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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001094 ID=TCONS_00001094|Name=TCONS_00001094|organism=Clytia hemisphaerica|type=transcript|length=1489bp TTGTCATTGCTCTTGATGACGCGCTCGCGCATGTCATGTAGAAGATCTTT TCAAGGTCACCTAAATGAAGtgtgttttcttttcaagtcatcatgttttc tgacaaaatttttctttccctttttttttgaaagttgttaaaggttttaa ataAGAAACGTCACTTTGTTGTTGCTCATCACTGGCAAATGTGTGTGTTG ATATAAATACATTGGAAGAGTCGGTCACACTCTTATAAAATCTCCGTTAC TCAACAAGACATTTTTCGCTGGTCATAAGACTTACTTAAAAAGACGTTTG ATAAATTGAGAGAACGATGTATTTGATTTTTGTACTGATgttacaatgtt tttgtttgacttCTGGTGGAAAGTTCGTTAAAGAACGAGtGCATTCGCGG ACAAGACGAGATACGGTAGCAGACGAATACCGGAAATGGCCGGGAGGGAT TGTTCCGTATACTTTCGGTTTTACTGCAGGTTACAAAGAGCAGCAAGTTT TCAAGCAAGCCATCAAAGAAATCGAGAAAGTTTCTTGTGTTCGTTTCGTA AAGAGGACCACTGAACGAGATTATGTTCGAATCATATCAAGCAGAGAAGG ATGCTTCTCAACGATTGGTCGTGATGGAGGGCAACAAGATTTATCCTTAG GAGATGGTTGCCACACCAAAGGCATTGCACTACACGAGACTTTCCACACT TTAGGCTTCTATCATGAGCACGTGAGGAGGGACCGCGATCACCATGTTTT TGTTGATGTCAGCAATGCGATGGAAGGAGCGAAAagacaatttgaaaaat acaagccGGGAGAAGCTCATACTCTCGGACACCCTTATGATCCGGACAGC ATCATGCATTACTCCAACAGAGCCTTTAGTAAGAATGGACATAAAACCAT CACCTACCGGAAAGACCCTTCAAAGAAGTTGGGACAGCGAGTAAAATTGA GCCCTATCGATATCAAACAACTGAATGAGCTTTACAGATGCAAAAACAAC ACCTCGAATGTGAAGAAGCCGAAAAAGACACGAATCGAGATAGATACTTG TCGCGATGACCCATGGGTTGGCTTCCAGTGtttgttttacagattttctg gTGGCTGTTATTTCTACCGAGAGCGCATGCGTCAAGCTTGTCCGAAAACG TGCGGATTTTGTCGTTCGACGTGTTTTGATACGTCGCAATATTGCAATTA CTTCGTGTATCATGGTTACTGTACAAGGAGCGAAAATGTTCGAAAACGAT GTCGTAAAAGTTGTAAGATCTGTCGCATTGCGTAATCGTCATAACAATCT CGATATAATTTTTATTGCGACAAACGAACTTGATTTCCAATCATTGAATA TGTCGATACCACTATTGTAAATTTTTCTGTCGATGAAATTTTGATTGACG ATTCCTCTTAAAAACGCGTTTACATTATTGTAAATATGAAGAATTGTTTG AGGTAAATAGCTAATGTGTTGTGTGTATGTAAAATTGAC Run BLAST on NCBI protein sequence of TCONS_00001094-protein >TCONS_00001094-protein ID=TCONS_00001094-protein|Name=TCONS_00001094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MYLIFVLMLQCFCLTSGGKFVKERVHSRTRRDTVADEYRKWPGGIVPYTF GFTAGYKEQQVFKQAIKEIEKVSCVRFVKRTTERDYVRIISSREGCFSTI GRDGGQQDLSLGDGCHTKGIALHETFHTLGFYHEHVRRDRDHHVFVDVSN AMEGAKRQFEKYKPGEAHTLGHPYDPDSIMHYSNRAFSKNGHKTITYRKD PSKKLGQRVKLSPIDIKQLNELYRCKNNTSNVKKPKKTRIEIDTCRDDPW VGFQCLFYRFSGGCYFYRERMRQACPKTCGFCRSTCFDTSQYCNYFVYHG YCTRSENVRKRCRKSCKICRIA Run BLAST on NCBI transcript from alignment at sc0000007:111454..116006- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001094 ID=TCONS_00001094|Name=TCONS_00001094|organism=Clytia hemisphaerica|type=transcript|length=4553bp|location=Sequence derived from alignment at sc0000007:111454..116006- (Clytia hemisphaerica) TTGTCATTGCTCTTGATGACGCGCTCGCGCATGTCATGTAGAAGATCTTT
TCAAGGTCACCTAAATGAAGTGTGTTTTCTTTTCAAGTCATCATGTTTTC
TGACAAAATTTTTCTTTCCCTTTTTTTTTGAAAGTTGTTAAAGGTTTTAA
ATAAGAAACGTCACTTTGTTGTTGCTCATCACTGGCAAATGTGTGTGTTG
ATATAAATACATTGGAAGAGTCGGTCACACTCTTATAAAATCTCCGTTAC
TCAACAAGACATTTTTCGCTGGTCATAAGACTTACTTAAAAAGACGTTTG
ATAAATTGAGAGAACGATGTATTTGATTTTTGTACTGATGTTACAATGTT
TTTGTTTGACTTCTGGTGGAAAGTTCGTTAAAGAACGAGGTTTGTAAAAT
TTATGCTATTGTTTTATAGTGCTTGAAGCACTTGAATCTCATCGAGATTT
TGATCATTTTACGTTCGAGAGTCGCAAAAAATGAAGAAAGACATCAAAAC
GAACGGGAGCATCGTCGTTCCTCTGAATTTTAAAGATCCACCTCTGACAA
TCCTAACCCGCTATAATATGGACCAAAATTAAGTAAATGGTTCTTAGGTC
AATGAACCCCAATAAAGAGTTGGGTAAACAAATAGGACCATTTTGTGATA
TGAAAATTTATGAAACTATGAAAATCTATCACAAATCGCTTGTTGATGTA
GTCTTAATTTGTTTAGATGTTTGTCTCAAACCTTACAACTTTTGAGGGAA
AATTATTAAATTTGTTGATCGACGGTACCATCTTAAGTTGTCAATAGAAA
TTTGAGAATACATGCCTTAGGAAATACGTCGGTTTTTTTTACCGGATGAA
CTTTGTTCTTTCACTTGCAAATTACAAGTCAAGGCTTAGGGCAGTCTGTT
CTCAAAAGTATTTCCGATATATTGAGCAGTGTGACGTTTTGAAGAGGAGC
AACGGATTTCACGTAATGCGACTGTCTTCTGATAGCGGATGAAAGATGCC
CGTTACCACAGGCTTATTGATGTTGTTGTTGACAGTGTCAAAACCACATG
AACTTCCACTGGTCGCACTATTTTTATGAATATTATGCAAGAAAATGTTT
GAGGTTACAACCTATGTTTCTTTTATAAAGTGTTTTATTTATCTCATCCT
TAAATTGTGGTTGAGAAGCGCTAAAAACGTCAAAATGTTGACTGCTTGAT
GTCTTGTTTCATTCTTTTTTTCAGTGCATTCGCGGACAAGACGAGATACG
GTAGCAGACGAATACCGGAAATGGCCGGGAGGGATTGTTCCGTATACTTT
CGGTTTTACTGCAGGTGAGTGAGCTTCGTGTTGTCTTCACACGAAATCCA
TGTTCGCAGAAATCGATTTCATTTGATATTTGAGTACCACTGAGGATTGA
CTTTTCTAATTTTAGCATGCCTGGGATATAGTACACTGTAATTGAGTTGC
GAAAAATATATTTGTTATTTGAAACAGGAGAATCGTGTTAGTAAAATATT
TGAACCGTATTTGAGCTAATGCCGATAAAGATCATCCTATCCTTATTCTG
TTGGTTTCAGGAATTAGAAACAAACGACTAAATTCCGAGTACCTTTTTCT
TTGTGAATGATTTCATTAAGTCCCTTTCTACAGGTTACAAAGAGCAGCAA
GTTTTCAAGCAAGCCATCAAAGAAATCGAGAAAGTTTCTTGTGTTCGTTT
CGTAAAGAGGACCACTGAACGAGATTATGTTCGAATCATATCAAGCAGAG
AAGGGTAAGAACAAGCTAGCACTAAATCGATGTGCACTTGCAGTCTAATT
ACCAAGGATTGGGCTATTCCAGAAATAGTCTGTACCCTATGTCGAAGAGG
TGTGACGTCCAGGGTGGTCTGGAAAATCTGGAAAATAAAAAAACCTGGGG
AGTCTGGTTTTTGAACGAAAAAATCCAGGGTGGTCAGTAAAATGAGGTTG
GAAATCTAGGGTGGTCAGTGACACGAGGTCGAAAATCCAGGGTGGTCAAT
TTTTTTTAAATCCTCCTCAACATAGGGGGTACAAATTTCTCCTGGAATAG
CTAGGTTACGGCTTAGCGTTATCGGTGCTTCATAATATTTAAGGACTTTC
AGTTTTCTAAAACTCTGTCCAAATATAACATTCAGATCTATCGAGTGGTA
GCGCCAATTTAGCTTCGATTTCAAGGCTAATGCACTATGTGCAACATAAG
CCCTTTATTTATGAATTTTGTGTTTTTTAACATGACATACCGGTTTTTGT
TCTCGAAAACAATCTTTACCTATGATTTGGGTCCAGGTTGAATGATTCGT
TTCTATTCAACATCTATCTTCACTTTTCAGATGCTTCTCAACGATTGGTC
GTGATGGAGGGCAACAAGATTTATCCTTAGGAGATGGTTGCCACACCAAA
GGCATTGCACTACACGAGACTTTCCACACTTTAGGCTTCTATCATGAGCA
CGTGAGGAGGGACCGCGATCACCATGTTTTTGTTGATGTCAGCAATGCGA
TGGAAGGTGTGTCTCTTTATCTTTCTTTTTATTGTTGTTCAACTAAAAGA
AGTTGCCTTTTGTTGTAGACTCGATTTTCAACTTTGATATCAATGGGCAA
CGAGTACGTTTTTCTTCTGATAACGAAAAGATTTGACAGGTGTGAAAACA
TTAAAAAACTTTATCGTTGCCCTCTTGTTGTAAACGTGATCGCTTGAAAT
GAAAAACATTAATCCTGTAAACTTTTTAACGAGGTGCGACTCATGTATAT
TACCTGTCAATCGACGTGCTATCTGCACTTGTTTTCTTTATTGTGTTGAT
ATTTCATAAAATACCGCCCCAAACCGCTAGATCGATATTTTTTCCCCAAA
AAATAGCTTNTTTTTCTTCTGATAACGAAAAGATTTAACAGGTGTGAAAA
CATTAAAAAACTTCATCGTTGCCCTCTTGTTGTAAACGTGATCGCTTGAA
ATGAAAAACATTAATCCTGTAAACTTTTTAACGAGGTGCGACTCATGTAT
ATTACCTGTCAATCGACGTGATATCTGCACTTGTTTTCTTTATTGTGTTG
ATATTTCATAACATACGGCCCCAAACCGCTAGATCGATATTTTTTCCCCA
AAAAATAGCTTACATCTGTTATAGGAGCGAAAAGACAATTTGAAAAATAC
AAGCCGGGAGAAGCTCATACTCTCGGACACCCTTATGATCCGGACAGCAT
CATGCATTACTCCAACAGAGCCTTTAGTAAGAATGGACATAAAACCATCA
CCTACCGGAAAGACCCTTCAAAGAAGTTGGGACAGCGAGTAAAATTGAGC
CCTATCGATATCAAACAACTGAATGAGCTTTACAGGTTTGTAAATCTCCG
AAAGATTGAATGAAGGATTATTGTATTTGAATAATCTAACATCTTCCTTT
TTACTACCGGAAACACGTTTTCTGCTCTTATTTTGGTAAGAAAAATGGCG
TAATCATATGCCCATCCAATAATTGAGTTGAATTGCCCATAGAATGTCTT
CTCTATCATGTTCTCTTTTTGTGTACAACTTTTTGACAGTGACTTCATTC
TACCTTTCTTTCCAGATGCAAAAACAACACCTCGAATGTGAAGAAGCCGA
AAAAGACACGAATCGAGATAGGTAAGAATACGAACAAAATTTTCAACTTG
ATTCTATCTATTTCTTTCAATGGTCAACGCCCCCTAATCTAGCTCAATCC
AATTTTGAACTTAAGCCAAAAAGAAAAGTTGGACCATCTTGCAATAGGTA
GAAATTGCTTCTTGCATGTTTGAAACAGAGATTCCAACCATCAGACCATT
CCGTACCCATATTCCGTAATAGATGTGGGCAACTCGCGCTTCACCTAAAC
CAAATTTTTTTAGTGCAATTATCAGCATGATGAAACATTTAGCTACAATC
GTATAGCGCTAAAACCAGCAAAAATTACTAAATAAATAGGCCTATAAATG
TGTTTGTGAACTGTTGAAAATTTCATTGAAAACCAAATAGTTTCGTGAAA
TTTGGGATGATCTACATCCGAGGAGTCCTGGGTAGAATGAACATGTATTA
AAAATGATTATTTTATAACTTTATTCGAAAGTGTTCCATATTTTCTCGTT
TCCATAGATACTTGTCGCGATGACCCATGGGTTGGCTTCCAGTGTTTGTT
TTACAGATTTTCTGGTGGCTGTTATTTCTACCGAGAGCGCATGCGTCAAG
CTTGTCCGAAAACGTGCGGATTTTGTCGTTCGACGTGTTTTGATACGTCG
CAATATTGCAATTACTTCGTGTATCATGGTTACTGTACAAGGAGCGAAAA
TGTTCGAAAACGATGTCGTAAAAGTTGTAAGATCTGTCGCATTGCGTAAT
CGTCATAACAATCTCGATATAATTTTTATTGCGACAAACGAACTTGATTT
CCAATCATTGAATATGTCGATACCACTATTGTAAATTTTTCTGTCGATGA
AATTTTGATTGACGATTCCTCTTAAAAACGCGTTTACATTATTGTAAATA
TGAAGAATTGTTTGAGGTAAATAGCTAATGTGTTGTGTGTATGTAAAATT
GAC Coding sequence (CDS) from alignment at sc0000007:111454..116006- >TCONS_00001094 ID=TCONS_00001094|Name=TCONS_00001094|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at sc0000007:111454..116006- (Clytia hemisphaerica) ATGTATTTGATTTTTGTACTGATGTTACAATGTTTTTGTTTGACTTCTGG TGGAAAGTTCGTTAAAGAACGAGTGCATTCGCGGACAAGACGAGATACGG TAGCAGACGAATACCGGAAATGGCCGGGAGGGATTGTTCCGTATACTTTC GGTTTTACTGCAGGTTACAAAGAGCAGCAAGTTTTCAAGCAAGCCATCAA AGAAATCGAGAAAGTTTCTTGTGTTCGTTTCGTAAAGAGGACCACTGAAC GAGATTATGTTCGAATCATATCAAGCAGAGAAGGATGCTTCTCAACGATT GGTCGTGATGGAGGGCAACAAGATTTATCCTTAGGAGATGGTTGCCACAC CAAAGGCATTGCACTACACGAGACTTTCCACACTTTAGGCTTCTATCATG AGCACGTGAGGAGGGACCGCGATCACCATGTTTTTGTTGATGTCAGCAAT GCGATGGAAGGAGCGAAAAGACAATTTGAAAAATACAAGCCGGGAGAAGC TCATACTCTCGGACACCCTTATGATCCGGACAGCATCATGCATTACTCCA ACAGAGCCTTTAGTAAGAATGGACATAAAACCATCACCTACCGGAAAGAC CCTTCAAAGAAGTTGGGACAGCGAGTAAAATTGAGCCCTATCGATATCAA ACAACTGAATGAGCTTTACAGATGCAAAAACAACACCTCGAATGTGAAGA AGCCGAAAAAGACACGAATCGAGATAGATACTTGTCGCGATGACCCATGG GTTGGCTTCCAGTGTTTGTTTTACAGATTTTCTGGTGGCTGTTATTTCTA CCGAGAGCGCATGCGTCAAGCTTGTCCGAAAACGTGCGGATTTTGTCGTT CGACGTGTTTTGATACGTCGCAATATTGCAATTACTTCGTGTATCATGGT TACTGTACAAGGAGCGAAAATGTTCGAAAACGATGTCGTAAAAGTTGTAA GATCTGTCGCATTGCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001094-exon-sc0000007-1575043694:115618..116006 | TCONS_00001094-exon-sc0000007-1575043694:115618..116006 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1575043694:114693..114782 | TCONS_00001094-exon-sc0000007-1575043694:114693..114782 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1575043694:114253..114373 | TCONS_00001094-exon-sc0000007-1575043694:114253..114373 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1575043694:113501..113676 | TCONS_00001094-exon-sc0000007-1575043694:113501..113676 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1575043694:112672..112882 | TCONS_00001094-exon-sc0000007-1575043694:112672..112882 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1575043694:112386..112441 | TCONS_00001094-exon-sc0000007-1575043694:112386..112441 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1575043694:111454..111899 | TCONS_00001094-exon-sc0000007-1575043694:111454..111899 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1510915933:115618..116006 | TCONS_00001094-exon-sc0000007-1510915933:115618..116006 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1510915933:114693..114782 | TCONS_00001094-exon-sc0000007-1510915933:114693..114782 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1510915933:114253..114373 | TCONS_00001094-exon-sc0000007-1510915933:114253..114373 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1510915933:113501..113676 | TCONS_00001094-exon-sc0000007-1510915933:113501..113676 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1510915933:112672..112882 | TCONS_00001094-exon-sc0000007-1510915933:112672..112882 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1510915933:112386..112441 | TCONS_00001094-exon-sc0000007-1510915933:112386..112441 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1510915933:111454..111899 | TCONS_00001094-exon-sc0000007-1510915933:111454..111899 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1491911889:115618..116006 | TCONS_00001094-exon-sc0000007-1491911889:115618..116006 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1491911889:114693..114782 | TCONS_00001094-exon-sc0000007-1491911889:114693..114782 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1491911889:114253..114373 | TCONS_00001094-exon-sc0000007-1491911889:114253..114373 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1491911889:113501..113676 | TCONS_00001094-exon-sc0000007-1491911889:113501..113676 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1491911889:112672..112882 | TCONS_00001094-exon-sc0000007-1491911889:112672..112882 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1491911889:112386..112441 | TCONS_00001094-exon-sc0000007-1491911889:112386..112441 | Clytia hemisphaerica | exon |
TCONS_00001094-exon-sc0000007-1491911889:111454..111899 | TCONS_00001094-exon-sc0000007-1491911889:111454..111899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000007 | supercontig | sc0000007:111454..116006 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0004222 | metalloendopeptidase activity |
GO:0008237 | metallopeptidase activity |
GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
Term | Definition |
GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006508 |
proteolysis |
molecular_function |
GO:0004222 |
metalloendopeptidase activity |
molecular_function |
GO:0008237 |
metallopeptidase activity |
molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00001094 vs. Swiss-Prot (Human)
Match: TLL2 (Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 7.057e-28 Identity = 88/220 (40.00%), Postives = 120/220 (54.55%), Query Frame = 2
Query: 398 RTRRDTVADEYRKWPGGIVPYTFGFTAGYKEQQVFKQAIKEIEKVSCVRFVKRTTERDYVRIISSREGCFSTIXXXXXX-XXXXXXXXCHTKGIALHETFHTLGFYHEXXXXXXXXXXXXXXSNAMEGAKRQFEKYKPGEAHTLGHPYDPDSIMHYSNRAFSKNGH-KTITYRKDPS---KKLGQRVKLSPIDIKQLNELYRC-------KNNTSNVKKP 1021
R RR T + R WPGG++PY G ++ +FKQA++ EK +CV F++RT E ++ GC S +GR GG Q +S+G C GI HE H +GF+HEH R DRD HV + N G + F K + GE +LG YD DSIMHY+ FS+ TI R+D + +GQRV+LS DI Q +LY+C ++ T N P
Sbjct: 146 RVRRATTSRTERIWPGGVIPYVIGGNFTGSQRAIFKQAMRHWEKHTCVTFIERTDEESFIVFSYRTCGCCSYVGRRGGGPQAISIGKNCDKFGIVAHELGHVVGFWHEHTRPDRDQHVTIIRENIQPGQEYNFLKMEAGEVSSLGETYDFDSIMHYARNTFSRGVFLDTILPRQDDNGVRPTIGQRVRLSQGDIAQARKLYKCPACGETLQDTTGNFSAP 365
The following BLAST results are available for this feature:
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