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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001051 ID=TCONS_00001051|Name=TCONS_00001051|organism=Clytia hemisphaerica|type=transcript|length=2223bpRun BLAST on NCBI protein sequence of TCONS_00001051-protein >TCONS_00001051-protein ID=TCONS_00001051-protein|Name=TCONS_00001051-protein|organism=Clytia hemisphaerica|type=polypeptide|length=525bp MDFSKAKGRSRRRNKIDDGHLYTNFPNPLMMYNKEPPRGDIALEEFETYARun BLAST on NCBI transcript from alignment at sc0000007:1027348..1041137+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001051 ID=TCONS_00001051|Name=TCONS_00001051|organism=Clytia hemisphaerica|type=transcript|length=13790bp|location=Sequence derived from alignment at sc0000007:1027348..1041137+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:1027348..1041137+ >TCONS_00001051 ID=TCONS_00001051|Name=TCONS_00001051|organism=Clytia hemisphaerica|type=CDS|length=1578bp|location=Sequence derived from alignment at sc0000007:1027348..1041137+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001051 vs. Swiss-Prot (Human)
Match: PRI2 (DNA primase large subunit OS=Homo sapiens GN=PRIM2 PE=1 SV=2) HSP 1 Score: 431.024 bits (1107), Expect = 3.308e-142 Identity = 223/487 (45.79%), Postives = 320/487 (65.71%), Query Frame = 2
Query: 143 MDFSKAKGRSRRRNKIDDGHLYTNFPNPLMMYNKEPPRGDIALEEFETYAVDRLKLLREVENINIRFKKNSPDHYTKMKKALVDFSPNYFEKTNPADSXXXXXXXXXXXXXXXMRIKLGEERRKDYVSHFILRLAFARSEDLRRWFLTQELELFRFKFTEL-KQHIQSFLQENQLEYKPIDDTEXXXXXXXXXXXXXXXXEVNFPEMKFYKVPFTSVLDLVRSRKVYLEKGEAYVPETELVSIILGIYRTHLSQALALTAKKLPYIEEDTRLLPMLKNLSSAYIGDSYTSKKENADDKLSLANMEEDVVKSYPICMRNLHEGLRKDHHLKHWGRLQYGLFIKAAGLSLEEALLFWRSEFTK-KMDLDKFEKQYAYNVRHSYGKEGKRADYTPYSCMKIITTNQPGPGDFHGCPFKHSDNDILKRRLQNYKIPNDSIKEILDLAKQQHYQIACSRYFEVTHKLPNGVTMINHPNQYFDESKKFLSGEK 1597
M+FS GR R+ ++ ++P+ L Y +PP +I+L EFE A+DR+KLL+ VEN+ + + K + + +K++ L +Y E N D E RR+D++SHFILRLA+ +SE+LRRWF+ QE++L RF+F+ L K IQ FL+++QL+++ I D EK ++ A+ + + YK+PF LDL R RKVYLE G AYVP ++V+IIL +R LS+ALALTA+ LP ++ D RL P+L +LS +Y G Y+++ K+SL ++ KS+P CMR LH+ LR++HHL+H GR+QYGLF+K GL+LE+AL FW+ EF K KMD DKF+K Y+YN+RHS+GKEGKR DYTP+SC+KII +N P GD+HGCPF+HSD ++LK++LQ+YKI I +ILDL K HYQ+AC +YFE+ H + + +NHPNQ+F ES++ L+G K
Sbjct: 1 MEFS---GRKWRKLRLAGDQRNASYPHCLQFY-LQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSYRE--NLEDEY--------------------EPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHLSHSYTGQDYSTQGNVG--KISLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGK 459 The following BLAST results are available for this feature:
BLAST of TCONS_00001051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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