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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001075 ID=TCONS_00001075|Name=TCONS_00001075|organism=Clytia hemisphaerica|type=transcript|length=6682bpRun BLAST on NCBI protein sequence of TCONS_00001075-protein >TCONS_00001075-protein ID=TCONS_00001075-protein|Name=TCONS_00001075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1133bp MATLQEAIENVRRLENLSLNLDEQANIEAPPASITYTCDFDTNFGDKEAFRun BLAST on NCBI transcript from alignment at sc0000007:1377209..1400371+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001075 ID=TCONS_00001075|Name=TCONS_00001075|organism=Clytia hemisphaerica|type=transcript|length=23163bp|location=Sequence derived from alignment at sc0000007:1377209..1400371+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:1377209..1400371+ >TCONS_00001075 ID=TCONS_00001075|Name=TCONS_00001075|organism=Clytia hemisphaerica|type=CDS|length=3402bp|location=Sequence derived from alignment at sc0000007:1377209..1400371+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00001075 vs. Swiss-Prot (Human)
Match: CYFP1 (Cytoplasmic FMR1-interacting protein 1 OS=Homo sapiens GN=CYFIP1 PE=1 SV=1) HSP 1 Score: 1210.28 bits (3130), Expect = 0.000e+0 Identity = 605/1089 (55.56%), Postives = 802/1089 (73.65%), Query Frame = 3
Query: 60 ANMATLQEAIENVRRLENLSLNLDEQANIEAPPASITYTCDFDTNFGDKEAFITGIARYMEEAGLHQQLSEMLESGESYACMLYTWRCLSRAVPTAKSDEQQNRQEMYQSTLDVMKPHIQRLKDFMYFHESSTSAFCKEVKRLCHPERRKDFVSETHLLTLGKCINMFAVLGSLKNMKACLNNDFAFYKRAETFLKQTTGDEKALQESQNLTMFLATHDIITSKLKSSLEEIEGYDELLADIINLCVHFYEFRMYVLPKEKHLLLKVIGFTLFLLDGKACNINKLDQXXXXXXXXXXXXXXSLPVVPLYGDMQISLISYVKSCPHFE--SARWSCAADNAEEKIGSTQYNLTGKIALIQDEHLRFMCEISKTHNECQRRLYSSDQYSNNNPRRIL--SPEECKSLSDLALRGLRLISSWNAQVMELFYWKLLHLTDRYSNPMCPEDAENYERATRYNYDSNEKYALVQVIAMIKGVTGAMRRLEAVFSSAIRYYIHAELQEFVQITMREPLRKATKNSKKTHMRTILKAVRDTAIDLSKNAK--EDPALRGEKDPKSGFHIDIPNRPVGPSTTQLYMLRTMLESLISEKSGRGKDKSFRKDLDSATVTAIEAFLRSSLFYPYLLKFDQMLKECGDLSQLWYREFFLELTMGQRIQFPIEMSMPWILTDHILQAKDAAMMEYVLLPLDLYNDSADYALNVFKKRFLYDEVEAEVNLCFDQFVFRLSEDIYSHYKQVASSMLLDKKFRSELERRYVEEKRPFPADGIIPFPPTNRFHTLILQRHVQLLGRSVDLNKLLEQRLTISLQKSLDVIITKFESGPLCGIMELENLIEINRLTHRMLSKYVQLPEFSSMIREANHAVSAPYGRITLHVFWELYYDFLPNYCFNAATDRFTRTTYSFVSEVTRDQPPKTIQCHFYGNKELHSAYTSVFSLYENFVGTEHFGCIVRLLSYQGIAVVIEELLKIVQSLFQGTIQQYIQVLMDGMPGKCGLPRFEYGSAGVLEFYNANLESIMQYRDLKTEVFQAFREVGNIIIFCLQVEELLTQEEIADLLHAAPFQGIIPRPYVKDKDSVEQKMKRLEAQYAAXQPFH 3308
A TL++A+ NV LE L L D+Q IE PP+S+ Y +F+TNF D+ AF+TGIARY+E+A +H ++EMLE G+ YA MLYTWR SRA+P K +EQ NR E+Y+ T++V++P + +L +FMYF ++ FC EV+RLCH ERRKDFVSE +L+TLGK INMFAVL LKNMK + ND + YKRA FL++ D +++QESQNL+MFLA H+ IT L+ LE I GY+ELLADI+NLCV +YE RMY+ P EKH+LLKV+GF L+L+DG NI KLD KK+IN+SKIDK FK L VVPL+GDMQI L Y+K+ H+E +RW+C + + S QYN+ ++ I+++H+RF+ E+++ YS+ + + R+ + E + L DLAL+GL+L+S W+A VME++ WKL+H TD+YSN CP+ AE YERATRYNY S EK+ALV+VIAMIKG+ M R+E+VF+ AIR+ ++A LQ+F Q+T+REPLR+A K KK ++++L+A+R T D + DPALRGEKDPKSGF I +P R VGPS+TQLYM+RTMLESLI++KSG K+ R L+ T+ IE F R S FY +L+ F + L++C DLSQLW+REFFLELTMG+RIQFPIEMSMPWILTDHIL+ K+A+MMEYVL LDLYNDSA YAL F K+FLYDE+EAEVNLCFDQFV++L++ I+++YK +A S+LLDK+ RSE + + I PP+NR+ TL+ QRHVQLLGRS+DLN+L+ QR++ ++ KSL++ I +FES L I+EL+ L+EINR+TH++LS+Y+ L F +M REANH VSAPYGRITLHVFWEL YDFLPNYC+N +T+RF RT F E RD+ P + +G+K L+ AY+S++ Y NFVG HF I RLL YQGIAVV+EELLK+V+SL QGTI QY++ LM+ MP C LPR EYGS G+LEF++ L+ I++Y +LKT FQ REVGN I+FCL +E+ L+ EE+ DLLHAAPFQ I+PR +VK+ + ++ KMKRLE++YA P H
Sbjct: 2 AAQVTLEDALSNVDLLEELPLP-DQQPCIEPPPSSLLYQPNFNTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVSEAYLITLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKM-ADPQSIQESQNLSMFLANHNKITQSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSNIYKLDAKKRINLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTCTSSGS-----SPQYNICEQMIQIREDHMRFISELAR---------YSNSEVVTGSGRQEAQKTDAEYRKLFDLALQGLQLLSQWSAHVMEVYSWKLVHPTDKYSNKDCPDSAEEYERATRYNYTSEEKFALVEVIAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKK-KKNVIQSVLQAIRKTVCDWETGHEPFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKSG--SKKTLRSSLEGPTILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRSECKNQ----------GATIHLPPSNRYETLLKQRHVQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFESEDLTSIVELDGLLEINRMTHKLLSRYLTLDGFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKYA---PLH 1058 The following BLAST results are available for this feature:
BLAST of TCONS_00001075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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