TCONS_00000831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000831
Unique NameTCONS_00000831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1950

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000831 ID=TCONS_00000831|Name=TCONS_00000831|organism=Clytia hemisphaerica|type=transcript|length=1950bp
AAGTGACTTTGCTTTCCTGTCATATTAAACattctatttttgtttttgga
tattttatagaaacaaaaaaagataataatttTAGACAAAATAATCACAA
TTTCTAATGGATGCATTTGGCACATCTAGTGGAGTACCTCATATTGTGGT
GGAAAAGATCATCGATTTCAAGGTAGACAATGagAGTAGCGAGCCTTCTT
ATCGTATCAAATGGGAAGACACGTGGGTCCCAGAGAATGTAATGCAATGT
ATGTTTCCTGATCTCCTTCaagaatataaaaacaaaatactcCAGAAAGA
TATCATTATGGATGCTCCAGAACAAGTCCAATCCCTGCCTGGTGAGGAAG
TGCAAGTAGCAATGCAAGATTCTATGGATTCATTTGCAAATGAGAATAAT
AGCATTATATTTAACACAGAGAATTCAAGACTTTTAAACGCACTCGATTT
GATCGTTTTACAGACTCaaattgttgaaaagatacCCGATAGCCTAGAGA
TACTTGACTTAAATTCCACTGATCTAGAATTGTGTCAATTGATAAAGTGG
CGAGGAAGCCTGTCTTCCACAGATCTACCTCAATCATTAAATACAAGATC
TAAAAGAACTAGAAAGCCATCTATGAAGATGTCAGAATGTGATTTTAAAA
AACGTCGGGTCGGTAGTAAACGTTCAAAAACATGCACTGctaacaaaaca
aacaaaaagaacaGCCAAGAAGTAGATTGTCCCATTTGTGGGAGAGTTAT
CCGTAGTAAACGTTTAGATTCACACATGTTACTTCATTCTAAGGATAGCA
AATTCTCTTGTGAGACTTGTGGCAAAGTCTGTGGAACCAGGTCAGATTTG
AGGAATCACATGCTTATTCATGGTGAATATAATTATGAGTGTCCATATTG
TGACCAGAAGTTCAAACAACCAGCACCTTACCGTGTCCACATGAAAATGC
ACACAGTTGAGAATAATTGGATGTGTGATGTTTGTTTCGAAACATTCAAA
TTTCAAGGAGAGTTGAAACAGCACTGTATGTCTAAACATAAAGATATTAG
CAAAGATCCTCAAAGATGTTGTGTTTGTAAAGAACTTTTGAAATCACCAA
TTTCTGTCTATAAACACAGTGTTGGGCATAGTGGAATCCGTAATTTTGTA
TGTGGTATTTGTTCTAAAAGATTCAAGCATAAAAGTCACTTAGAGAAACA
CTTGAATATGCATGAAAGAATGGAAAAGGAGAAAACAGAACCGCCAATGG
GAGGTCCTTTCAATTGTCAAATTTGTGGTCGTGAATTCCTTCAACTTCAA
TCGATGAAAATCCATCTCGGAAAACACAAAGCTAACCAAGAAACCAACCT
TGAAGAGTATCTGCAGAAAAAAGCACAACGACTAGCAGCATCTAAAGAGA
AAAATCGACAAAATGCCAGGATATATAAAGCTaaatacaaagaaaagaaa
GCTACCAAAATGAGAATTTTACAAGACCTTGGTATCGAGCCTGATAATCC
AATTGCGAAAACGGTTGATTTGACTGGTATTATAGACAATGAGGGAGGAA
CTGCAGAGCTGAAGATTGTGGAGGAAGCTGCAGATCAGCCAGAAGGAGAG
CAAGCtgttattagtgtcaataaacaAGTAGAACCAATTACTGTTGGTAA
GAATGTCGTATTAGGATCAGCACTTAATGAGACGTTGGAGTATGTTGTGG
CGACAGATTCAACCTCAGTCGTCGTTGGAGATGATGTAGCTGGGATCAGT
GTCGAAAATATGGCTCCTGGTTTTGCATTGCTTAGTTTCCTTAAACAATC
CAAAACTGACTAATTCCGTATTTTGTAGTTAGATTTTTCGCTACTGTTAT
ATTCAAATTGaagaatttttcttgtaactATTTACATTCTTAATAtatta
tatcatttttttcagaattaggataatttgaaatttttgaaagattgcCA
Run BLAST on NCBI

protein sequence of TCONS_00000831-protein

>TCONS_00000831-protein ID=TCONS_00000831-protein|Name=TCONS_00000831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=568bp
MDAFGTSSGVPHIVVEKIIDFKVDNESSEPSYRIKWEDTWVPENVMQCMF
PDLLQEYKNKILQKDIIMDAPEQVQSLPGEEVQVAMQDSMDSFANENNSI
IFNTENSRLLNALDLIVLQTQIVEKIPDSLEILDLNSTDLELCQLIKWRG
SLSSTDLPQSLNTRSKRTRKPSMKMSECDFKKRRVGSKRSKTCTANKTNK
KNSQEVDCPICGRVIRSKRLDSHMLLHSKDSKFSCETCGKVCGTRSDLRN
HMLIHGEYNYECPYCDQKFKQPAPYRVHMKMHTVENNWMCDVCFETFKFQ
GELKQHCMSKHKDISKDPQRCCVCKELLKSPISVYKHSVGHSGIRNFVCG
ICSKRFKHKSHLEKHLNMHERMEKEKTEPPMGGPFNCQICGREFLQLQSM
KIHLGKHKANQETNLEEYLQKKAQRLAASKEKNRQNARIYKAKYKEKKAT
KMRILQDLGIEPDNPIAKTVDLTGIIDNEGGTAELKIVEEAADQPEGEQA
VISVNKQVEPITVGKNVVLGSALNETLEYVVATDSTSVVVGDDVAGISVE
NMAPGFALLSFLKQSKTD
Run BLAST on NCBI

transcript from alignment at sc0000005:767102..769562-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000831 ID=TCONS_00000831|Name=TCONS_00000831|organism=Clytia hemisphaerica|type=transcript|length=2461bp|location=Sequence derived from alignment at sc0000005:767102..769562- (Clytia hemisphaerica)
AAGTGACTTTGCTTTCCTGTCATATTAAACATTCTATTTTTGTTTTTGGA
TATTTTATAGAAACAAAAAAAGATAATAATTTTAGACAAAATAATCACAA
TTTCTAATGGATGCATTTGGCACATCTAGTGGAGTACCTCATATTGTGGT
GGAAAAGATCATCGATTTCAAGGTAGACAATGAGGTAAGTTTTTTTTATA
GTAACATCACCAATTCTATTTGGACCAATAGAATATCTTCTTCAGTAACA
CTATTCAAACACCTAGGTAATTTTTATATGTAATACCTCCTTAAATTTTA
CTATTTCTTTGTCTAATATCATGAAAGCTTCTCAAAAAGTTACAATATTC
TCCTTAAAGGTGTTTTAAGCGAATAGATTTGTATTTTCTTTGATATATGT
TTTCCCTTTTCAACTTCAGAGTAGCGAGCCTTCTTATCGTATCAAATGGG
AAGACACGTGGGTCCCAGAGAATGTAATGCAATGTATGTTTCCTGATCTC
CTTCAAGAATATAAAAACAAAATACTCCAGAAAGATATCATTATGGATGC
TCCAGAACAAGTCCAATCCCTGCCTGGTGAGGAAGTGCAAGTAGCAATGC
AAGATTCTATGGATTCATTTGCAAATGAGAATAATAGCATTATATTTAAC
ACAGAGAATTCAAGACTTTTAAACGCACTCGATTTGATCGTTTTACAGAC
TCAAATTGTTGAAAAGATACCCGATAGCCTAGAGATACTTGACTTAAATT
CCACTGATCTAGAATTGTGTCAATTGATAAAGTGGCGAGGAAGCCTGTCT
TCCACAGATCTACCTCAATCATTAAATACAAGATCTAAAAGAACTAGAAA
GCCATCTATGAAGATGTCAGAATGTGATTTTAAAAAACGTCGGGTCGGTA
GTAAACGTTCAAAAACATGCACTGCTAACAAAACAAACAAAAAGAACAGC
CAAGAAGTAGATTGTCCCATTTGTGGGAGAGTTATCCGTAGTAAACGTTT
AGATTCACACATGTTACTTCATTCTAAGGATAGCAAATTCTCTTGTGAGA
CTTGTGGCAAAGTCTGTGGAACCAGGTCAGATTTGAGGAATCACATGCTT
ATTCATGGTGAATATAATTATGAGTGTCCATATTGTGACCAGAAGTTCAA
ACAACCAGCACCTTACCGTGTCCACATGAAAATGCACACAGTTGAGAATA
ATTGGATGTGTGATGTTTGTTTCGAAACATTCAAATTTCAAGGAGAGTTG
AAACAGCACTGTATGTCTAAACATAAAGATATTAGCAAAGATCCTCAAAG
ATGTTGTGTTTGTAAAGAACTTTTGAAATCACCAATTTCTGTCTATAAAC
ACAGTGTTGGGCATAGTGGAATCCGTAATTTTGTATGTGGTATTTGTTCT
AAAAGATTCAAGCATAAAAGTCACTTAGAGGTAATTCTGATAGCTAATTA
ATAGTTAGATAGATAGATAGTTAATTGAGAATCTATTTTACAATCAAATG
GTCGAGTCAGCTTTTTCAAAAATGATGATCTTTCCTTTTTTGATTTTTTA
CATTATGTAAAGTAGTGCGATAACTAAGGGGATGAGATTGATTTTATGGT
TTCTTACTTGAAAGATTTACTCCATTTTTGTTGTTGATCGAAAGTTCCTC
AATTACAAGTTTGTATTTTGAAGTACTAAAATTGTCATATTCCCTTTATT
TTCTAGAAACACTTGAATATGCATGAAAGAATGGAAAAGGAGAAAACAGA
ACCGCCAATGGGAGGTCCTTTCAATTGTCAAATTTGTGGTCGTGAATTCC
TTCAACTTCAATCGATGAAAATCCATCTCGGAAAACACAAAGCTAACCAA
GAAACCAACCTTGAAGAGTATCTGCAGAAAAAAGCACAACGACTAGCAGC
ATCTAAAGAGAAAAATCGACAAAATGCCAGGATATATAAAGCTAAATACA
AAGAAAAGAAAGCTACCAAAATGAGAATTTTACAAGACCTTGGTATCGAG
CCTGATAATCCAATTGCGAAAACGGTTGATTTGACTGGTATTATAGACAA
TGAGGGAGGAACTGCAGAGCTGAAGATTGTGGAGGAAGCTGCAGATCAGC
CAGAAGGAGAGCAAGCTGTTATTAGTGTCAATAAACAAGTAGAACCAATT
ACTGTTGGTAAGAATGTCGTATTAGGATCAGCACTTAATGAGACGTTGGA
GTATGTTGTGGCGACAGATTCAACCTCAGTCGTCGTTGGAGATGATGTAG
CTGGGATCAGTGTCGAAAATATGGCTCCTGGTTTTGCATTGCTTAGTTTC
CTTAAACAATCCAAAACTGACTAATTCCGTATTTTGTAGTTAGATTTTTC
GCTACTGTTATATTCAAATTGAAGAATTTTTCTTGTAACTATTTACATTC
TTAATATATTATATCATTTTTTTCAGAATTAGGATAATTTGAAATTTTTG
AAAGATTGCCA

Coding sequence (CDS) from alignment at sc0000005:767102..769562-

>TCONS_00000831 ID=TCONS_00000831|Name=TCONS_00000831|organism=Clytia hemisphaerica|type=CDS|length=1707bp|location=Sequence derived from alignment at sc0000005:767102..769562- (Clytia hemisphaerica)
ATGGATGCATTTGGCACATCTAGTGGAGTACCTCATATTGTGGTGGAAAA
GATCATCGATTTCAAGGTAGACAATGAGAGTAGCGAGCCTTCTTATCGTA
TCAAATGGGAAGACACGTGGGTCCCAGAGAATGTAATGCAATGTATGTTT
CCTGATCTCCTTCAAGAATATAAAAACAAAATACTCCAGAAAGATATCAT
TATGGATGCTCCAGAACAAGTCCAATCCCTGCCTGGTGAGGAAGTGCAAG
TAGCAATGCAAGATTCTATGGATTCATTTGCAAATGAGAATAATAGCATT
ATATTTAACACAGAGAATTCAAGACTTTTAAACGCACTCGATTTGATCGT
TTTACAGACTCAAATTGTTGAAAAGATACCCGATAGCCTAGAGATACTTG
ACTTAAATTCCACTGATCTAGAATTGTGTCAATTGATAAAGTGGCGAGGA
AGCCTGTCTTCCACAGATCTACCTCAATCATTAAATACAAGATCTAAAAG
AACTAGAAAGCCATCTATGAAGATGTCAGAATGTGATTTTAAAAAACGTC
GGGTCGGTAGTAAACGTTCAAAAACATGCACTGCTAACAAAACAAACAAA
AAGAACAGCCAAGAAGTAGATTGTCCCATTTGTGGGAGAGTTATCCGTAG
TAAACGTTTAGATTCACACATGTTACTTCATTCTAAGGATAGCAAATTCT
CTTGTGAGACTTGTGGCAAAGTCTGTGGAACCAGGTCAGATTTGAGGAAT
CACATGCTTATTCATGGTGAATATAATTATGAGTGTCCATATTGTGACCA
GAAGTTCAAACAACCAGCACCTTACCGTGTCCACATGAAAATGCACACAG
TTGAGAATAATTGGATGTGTGATGTTTGTTTCGAAACATTCAAATTTCAA
GGAGAGTTGAAACAGCACTGTATGTCTAAACATAAAGATATTAGCAAAGA
TCCTCAAAGATGTTGTGTTTGTAAAGAACTTTTGAAATCACCAATTTCTG
TCTATAAACACAGTGTTGGGCATAGTGGAATCCGTAATTTTGTATGTGGT
ATTTGTTCTAAAAGATTCAAGCATAAAAGTCACTTAGAGAAACACTTGAA
TATGCATGAAAGAATGGAAAAGGAGAAAACAGAACCGCCAATGGGAGGTC
CTTTCAATTGTCAAATTTGTGGTCGTGAATTCCTTCAACTTCAATCGATG
AAAATCCATCTCGGAAAACACAAAGCTAACCAAGAAACCAACCTTGAAGA
GTATCTGCAGAAAAAAGCACAACGACTAGCAGCATCTAAAGAGAAAAATC
GACAAAATGCCAGGATATATAAAGCTAAATACAAAGAAAAGAAAGCTACC
AAAATGAGAATTTTACAAGACCTTGGTATCGAGCCTGATAATCCAATTGC
GAAAACGGTTGATTTGACTGGTATTATAGACAATGAGGGAGGAACTGCAG
AGCTGAAGATTGTGGAGGAAGCTGCAGATCAGCCAGAAGGAGAGCAAGCT
GTTATTAGTGTCAATAAACAAGTAGAACCAATTACTGTTGGTAAGAATGT
CGTATTAGGATCAGCACTTAATGAGACGTTGGAGTATGTTGTGGCGACAG
ATTCAACCTCAGTCGTCGTTGGAGATGATGTAGCTGGGATCAGTGTCGAA
AATATGGCTCCTGGTTTTGCATTGCTTAGTTTCCTTAAACAATCCAAAAC
TGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000499XLOC_000499Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000831-proteinTCONS_00000831-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000831-exon-sc0000005-1575043694:769379..769562TCONS_00000831-exon-sc0000005-1575043694:769379..769562Clytia hemisphaericaexon
TCONS_00000831-exon-sc0000005-1575043694:768133..769143TCONS_00000831-exon-sc0000005-1575043694:768133..769143Clytia hemisphaericaexon
TCONS_00000831-exon-sc0000005-1575043694:767102..767856TCONS_00000831-exon-sc0000005-1575043694:767102..767856Clytia hemisphaericaexon
TCONS_00000831-exon-sc0000005-1510915933:769379..769562TCONS_00000831-exon-sc0000005-1510915933:769379..769562Clytia hemisphaericaexon
TCONS_00000831-exon-sc0000005-1510915933:768133..769143TCONS_00000831-exon-sc0000005-1510915933:768133..769143Clytia hemisphaericaexon
TCONS_00000831-exon-sc0000005-1510915933:767102..767856TCONS_00000831-exon-sc0000005-1510915933:767102..767856Clytia hemisphaericaexon
TCONS_00000831-exon-sc0000005-1491911889:769379..769562TCONS_00000831-exon-sc0000005-1491911889:769379..769562Clytia hemisphaericaexon
TCONS_00000831-exon-sc0000005-1491911889:768133..769143TCONS_00000831-exon-sc0000005-1491911889:768133..769143Clytia hemisphaericaexon
TCONS_00000831-exon-sc0000005-1491911889:767102..767856TCONS_00000831-exon-sc0000005-1491911889:767102..767856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:767102..769562 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
43.1806	36.6829	17.6968	14.1533	22.7539	15.57	13.8592	15.6973	9.27287	9.25257	14.266	6.31075	8.47039	6.8543	8.72467	11.4863	13.5842	12.9199	4.87396	5.68961	8.33412	6.11205	44.3697	33.711	12.1208	13.2193	9.66793	8.61811	25.8747	30.1645
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR023780Chromo_domain
IPR013083Znf_RING/FYVE/PHD
IPR016197Chromodomain-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00000831 vs. Swiss-Prot (Human)
Match: ZF69B (Zinc finger protein ZFP69B OS=Homo sapiens GN=ZFP69B PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 2.567e-23
Identity = 63/207 (30.43%), Postives = 100/207 (48.31%), Query Frame = 2 
Query:  722 VDCPICGRVIRSK-RLDSHMLLHSKDSKFSCETCGKVCGTRSDLRNHMLIH-GEYNYECPYCDQKFKQPAPYRVHMKMHTVENNWMCDVCFETFKFQGELKQHCMSKHKDISKDPQRCCVCKELLKSPISVYKHSVGHSGIRNFVCGICSKRFKHKSHLEKHLNMH--ERMEKEKTEPPMGGPFNCQICGREFLQLQSMKIHLGKHK 1330
             +C IC ++ +    L  HM +H+ +  F C+ CGK     S L  H  IH GE  YEC  C + F+ P+    H+++HT E  + C VC + F     L QH  +    + + P  C  C +       + +H + H+G++ ++C +CSK F H ++L +H   H  ER            P+ C+ CG+ F    S +IHL  H+
Sbjct:  279 FECNICEKIFKQLIHLTEHMRIHTGEKPFRCKECGKAFSQSSSLIPHQRIHTGEKPYECKECGKTFRHPSSLTQHVRIHTGEKPYECRVCEKAFSQSIGLIQHLRT---HVREKPFTCKDCGKAFFQIRHLRQHEIIHTGVKPYICNVCSKTFSHSTYLTQHQRTHTGER------------PYKCKECGKAF----SQRIHLSIHQ 466

HSP 2 Score: 85.1149 bits (209), Expect = 3.525e-17
Identity = 65/238 (27.31%), Postives = 98/238 (41.18%), Query Frame = 2 
Query:  728 CPICGRVI-RSKRLDSHMLLHSKDSKFSCETCGKVCGTRSDLRNHMLIH-GEYNYECPYCDQKFKQP-------------APY---------------RVHMKMHTVENNWMCDVCFETFKFQGELKQHCMSKHKDISKDPQRCCVCKELLKSPISVYKHSVGHSGIRNFVCGICSKRFKHKSHLEKHLNMHERMEKEKTEPPMGGPFNCQICGREFLQLQSMKIHLGKHKANQETNL 1351
            C  CG+   +S  L  H  +H+ +  + C+ CGK     S L  H+ IH GE  YEC  C++ F Q               P+               R H  +HT    ++C+VC +TF     L QH   +     + P +C  C +     I +  H   H+G++ + C  C K F+H S   KH  +H     EK       P++C  CG+ F    S+  H   H  N  +N+
Sbjct:  309 CKECGKAFSQSSSLIPHQRIHTGEKPYECKECGKTFRHPSSLTQHVRIHTGEKPYECRVCEKAFSQSIGLIQHLRTHVREKPFTCKDCGKAFFQIRHLRQHEIIHTGVKPYICNVCSKTFSHSTYLTQH---QRTHTGERPYKCKECGKAFSQRIHLSIHQRVHTGVKPYECSHCGKAFRHDSSFAKHQRIH---TGEK-------PYDCNECGKAFSCSSSLIRHCKTHLRNTFSNV 533
The following BLAST results are available for this feature:
BLAST of TCONS_00000831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZF69B2.567e-2330.43Zinc finger protein ZFP69B OS=Homo sapiens GN=ZFP6... [more]
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