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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000851 ID=TCONS_00000851|Name=TCONS_00000851|organism=Clytia hemisphaerica|type=transcript|length=3562bpRun BLAST on NCBI protein sequence of TCONS_00000851-protein >TCONS_00000851-protein ID=TCONS_00000851-protein|Name=TCONS_00000851-protein|organism=Clytia hemisphaerica|type=polypeptide|length=709bp MDGQKLKDLLQCAYCLERLDEKSKVLPCQHTFCTKCLNIIVENKGHLHCPRun BLAST on NCBI transcript from alignment at sc0000005:1097257..1108679- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000851 ID=TCONS_00000851|Name=TCONS_00000851|organism=Clytia hemisphaerica|type=transcript|length=11423bp|location=Sequence derived from alignment at sc0000005:1097257..1108679- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000005:1097257..1108679- >TCONS_00000851 ID=TCONS_00000851|Name=TCONS_00000851|organism=Clytia hemisphaerica|type=CDS|length=2130bp|location=Sequence derived from alignment at sc0000005:1097257..1108679- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000851 vs. Swiss-Prot (Human)
Match: SH3R3 (SH3 domain-containing RING finger protein 3 OS=Homo sapiens GN=SH3RF3 PE=1 SV=2) HSP 1 Score: 239.58 bits (610), Expect = 1.680e-65 Identity = 166/541 (30.68%), Postives = 252/541 (46.58%), Query Frame = 1
Query: 379 DMDGQKLKDLLQCAYCLERLDEKSKVLPCQHTFCTKCLNIIVENKGHLHCPECKSDFRNTNIDELPKNMLLLRILETLKNTNNKLRGCSD------KLTEGQDEIPSVPKHENPK----PKDAV------------KRISAKSKYQAQINQPC----ARGLHNFISNEEGDLPFKKGDVISLAHEIDTNWYEGFLGNKRGSIPKNFLETLVPLPKIEDTKVENPFAKALYSYENK---EEPELISFREGDIIGVIKKVDNNWFGGILGGQYGIFPVNFVQLNKAAKEIMSGDQXXXXXXXXXXXXXXXRKKTSRGRRVSRQKAASTSEPNAQSSC---VRRDRGASTSNDPVTKRHTIHVENPDEQLRQSRRALNLSEDFEPQERTRAMSQGRRVNYECQQSVPRTLASTVLLSRALRRSDERLG-------------INTSSGLTPTVSMTTSIPRATEGITRSLSTSPSNSIPNAIGTGEMHTALFTYSPARDDELALIQGDQYSVIEKHLDGWFKGVHVRSQQCGVFPGNYVKPSSQV 1866
DMD L DLL+C+ CLERLD +KVLPCQHTFC +CL IV ++ L CPEC+ +DELP N+LL+R+L+ ++ G S + GQ P++ P V R A S+ PC + L+++ E GDL F KGD+I L ++D WY G L +G +P ++++ + PLP P KALY +E K ++ + ++F + +I+ V+++VD NW G+LG + GIFP+ +V+LN +AK+++ D+ P A SSC + D GA S P + + ++ ++ F T SQ + + S P VL+S + R+ R+G +++S+G TP T++PRA ++ T P +P + + AL+ Y P + DEL L +G+ Y V+EK DGWFKG +R+ GVFPGNYV P S+V
Sbjct: 45 DMDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRI-LVGCGVDELPANILLVRLLDGIRQRPRA--GTSPGGSPPARPIPGQSAAPTLAGGGGGAAGSTPGSPVFLSAAAGSTAGSLRELATSRTAPAAKNPCLLPYGKALYSYEGKEPGDLKFNKGDIIVLRRKVDEQWYHGELHGTQGFLPASYIQCIQPLPHAP------PQGKALYDFEMKDKDQDKDCLTFTKDEILTVLRRVDENWAEGMLGDKIGIFPLLYVELNDSAKQLIEMDKPC---------------------------------PAAASSCNASLPSDSGAVASVAPSPTLSSSGAVSAFQRRVDGKKNTKKRHSFTALSVTHRSSQAASHRHSMEISAP------VLISSSDPRAAARIGDLAHLSCAAPTQDVSSSAGSTP-----TAVPRAAS-VSGEQGTPPKVQLPLNV-----YLALYAYKPQKSDELELHKGEMYRVLEKCQDGWFKGASLRTGVSGVFPGNYVTPVSRV 526 The following BLAST results are available for this feature:
BLAST of TCONS_00000851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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