TCONS_00000835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000835
Unique NameTCONS_00000835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000835 ID=TCONS_00000835|Name=TCONS_00000835|organism=Clytia hemisphaerica|type=transcript|length=3407bp
GAACTTGTGTAGAACCTTTAAGCAAACATTTGATGTTATCAGTAAGCTTT
ATGGGGAAACAATGAAGAAATCAACAATCTTGGCAGTGTTTAAAGTTATA
TTAGTTTTGGAAGAAACACTAGGGACAGAACCAGATGACAGATCAAATGC
CGGTTCACCATATGTTAAAGTAAGATTCACTTTAGATGTTTCCAATTACA
ACCATGGTAAATTCAATGGACGTCTATCTCTCATTCGTCAAGTTAGAGAT
GAGATGTTCCGGGTGATGCAGGACGTTGACCGACAtgagaaaattgaatt
tgatatCAAACAGCTAAATCTTAAAGAGTTGAAAATGGATTTTCGAATGT
TACAAGAAAATGCAACAGTAGAGAAGTACCAAGCAGTCAAAGACAGATAC
CAACAAATTTTGAGCTCAATAGATACCATTTCTAAATATACGTTGAAAGA
AAGGTCAACTGAAAACTTTGGATATTGCCCTGGTGTTACTGAAGGAAAGG
AatcattcaaagggcgatatatcTTCCCAAACTTAATTGTTGGAAGTCAA
ATCATGTTTCGCTGTGCTTAtggaaagtcttcattttcaagATCTTGTTA
TCTGGGAGCAAATGGTCCCGTGTGGTCCCCGCTTGATTTGAAAAAGTGCG
ATGCGAAGAGTGCAACTACTCAATCCTTACTTGAATTGAATCAGACATTG
GCAAAATGTGGAGTGGGTAAAGATTGCAGGTTGACTGCATTTAACACATC
TGAACAACTGGATAGAGATATTGCAAGTGCGAATAATCTAACAACTGAGG
AAGACATCAACTTGGTGACTGAAATTTTGGGAAATATTGTCAATCAAGCG
AATCAACAAAATCAGACAAACGAAGACATGAAAAAGATCATGAATAATAC
AGTCTCAGTCGTTGAGAAAATCTTAGAAGCATCAGATAACATCAAAATAA
CAGACCAAGAAACTTCACGTCAAAACAGTCAATCAATGCTTCAAAGTTTT
GAGAAACTTGCTGAGAAAACATCGAAAGGATTGAAACCTAACGAGTCTAC
tagttttgaaagtcaaaaCATCGCTGTTGTCACTTCGAATCCATCTTCAG
ACTTGGATTTAGAGAATTGTCAAACTTTGAATTGAAAGGCAACGTCTTGG
GTGCTTCTTGTGGCAGCCAGAAGATAGAGAATTTAAGAAGACCAgttgtt
ttgaaatttccaagaCAACCTGTGGTTGCAGTAATTAGCGAAGACGAAAA
AGAAGAGGAAATACCTTTAAATCAATGCGGATATTGGGATACATTGACAG
GTTCTTGGTCTACCAGAGGAGTTTCCACATCATTAACAAATGATCAAAGC
ATTGTCGAATGTTCTACTGATCATTTGACAAATTTCGCGATGCTATTGGA
TGTTTCCCAGACCGGAAGCAATCCGTTGGCTCTTCAAATTATCACGTGGA
TAGGATGTGGAATCTCATTGGCTGGTTTATTGTTGACAATTGTCTCCTTT
GCGATTTTCCGGAAAGTTCGAAGGAAATTGGTACCCAAACTACTCATATG
TCTAAGCACATCTTTAGCAATGACGTTGATCATATTTCTGGCGGCTGCAG
AGAAAACAGAACCTCGCTATCTATGTCAAACAACTGCTGGATTAATACAA
TATTTCCTGTTATCCATGTTTTGTTGGTCCTCAGTGGAAGCTTTCCATTT
GTATTATTCGTTCGTTAAAATCTTTGCTACTGGTAGTGATAGCAGATTCT
TCAGAAAGGCTTTACTTTTTGCATATGGATCGCCAGCAGTAATTGTCGCA
GTTACAGCTTCCTTGAGACCTGAAAATTATGGAAATGACAAATTttgTGT
GGTGAATGGGCTACCATTTTTCTTGTCGATGCTACTTCCAATCTGTTTGA
TTCTCAGTGCTAATATGGTGGTTCTCGTATTAGTTGTCAGGGCAATAACA
AAATCGGGTACAATGGCAgccaataaaaataaacaagatGGTAACGAAGC
tatgaaaaaagccaaaattgcATTTGCTTGTTCAGTCTTATTGGGATTGA
CTTATATTTTTGGTGTTCTGGCCGTTGGTGCCCTGACGTCTTTTTTCCAA
TGGTTGTTTTGCATTTTCAATTCCCTTCAAGGATTCTTTATCTTCTTCTT
CTACACTTTCAATAACCAAGAATTGAAAACAGAATGGATGGATTTCTTGA
ATAtccaaaagaaacaaaacattgGATCAAGTACTGGGGCACCAACTATT
CCAATGCGATCAAAGATATCCACTGCTACTCTTGATGGACGTTGAACACA
TTAAGCTAGAACTGAAGAAAAAATTCTAATGCAACAAGCATTGTTATGAG
CTTAAAGAAAGAGAACTGGAAATTATTCGGGGTCACACAGCTTTCAACTC
TCCTACAGCTTAGTCAAAGTCACCTGATGCACTTTTAACTATATACCTCC
ATTTTTATCTTTATAATAGTAACCGTACGTGTCTGAAACCTCTCTCTGTA
GCATCTTGATTTTCGATAGCAATTCTAAGTCTTTTTCCGGGGCTGATGTT
TAATTTTTGTTGTAACAGCATTgacaattttcatgaaaaagaatttaaat
tagttcaCCCTGATTAGTGTCCAAgaataacttgaaaaagaaaaatggag
aaTTGAAGTCATAGAAGCATTCCCTCAGCCCCCCCTTGAGTGATTCTTAC
ATTTTAACAATTATAAATCATTCAATTTTTGCTGGGATAAAACAATTCTC
GAAAAACTCTTCATAGAATTAATTATTCAGCGGTCACTCATTCCGCCAGC
ATTGGCTCGATGGCTCCTATATCGATGGTAGTGTGTGAATTTGCTACTTC
GAGGAATCAACTAATGTTTAATAAGGCAATGCAAGTAGTGAGGTCACTTT
CGTTTACACCGTCTACTAGCTTCCCTTGCAATACAGAAACAATGCCATCG
ATTAGGGCCGCCATACAGACACCTCAATGTTTGCATTGTATTACAGATTA
CTCAAAAACGGAAACTACTAAAGTGCCTTGAAATTGTATATTATTtcact
tttgccaaaaaattcACTTGTgctttttgaggaaatttccaGACGGTGAT
AGAAAGTTTTGTGATTCTACAAACGcatttattgacaattaaagtTTCCC
TTGGGAAATGCCTTTAAATCGGCTTTAAATCTAAGGATGAGTTTACAACC
GTGAAAGagggtgtttttccactgacGTCTTAATAAAACGCTGAATAGCC
CAAAACTATTCATATTATGGGGAGGAAAAGAGATAATTACACTTggttta
tgttttcttttcgaaaataaatttcatttccCACAGCAAAACAagagaaa
atcgaaaaatcttttattttttttcttatcttatattttttgaaatgaaa
aagctCT
Run BLAST on NCBI

protein sequence of TCONS_00000835-protein

>TCONS_00000835-protein ID=TCONS_00000835-protein|Name=TCONS_00000835-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
NLCRTFKQTFDVISKLYGETMKKSTILAVFKVILVLEETLGTEPDDRSNA
GSPYVKVRFTLDVSNYNHGKFNGRLSLIRQVRDEMFRVMQDVDRHEKIEF
DIKQLNLKELKMDFRMLQENATVEKYQAVKDRYQQILSSIDTISKYTLKE
RSTENFGYCPGVTEGKESFKGRYIFPNLIVGSQIMFRCAYGKSSFSRSCY
LGANGPVWSPLDLKKCDAKSATTQSLLELNQTLAKCGVGKDCRLTAFNTS
EQLDRDIASANNLTTEEDINLVTEILGNIVNQANQQNQTNEDMKKIMNNT
VSVVEKILEASDNIKITDQETSRQNSQSMLQSFEKLAEKTSKGLKPNEST
SFESQNIAVVTSNPSSDLDLENCQTLN
Run BLAST on NCBI

transcript from alignment at sc0000005:837079..846764-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000835 ID=TCONS_00000835|Name=TCONS_00000835|organism=Clytia hemisphaerica|type=transcript|length=9686bp|location=Sequence derived from alignment at sc0000005:837079..846764- (Clytia hemisphaerica)
GAACTTGTGTAGAACCTTTAAGCAAACATTTGATGTTATCAGTAAGCTTT
ATGGGGAAACAATGAAGAAATCAACAATCTTGGCAGTGTTTAAAGTTATA
TTAGTTTTGGAAGAAACACTAGGGACAGAACCAGGTAAGAGCACATAAAT
ATATGGACAGCACTGCAATACAGCATAAAAGACCCGATGAGTTCCCCTTT
CATCTCGAAAATTAAAAAAATATCATCCTGCTATCGAAAATACCCTCAAA
AGCCCATCCCTATAACAGTCTCCAATATCTCCAATCATCAAAACACCCCT
GTGTCACATACCCGCTGGGACCCAAGCCCCACCGGAAAATCTGGCAAAAA
TTTCTTCCCCAGTAGAAAAATACCCTAGCATTTTAGCCCCACTGGTAAAT
TGACTTATATTTCATCCCCACTCGAAATTAAATGTTTAAAAATTGCACTC
CAAAGCAATTCCCACTGGATTTTTTAACCTTTGAGTAAGTGAAATTTCTA
TCTCCATTGGGATTTCAATAGGAATTTTTATCCCCACTGAGGAAAAAAGC
TCCACCGGGGCTGTACGAGACAGGGGTGTATCAAAAACAAGAGATTTGAG
ATCATAGCTCCTTGATTTTATCTTCAATACAATACGTTCTCACTCGTTTC
CTGTTTTTTTTTTTAAGAAAGATTATATATTTAAGCGCTTACATATATAA
TCTTGCTTAAAAAAACAACAAGAAACGAGTGAGAAGGTATTGTATTGTGC
TAGCACGTCAAATTAATTTTTATCAGTGATATATATCTCCTATGGACAGA
TTGAGTTAAAAGTAAAACCTTTATGCCATATACCCAAGAAGAAAAAAACT
TTATTACTAGAAGGTTTATGAACGATTATTCTTTCATCATTTCAGATGAC
AGATCAAATGCCGGTTCACCATATGTTAAAGTAAGATTCACTTTAGATGT
TTCCAATTACAACCATGGTAAATTCAATGGACGTCTATCTCTCATTCGTC
AAGTTAGAGATGAGGTATGTAAACAATTTACCACGCGGTATAAAAGTCAA
ATTCGAACTCAGTTAAGGGACTTTCTTTATACTTTTTATAGTGTTCAAGA
AACATTGTATCACGTCCATAAGTAAAATCGAAAAGTGATGCATGTGGCTC
TGGCTACGAGATTGGCTAAAAATTTTAACATAACGTTTTATAATAATGAG
TGTGTTCGATCGGTCACTTGGAAGACTGTAATATTGGCTTAAACTACTAA
CTATCTTAGAAGAAAGCTCCTATTGGAGGTAAATTTCGTGGAAGTGTTTT
ACGGCTGAAGTAAGTTTACGGCGGTAGTTTAACGGCACGTAATTTTATTT
GATGAGATTGCAATTATTGGCTGTAAAACTGTGCGCATATTATTGTGTTT
ATTATTCTCAGTCCGAATCTAATCCTACAACTTTCATACCAGATGTTCCG
GGTGATGCAGGACGTTGACCGACATGAGAAAATTGAATTTGATATCAAAC
AGTAAGCTATCCTTTATCGACTGGCCGGAGAATATTTCCTTACTCTACCC
TAATATTTGAGATAGATTTGGTAATGAATCATATCAAAACATTATGAACA
ACGGACCTTTTTGTTACCCCTCTTGGTCCTTAGTACTTGTCCTGTACCTG
TGCCCGGTACAATTAGATGAAAAGAATAAACACAATTAAAATTCAATTCC
AATCACGTTGAGTTTCTATCCCTACTTTGCTAGGAGATTGTGAATCCCGC
AAACTGTATTTACGATTTAAATCCTGCACCAATATAAAACTGGATATTCC
ATCCCTGTTAACAAGCTGAGAATGATTCATGTGAATCATTAGCTAGTCGG
GTCACCAAGATTAAGACGGATAAACGTATAAAAAATTACATACGCTTATT
ATTAGTTTTACAAGATTTTACTCTGTATAGGCTAAATCTTAAAGAGTTGA
AAATGGATTTTCGAATGTTACAAGAAAATGCAACAGTAGAGAAGTACCAA
GCAGTCAAAGACAGATACCAACAAATTTTGAGCTCAATAGATACCATTTC
TAAATATACGTTGAAAGAAAGGTCAACTGAAAACTTTGGTAAGTGAAAAT
ACCATGAACATATAAACGACTGGACATCCATCTCCTTTGTTTTTTTGTAG
AAAGGGCTGCCAGCTTCGTTGCCGCCTCGTTAAAAGCATAAAATGAAACA
ATAGATTTTGATGATATATCACTTGGGAATACCTTGCTAACAACGTCAAA
ACTTCGACAAAAGTCTCTGTTGTTCTACCCTTCTCAAGTCGTTTATCTAT
ATCATAACAAAGATAACAGAGGCAAAATCATCGTCAGCTTGTCAAAACTC
CGACTAATATTTCTAAATTTTGACTTAAAAGTGTCTAATAATTTTAGAGA
GTGTCACATTCTAATTTTGATATTCTTATTACACAGGCTCTCAACTGTGG
CAAGCTATTTTTTTCAAGTTATAAAAAGAATTATTGAAGTGACAAAAGGG
ATTCAAAAGTATACACGCAGTTGAAATTCTACATTTCAGAGTTGAAAATG
TTGATAAAATATATTGCAAACTTGTAAAAAAATTCGAAAATAATTTTTTT
GTACATTAGGAGTAATGTTCAAGCTCTATCAATTATTTTACCTAAATAAT
TCATAGAAATAAAATTATGACGGAATACTGTCAGATTTTTCATACCAATT
TTGAAATACAGGCGGCAACGAAGCTCGCTTTAAAGAGACAATAAAAGATA
GGCGTCCAGTCGTTTATATGTTCATGAAAATACTAAGCATTTTAATTTGG
AACTAAGGGGAAGGCTTCAAGCCATAGGAATATTACATGGGCAGTTGAAG
ATTCTTCTCATACACATCTTCTTTCCTGAGTATCCCTTCATTACATTAAA
TACGTTTTACGGATAGCCGAAGTATCACAAATTCTTAGGAATAGTTGTGA
CGCAAGAAGTAGCTAAAGTATCCTCATCTCACATTTCTACATATGATAAG
AACATCCCTGGTGGGAAATCCTACCAATCGAAAAAATTAGTCAGAAAATC
ATTTCCACTGACCATAATCTAATCCCATCGGGAACATGAGCTGAAATTTT
GAGGATCTCCATTGGAATACGGAGCTGTGAATAATAAAGCTCTTTGACTT
GAGAATTCTAACTAAGTCAGGGGTGTGACGCTGCAATAATCAGTTCCGTC
CCGATGGACGTTAGCAAATCTTTGCTATAATGAAGAAACTGAAATATTCT
AACTTTTTTCTTATTGATATTTTCAACAATCTCACCAAAGGATATTGCCC
TGGTGTTACTGAAGGAAAGGAATCATTCAAAGGGCGATATATCTTCCCAA
ACTTAATTGTTGGAAGTCAAATCATGTTTCGCTGTGCTTATGGAAAGTCT
TCATTTTCAAGATCTTGTTATCTGGGAGCAAATGGTCCCGTGTGGTCCCC
GCTTGATTTGAAAAAGTGCGATGCGAAGAGTGCAACTACTCAATCCTTAC
TTGAATTGAATCAGGTACGACTTTGCACTACTTGGTAGCTTATTGATCTA
GTTTGATCGTTCTGTAATAAAGAGTAATCAAGAAATGAACAGCATAACTT
ATTTGCATAAACTTTAAAACAAGTCTATCCTGGTGATTATCGAAACTTTA
TGGTAATTGCTTCGGGAAAGTCATCCCTACGAAATTGCTCTTTGGTACCT
CATAGGACAGTTGCCAACCACATAATCTAAACAACCTGATGAAAGAAAAA
ATAATTTCACTGGCAATGAGAGAGAAGAGAAGCTGACCCTCCGATATCAT
CGGACCGGGCCCTATCCCGGGAGATAGTTTCCTACCCCTAGATAGGGAAA
TCACAGCGCGTACCAGACATTATACTCTGTGCTCGCGAAAAATCAGAGCC
GTGCTATATCGATGATGATACTCGAACATTACGGGATAACCATGCGTTCT
CGCAGGTATTGAGCCATATGAGCCCGATGACCACTACACTACTGCGCCTT
TACTGGAAATTCTGAAATAAGAATGAAATCATAGAATTTTCCTCTTAGAC
ATTGGCAAAATGTGGAGTGGGTAAAGATTGCAGGTTGACTGCATTTAACA
CATCTGAACAACTGGATAGAGATATTGCAAGTGCGAATAATCTAACAACT
GAGGAAGACATCAACTTGGTGACTGAAATTTTGGGAAATATTGTCAATCA
AGCGAATCAACAAAATCAGACAAACGAAGACATGAAAAAGGTAAGCTGTC
TCTTCTATTCATATTCAATTATGTTCTGATGTTAATGTATCTAAGGGTAA
TGAAAACATATTGTGGGGTTAAACCTGTTAATTTCTAAGCTACATGTTCT
TATTAATCTGGGTGATATCGTTCTCCTGTTAACAGAAAACCCAAGGGAGG
GTACTTTTCAAATAGGGGTACAGGGATTTATCACCTCCACGAGTCCCAGA
TATGTTCGCAAAACACCAAAATATAAAAATCAGTCCCTTGTAGGGTGCCT
TTTTAGGGGAATTATGGAAAATTGTTTAGAGAACATTTAGGAATTTCAGT
CCCATTCTAGGTCACTTTAAAAAGAAAAACAAGTCCCTTTTTAAATGCTA
AATTGACTAATACGATTAAAAAACTCCCAATCTACTTTCTACTTTTTTCA
ATCTTCAGATCATGAATAATACAGTCTCAGTCGTTGAGAAAATCTTAGAA
GCATCAGATAACATCAAAATAACAGACCAAGAAACTTCACGTCAAAACAG
TCAATCAATGCTTCAAAGTTTTGAGAAACTTGCTGAGAAAACATCGAAAG
GATTGAAACCTAACGAGTCTACTAGTTTTGAAAGTCAAAACATCGCTGTT
GTCACTTCGAATCCATCTTCAGACTTGGATTTAGAGGTATCATCTTTCGA
TTCAACTGAAAACTCTGGCGAAATCAGAATCCAACAATCTCAAACAACTA
CAACTGGTAATGTATCAGACCCTAGTCTACAGGAAGCTTTTTTAGGGTCA
GTCAAAGTTCCTCGGGAAGTGTTACAAGAGTCTGTAGGCTGCCAAGATGG
ATTCTATTCTTATCTTATCAAGAATGCAGGATTTCTTTTTCAACCAGAAT
TGTCAAACTTTGAATTGAAAGGCAACGTCTTGGGTGCTTCTTGTGGCAGC
CAGAAGATAGAGAATTTAAGAAGACCAGTTGTTTTGAAATTTCCAAGACA
ACCTGTGGTTGCAGTAATTAGCGAAGACGAAAAAGAAGAGGAAATACCTT
TAAATCAATGCGGATATTGGGATACATTGACAGGTATTTCTTCTTTTCAA
ATTTGACTTTTTACTCAAAAAGTGCTTGTCAAGTACTGAGACGTGAAAAC
CTTTTCTCTGGATTGTCGATGTATAACAATATGGAAATATCTTTACTTGT
GTGTGTTTAATTATGAGTCTGAAAATGAGGGGATGAAGCCTCGGAAGGTA
TGATGCAATCCCTGACATTATTCCTTGGTATTTCAGGTTCTTGGTCTACC
AGAGGAGTTTCCACATCATTAACAAATGATCAAAGCATTGTCGAATGTTC
TACTGATCATTTGACAAATTTCGCGATGCTATTGGATGTTTCCCAGACCG
GAAGCAATCCGTTGGCTCTTCAAATTATCACGTGGATAGGATGTGGAATC
TCATTGGCTGGTTTATTGTTGACAATTGTCTCCTTTGCGATTTTCCGGTA
AGGCAGTGTCTTTCTTTTTGATAATCCCATTTGTTGGTGCTTGAATTCGT
ATTGAAGTTTGATATAAACAATAGAAATAGATACTTGCAAAGATTTCTCT
TTATTCTTAAAAACTTAGTATGCTCTAAAGGTCTATAAAGCAAGTTTTGA
CGTAAAGTAGCTCTACTAATTTGTTCAAACACTCTAAAGGTCTATGAAGC
AAGTTTTGACGTAAAGTAGCTCTAGTAATTTGTTCAAATGATCTAGTTAC
GATGGCCCTTTATACAACATTTCAGGAAAGTTCGAAGGAAATTGGTACCC
AAACTACTCATATGTCTAAGCACATCTTTAGCAATGACGTTGATCATATT
TCTGGCGGCTGCAGAGAAAACAGAACCTCGCTATCTATGTCAAACAACTG
CTGGATTAATACAATATTTCCTGTTATCCATGTTTTGTTGGTCCTCAGTG
GAAGCTTTCCATTTGTATTATTCGTTCGTTAAAATCTTTGCTACTGGTAG
TGATAGCAGATTCTTCAGAAAGGCTTTACTTTTTGCATATGGTAAGTTAA
CTAAAAGAGTAGGTGGATCTCGACATTCAATTCAGATTTTTTCATAGACT
GTGTGCATCTACCTGCAGCGTTCTATTTTCTTTCTAGTTTATATGATTTG
AATCCTGGAACGCAAATTTTCAATTAAGAAATAGTTTAGCTAAGAATCAT
TTTTTTCCTTGACGATAAAGAAGCGATGGTGTCGATTTATTTATGCAATA
AATATCCACGTCCCACTCCGTAATTAACAACAGGTCTTGTGAACAGCTAA
GTGATCAATTTTTCAATTTAGTATGTAATCTTTTCCTAGGATCGCCAGCA
GTAATTGTCGCAGTTACAGCTTCCTTGAGACCTGAAAATTATGGAAATGA
CAAATTGTAAGTTAACACCATTAAAAAGCAATTTAGTTTTATTTCCAATA
CTCCTGCATCCTAAAGAACTGTAAGTAATTCAAAGTAAACGCGCATACCC
GTTTGTCAATGGCTGGTTAGGGCCCTCGTCTGTCCAATCAAAAAATTGCC
CAAAAATAATTTCGTAAATTTTTTAGAGAAAGAACCTTTGGGAAAACTGA
ACTTTCCTGGATCTTGGAAATTCGCTTTTTAGAGAATTACGACGACGATC
TCATAATACTTTTTTATTTTTTTTGTTTCAGTTGTGTGGTGAATGGGCTA
CCATTTTTCTTGTCGATGCTACTTCCAATCTGTTTGATTCTCAGTGCTAA
TATGGTGGTTCTCGTATTAGTTGTCAGGGCAATAACAAAATCGGGTACAA
TGGCAGCCAATAAAAATAAACAAGATGGTAACGAAGCTATGAAAAAAGCC
AAAATTGCATTTGCTTGTTCAGTCTTATTGGGATTGACTTATATTTTTGG
TGTTCTGGCCGTTGGTGCCCTGACGTCTTTTTTCCAATGGTTGTTTTGCA
TTTTCAATTCCCTTCAAGGATTCTTTATCTTCTTCTTCTACACTTTCAAT
AACCAAGAATTGAAAACAGAATGGATGGATTTCTTGAATATCCAAAAGAA
ACAAAACATTGGATCAAGTAAGTATCCCAGCTGACTCTCAACGTTGTCTG
AACGAAAAATTACGTTATGGTAAACACATAGACTAGTTTTTTTAACTAAA
TGATAATTCTAAGTAGCATTTGCCTTATAGTAAAATCAAATATTGAACAG
AACGACACACTTTGCTATTTCACGATTATATTTTAAGAATAATACCCGTC
AATACTGTAATTTTACCTCCACCACAGAGCGCCCATCTACTTCCATACAT
ATCTATACCATTTCTGTAATATTAGTTTAATTATACACAATGTTTAAGCA
GACTTATTCATTTATAATAGAGATTTTGATTGGTCTGCATTATTACCTTG
AGAATCTGAAACAGAACCAATTTTGAACGCTAATTCCTAAGTTATGTGGT
CATTGAAAAATGCTGAGAACTTTGCGCAATCATGTCAATACCTCGATGTT
ACACATTTTTAATGCTTATGGGCCCAGCGCGCAGCGCAATGGGCCTTTAA
AACACAACTGGTCGAAAAAAATTGACTTTGTCGCCTATGCGCACAATCAT
CAATCGACGATTCCAGGTCAAAATCGAACTACCTGACTTTCTATTGTGTG
CATGCGTAAGAAAATACCACATATAATTAATACCTTCAACTTATATGGTC
ACATCCTTCTTAATTAGTAGAAAAAAGTTTAACTTAATTAAATCTTTATT
GCTCGCCCGACTCGAGTCTATACATTGAAAAAAATCGCTCCTGTTGTATG
GCAATTCTGCAGCGGAAAAATATGCTGACAGTGCCAACAACTGCTGGACC
TTTACGCCGCATAGGCTTTCTTGTATAAATAGCCATAACTTTCATTAAAG
TGCCACCGCAGCAAAACGAACACATAGAGTTAAATTTGCTTTCAAAAGGA
ATGGTATTAGCCCTACAGTAATTTTTGACTTTTCATCTAATCTGAGACAA
ATTCAGTCTTCAAATGCTAACAAATGTGTCAAGAAAGTATATCACATAAA
GTAGATGTTTATAAGGGAAATAAGTATGCTTATATTGTGCACCATTCATT
CTTTAATTTGTAGAATATGTTGATATTGTGCGCCATTATATTCATTCACT
TGATATTTTGTCGATCACGTTCGAAAGTGAATCTATTTTTAGAATATTAT
ATAATTTTCTAGACGTATTTTACACCGTATCTACACTTGCTTTCTAAACT
TCATTCCGCATCGACCACCGCTGCTGATGATATAAAAGTTACACTATCTT
TTTGTTTAGGTACTGGGGCACCAACTATTCCAATGCGATCAAAGATATCC
ACTGCTACTCTTGATGGACGTTGAACACATTAAGCTAGAACTGAAGAAAA
AATTCTAATGCAACAAGCATTGTTATGAGCTTAAAGAAAGAGAACTGGAA
ATTATTCGGGGTCACACAGCTTTCAACTCTCCTACAGCTTAGTCAAAGTC
ACCTGATGCACTTTTAACTATATACCTCCATTTTTATCTTTATAATAGTA
ACCGTACGTGTCTGAAACCTCTCTCTGTAGCATCTTGATTTTCGATAGCA
ATTCTAAGTCTTTTTCCGGGGCTGATGTTTAATTTTTGTTGTAACAGCAT
TGACAATTTTCATGAAAAAGAATTTAAATTAGTTCACCCTGATTAGTGTC
CAAGAATAACTTGAAAAAGAAAAATGGAGAATTGAAGTCATAGAAGCATT
CCCTCAGCCCCCCCTTGAGTGATTCTTACATTTTAACAATTATAAATCAT
TCAATTTTTGCTGGGATAAAACAATTCTCGAAAAACTCTTCATAGAATTA
ATTATTCAGCGGTCACTCATTCCGCCAGCATTGGCTCGATGGCTCCTATA
TCGATGGTAGTGTGTGAATTTGCTACTTCGAGGAATCAACTAATGTTTAA
TAAGGCAATGCAAGTAGTGAGGTCACTTTCGTTTACACCGTCTACTAGCT
TCCCTTGCAATACAGAAACAATGCCATCGATTAGGGCCGCCATACAGACA
CCTCAATGTTTGCATTGTATTACAGATTACTCAAAAACGGAAACTACTAA
AGTGCCTTGAAATTGTATATTATTTCACTTTTGCCAAAAAATTCACTTGT
GCTTTTTGAGGAAATTTCCAGACGGTGATAGAAAGTTTTGTGATTCTACA
AACGCATTTATTGACAATTAAAGTTTCCCTTGGGAAATGCCTTTAAATCG
GCTTTAAATCTAAGGATGAGTTTACAACCGTGAAAGAGGGTGTTTTTCCA
CTGACGTCTTAATAAAACGCTGAATAGCCCAAAACTATTCATATTATGGG
GAGGAAAAGAGATAATTACACTTGGTTTATGTTTTCTTTTCGAAAATAAA
TTTCATTTCCCACAGCAAAACAAGAGAAAATCGAAAAATCTTTTATTTTT
TTTCTTATCTTATATTTTTTGAAATGAAAAAGCTCT

Coding sequence (CDS) from alignment at sc0000005:837079..846764-

>TCONS_00000835 ID=TCONS_00000835|Name=TCONS_00000835|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0000005:837079..846764- (Clytia hemisphaerica)
AACTTGTGTAGAACCTTTAAGCAAACATTTGATGTTATCAGTAAGCTTTA
TGGGGAAACAATGAAGAAATCAACAATCTTGGCAGTGTTTAAAGTTATAT
TAGTTTTGGAAGAAACACTAGGGACAGAACCAGATGACAGATCAAATGCC
GGTTCACCATATGTTAAAGTAAGATTCACTTTAGATGTTTCCAATTACAA
CCATGGTAAATTCAATGGACGTCTATCTCTCATTCGTCAAGTTAGAGATG
AGATGTTCCGGGTGATGCAGGACGTTGACCGACATGAGAAAATTGAATTT
GATATCAAACAGCTAAATCTTAAAGAGTTGAAAATGGATTTTCGAATGTT
ACAAGAAAATGCAACAGTAGAGAAGTACCAAGCAGTCAAAGACAGATACC
AACAAATTTTGAGCTCAATAGATACCATTTCTAAATATACGTTGAAAGAA
AGGTCAACTGAAAACTTTGGATATTGCCCTGGTGTTACTGAAGGAAAGGA
ATCATTCAAAGGGCGATATATCTTCCCAAACTTAATTGTTGGAAGTCAAA
TCATGTTTCGCTGTGCTTATGGAAAGTCTTCATTTTCAAGATCTTGTTAT
CTGGGAGCAAATGGTCCCGTGTGGTCCCCGCTTGATTTGAAAAAGTGCGA
TGCGAAGAGTGCAACTACTCAATCCTTACTTGAATTGAATCAGACATTGG
CAAAATGTGGAGTGGGTAAAGATTGCAGGTTGACTGCATTTAACACATCT
GAACAACTGGATAGAGATATTGCAAGTGCGAATAATCTAACAACTGAGGA
AGACATCAACTTGGTGACTGAAATTTTGGGAAATATTGTCAATCAAGCGA
ATCAACAAAATCAGACAAACGAAGACATGAAAAAGATCATGAATAATACA
GTCTCAGTCGTTGAGAAAATCTTAGAAGCATCAGATAACATCAAAATAAC
AGACCAAGAAACTTCACGTCAAAACAGTCAATCAATGCTTCAAAGTTTTG
AGAAACTTGCTGAGAAAACATCGAAAGGATTGAAACCTAACGAGTCTACT
AGTTTTGAAAGTCAAAACATCGCTGTTGTCACTTCGAATCCATCTTCAGA
CTTGGATTTAGAGAATTGTCAAACTTTGAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000501XLOC_000501Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000835-exon-sc0000005-1575043694:846631..846764TCONS_00000835-exon-sc0000005-1575043694:846631..846764Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1575043694:845751..845869TCONS_00000835-exon-sc0000005-1575043694:845751..845869Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1575043694:845264..845322TCONS_00000835-exon-sc0000005-1575043694:845264..845322Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1575043694:844677..844834TCONS_00000835-exon-sc0000005-1575043694:844677..844834Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1575043694:843251..843474TCONS_00000835-exon-sc0000005-1575043694:843251..843474Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1575043694:842525..842716TCONS_00000835-exon-sc0000005-1575043694:842525..842716Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1575043694:841879..842106TCONS_00000835-exon-sc0000005-1575043694:841879..842106Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1575043694:841482..841667TCONS_00000835-exon-sc0000005-1575043694:841482..841667Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1575043694:841068..841278TCONS_00000835-exon-sc0000005-1575043694:841068..841278Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1575043694:840524..840789TCONS_00000835-exon-sc0000005-1575043694:840524..840789Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1575043694:840159..840225TCONS_00000835-exon-sc0000005-1575043694:840159..840225Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1575043694:839498..839883TCONS_00000835-exon-sc0000005-1575043694:839498..839883Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1575043694:837079..838255TCONS_00000835-exon-sc0000005-1575043694:837079..838255Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1510915933:846631..846764TCONS_00000835-exon-sc0000005-1510915933:846631..846764Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1510915933:845751..845869TCONS_00000835-exon-sc0000005-1510915933:845751..845869Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1510915933:845264..845322TCONS_00000835-exon-sc0000005-1510915933:845264..845322Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1510915933:844677..844834TCONS_00000835-exon-sc0000005-1510915933:844677..844834Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1510915933:843251..843474TCONS_00000835-exon-sc0000005-1510915933:843251..843474Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1510915933:842525..842716TCONS_00000835-exon-sc0000005-1510915933:842525..842716Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1510915933:841879..842106TCONS_00000835-exon-sc0000005-1510915933:841879..842106Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1510915933:841482..841667TCONS_00000835-exon-sc0000005-1510915933:841482..841667Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1510915933:841068..841278TCONS_00000835-exon-sc0000005-1510915933:841068..841278Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1510915933:840524..840789TCONS_00000835-exon-sc0000005-1510915933:840524..840789Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1510915933:840159..840225TCONS_00000835-exon-sc0000005-1510915933:840159..840225Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1510915933:839498..839883TCONS_00000835-exon-sc0000005-1510915933:839498..839883Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1510915933:837079..838255TCONS_00000835-exon-sc0000005-1510915933:837079..838255Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1491911889:846631..846764TCONS_00000835-exon-sc0000005-1491911889:846631..846764Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1491911889:845751..845869TCONS_00000835-exon-sc0000005-1491911889:845751..845869Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1491911889:845264..845322TCONS_00000835-exon-sc0000005-1491911889:845264..845322Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1491911889:844677..844834TCONS_00000835-exon-sc0000005-1491911889:844677..844834Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1491911889:843251..843474TCONS_00000835-exon-sc0000005-1491911889:843251..843474Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1491911889:842525..842716TCONS_00000835-exon-sc0000005-1491911889:842525..842716Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1491911889:841879..842106TCONS_00000835-exon-sc0000005-1491911889:841879..842106Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1491911889:841482..841667TCONS_00000835-exon-sc0000005-1491911889:841482..841667Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1491911889:841068..841278TCONS_00000835-exon-sc0000005-1491911889:841068..841278Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1491911889:840524..840789TCONS_00000835-exon-sc0000005-1491911889:840524..840789Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1491911889:840159..840225TCONS_00000835-exon-sc0000005-1491911889:840159..840225Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1491911889:839498..839883TCONS_00000835-exon-sc0000005-1491911889:839498..839883Clytia hemisphaericaexon
TCONS_00000835-exon-sc0000005-1491911889:837079..838255TCONS_00000835-exon-sc0000005-1491911889:837079..838255Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000835-proteinTCONS_00000835-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:837079..846764 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0221875	0	0	0	0	4.87653e-08	1.08114e-08	0.318374	0.0467424	0.057898	0.0449577	0.0221651	0	0.20688	0.00536125	0	0.109607	0	0.0353786	0	0	0	0.0209404	0.400033	0	0	0.0304234	0.0162343	0	0
Blast
[Close]
BLAST of TCONS_00000835 vs. Swiss-Prot (Human)
Match: AGRL3 (Adhesion G protein-coupled receptor L3 OS=Homo sapiens GN=ADGRL3 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 7.126e-35
Identity = 105/318 (33.02%), Postives = 167/318 (52.52%), Query Frame = 1 
Query: 1216 QPVVAVISEDEKEEEIPLNQCGYWD----TLTGSWSTRGVSTSLTNDQSIVECSTDHLTNFAMLL---DVSQTGS-NPLALQIITWIGCGISLAGLLLTIVSFAIFRKVR--RKLVPKLLICLSTSLAMTLIIFLAAAEKTEPRYLCQTTAGLIQYFLLSMFCWSSVEAFHLYYSFVKIFATGSDSRFFRKALLFAYGSPAVIVAVTASLRPENYGNDKFCVVNGLPFFL-SMLLPICLILSANMVVL-VLVVRAITKSGTMAANKNKQDGNEAMKKAKIAFACSVLLGLTYIFGVLAVGALTSFFQWLFCIFNSLQG 2133
             PVV  +   ++ EE     C +W     T+TG WST+G    LT +++   CS +HLTNFA+L+   +V  + + + L L +ITW+G  +SL  LL+ I +F  FR ++  R  + K L C+S  L +  ++FL    +T+    C   A L+ +F L+ F W  +E   LY   V++F +    R +    L  YG PA+IVAV+A++   +YG DK C +    +F+ S + P  LI+  N++ L + + +    +  +       D  ++     IA  C  LLGLT+ FG++ +   T    +LF IFNSLQG
Sbjct:  785 DPVVFTVKHIKQSEENFNPNCSFWSYSKRTMTGYWSTQGCRL-LTTNKTHTTCSCNHLTNFAVLMAHVEVKHSDAVHDLLLDVITWVGILLSLVCLLICIFTFCFFRGLQSDRNTIHKNL-CIS--LFVAELLFLIGINRTDQPIACAVFAALLHFFFLAAFTWMFLEGVQLYIMLVEVFESEHSRRKY--FYLVGYGMPALIVAVSAAVDYRSYGTDKVCWLRLDTYFIWSFIGPATLIIMLNVIFLGIALYKMFHHTAILKPESGCLDNIKSWVIGAIALLC--LLGLTWAFGLMYINESTVIMAYLFTIFNSLQG 1094
The following BLAST results are available for this feature:
BLAST of TCONS_00000835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGRL37.126e-3533.02Adhesion G protein-coupled receptor L3 OS=Homo sap... [more]
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