCAAGGAG
TGATTGCTGTCAATAAAATTTGGCGATTTTGTAACCAACCGATGGCAATA
TCTGCTTATCGTGATGTTCTTGATGGTCACAAATGGAGATGCCCTCGACC
TTGTCAAAGAACTCTTAGTTTGCGCGATGGATCATTTTTTGCACAGTGGC
CGAAGATACGGTTGGGAAGATTGTTTATGGTAATTTATTATTGGTCCAAC
AACATAGGTGTTACAAAAATCGAGACGATGACTGATTTGCCTTTAAAAAC
TGTTCTTGCTGTATGTCAGTCACTACGTACAGTTTGTGGTAATCATCTAC
AGCGGAATCCAATTGTTGTTGGAGGGGGTGGTTTCGTTGTACAGATTGAT
GAAACAATGATGCATCACAGACAAAGAAATGGTGTAGGAAGAGCAGCCCA
ACAGCCAGTTTGGGTATTTGGAATGGTGGACACCCAATTTGCTCCTGCCC
GCGGGTACATGGAAATAGTACAAAGGAGAGACCGTGCAACATTGACCGGT
GTGATCAATAGAAATTTGGCAGCAAACAGCACCATTCATTCGGACTCCTG
GGCTGCATACAATAACCTGGCACTGTATGTCCCAAACTGTATCCAGCATG
ATCGTGTGAAGGTATCATTTTGTGGACCCAAATACTGGAGCACACACACA
GAACATCGAGTCCTACTGGAACAGATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000485XLOC_000485Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000808-exon-sc0000005-1575043694:469403..470040TCONS_00000808-exon-sc0000005-1575043694:469403..470040Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1575043694:468868..469159TCONS_00000808-exon-sc0000005-1575043694:468868..469159Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1575043694:468404..468677TCONS_00000808-exon-sc0000005-1575043694:468404..468677Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1575043694:468125..468225TCONS_00000808-exon-sc0000005-1575043694:468125..468225Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1575043694:467959..468031TCONS_00000808-exon-sc0000005-1575043694:467959..468031Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1575043694:467528..467797TCONS_00000808-exon-sc0000005-1575043694:467528..467797Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1510915933:469403..470040TCONS_00000808-exon-sc0000005-1510915933:469403..470040Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1510915933:468868..469159TCONS_00000808-exon-sc0000005-1510915933:468868..469159Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1510915933:468404..468677TCONS_00000808-exon-sc0000005-1510915933:468404..468677Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1510915933:468125..468225TCONS_00000808-exon-sc0000005-1510915933:468125..468225Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1510915933:467959..468031TCONS_00000808-exon-sc0000005-1510915933:467959..468031Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1510915933:467528..467797TCONS_00000808-exon-sc0000005-1510915933:467528..467797Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1491911889:469403..470040TCONS_00000808-exon-sc0000005-1491911889:469403..470040Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1491911889:468868..469159TCONS_00000808-exon-sc0000005-1491911889:468868..469159Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1491911889:468404..468677TCONS_00000808-exon-sc0000005-1491911889:468404..468677Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1491911889:468125..468225TCONS_00000808-exon-sc0000005-1491911889:468125..468225Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1491911889:467959..468031TCONS_00000808-exon-sc0000005-1491911889:467959..468031Clytia hemisphaericaexon
TCONS_00000808-exon-sc0000005-1491911889:467528..467797TCONS_00000808-exon-sc0000005-1491911889:467528..467797Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000808-proteinTCONS_00000808-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:467528..470040 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.89395	0.485459	0.154464	0.16759	3.30902	2.46976	3.49427	3.4455	1.71215	2.9745	1.64327	1.25071	2.83459	2.69693	0.5001	0.0921925	2.72411	1.49519	0.707385	1.51872	2.52409	2.91086	0.317499	0.151042	1.3481	1.19022	0.311175	0.332094	0.167921	0.0855426
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024445Tnp_ISXO2-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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