TCONS_00001103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001103
Unique NameTCONS_00001103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2965

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001103 ID=TCONS_00001103|Name=TCONS_00001103|organism=Clytia hemisphaerica|type=transcript|length=2965bp
GATCTCCTTCTTCAAACAATGCTCAACGAAGTGTAAACCCATCTTCTGCA
CAATTCAATTAGTCTTCTCTTTGTACTTTGTACTGCATATTCTTCTTTGA
GACACAAACAAATCTGATATCCGGATTTTCAACtgattgtttgttttgtt
tgctGTCTGCCTATCTATGACGTCACAGATAATGTGATGGCTGgcgattt
tgtatttatcttcgGTCTATTTGCTGTTGTTGTTTTCTCGCCATTTAACG
ATGGCCGGCAATTATCGCCTTCAGTAAGTGTACAGCCTACTACGGAAAAT
TGGTTGGAATTGCCAGTTAAAAGTTTGGCGAACATTGTTTCATCACCTTC
ACTaacaaaaagtgcaaatactGTTGTTGGGAATAAAAAATCGTTCGTTC
GAAAGGAGTCCCTGATTCTCAGTAATCCGAAGCCAAGCAATGAGAAAGTC
GATCATTTGTTGTCATTTGctcatcaaaacaaacctgagaATGGTCAGGC
GTTAGCCTCAGAAAACGAATATAAAAATTCAATAGACAGTGTGAATTATG
TTGAAGACCAACAAGAGAGGATGAACGAGGATAGACTACTTGAGCAACAG
GATATGCTCTCATACATGCCCACTGAGGGTTCTTCgcacaaaatgaaaaa
ttcttcttttaatgATGTCGTTTCTGGTACTGGGAGAAGCTCATTTCTTC
ATTATGCGAAACTCTCATCACCTCATAAAAACCATGTAGTGAACAAGACT
TATTTCACTCCTGTGACCCAGCGAGAAAAAGGTCTAAAGAGATTTGAAGA
ATTGTTTTTGAAGAATGGAGCACAGTACGATGGAGTGAACATTTATAAAG
AAACGCCGAAAGACGCGGAAGAGTTTGAGAATCTCGATACTGCTCCCATA
TTAACCGATGGAACGAAAAGAGATGATAGTAACAGTCAGATGGAAGCCGA
AATGGAAGCTCTCCAGCTCAAAATGGAAaagttgaagaagaaaatgaaca
aaTCGAAAAACGGTCGTCAAAGTTGGGTCAATAAAGCATTTGGTAAATTA
AGCCATGGCCATAAAATCGATTCAAGTGACATGAAAAATTTGATGTACAA
ATTGAAGACGCAAGTCATGTCAGAAGACGATTCTATTGATGGAGCGGATG
TCGAGAAAACAGAATCCTCTTTCGATGAAGAAAAATCCACTTCGGAAGCA
CCAGTTGACGacaaactgaaaattcttcTGGCTGAGCAAGAGAAGATTCC
GCCACCGCCATCCAGCAAAGAAAAACGCCCACCCAAAGATGATGAGGAAC
TAATCACCGTCAAACCAACTGCAAAACCAGGAGATGAGTTACCACCACCA
GCTGATATCAAGCCACCCAAACCGCCCAGTATTGAGAAAAGACCGAAACC
AGGCGATGAACAACCACCCCAAACGCTGGTGGACACTCTTCCACCGGTCA
CCAGTGGCTCCACCATGTTCTTCTCGTATGATGATGGCACCCCTAATGGT
CCATCATCATGGCAAAGGTTGAATGGTCGTTGGACATGTGAAGGACGAAA
GCAATCACCAATCAACATCAATACAAACACTGTCATTCAAGATCAAATCG
CTAAAAACATCATCATCAAACAGTTCCCTCCGCATGTCCCCCTGTCCGGT
ATCATCAAAAACAACGGACACGCCCCAACTTTTTCTTTAACCGAGGGCGT
TGCTGTGCGGTTATCGGGCGGAACATTGTTAAATGATTTTTACATGAAGC
AGATTCACTTTCATTTTGGATGCACTGAGAAAACAGGATCGGAACATTTC
ATCGACGGTGTACAATTCCCGCTCGAGATGCATTTGGTGTTTTGGGATAA
TTCCACTTACTCGACATTTTCACAAGCAGCCAAAGGAGACAATGGAATCG
CCGTTGTTGCCATTCTCTTTCAACGAGAAGACATAACAGGAAGTCAACCG
GAAGATTTGACGCCCCTTCATCAAATTACAGGATTGTTGAAAAACATCAG
AGCAGAAGGTGAAGGGTTGGTGATAACGGAAGACTTTGGTGTACAATTCG
ATCAATTGGTTCCTTCCATCAAAGACAGGCAAAAAGCAGACCGAGTGTTT
ATATACAGTGGTTCGTTGTCCACCCCGGGTTGCTACGAGTCAGTCACGTG
GATGGTTTACGCCAACACTCCCCACGTAACAAATAAACAGTTGCAAGAAT
TTCGGCAGTTGCGATCGACCAAAGTGAATCGAGAAGGGACGATGTGTGAT
AACTACCGTCCGCTACAAAAGACGTTCGGACGGAAAATTTATTCCAATAT
CATATAAACAATTGATAATTACAATAcaataaacataaacaaatgaTTAG
AAAAAACTGGCAACAAATATAATACCAAATTGGAAAATGAAACGTCGTGT
GTGGAGTAAAGAATTATTAATATGTTGACAATACTGTGAAAGCATAACCC
ATAAAATTTGGAACGTTGGGCGAAGAAATTTGCTGAAAAATTCATCAACG
TATCAACTGCTAAACCGTGTTactattttcatgatttttcattGGTCCGA
GCATCTTAAAATAGATTTCACAGAGTTTTTTGTGTACCGGGCAGCCagaa
tctaacatttttgtAAATCTTCGATGCATATTCTGTAGTTTACGATAATA
TTccatatacgttttgaaaatttccgatCTTATTTCAAGTTTGTACATAA
ATAATACATTTtagtttttaatatttcgtATTTTCCTAGAaatgtataaa
aataaattggTAATAACTTTAAGCCACTTATCTCATCAAAGTCCCAGCCT
TTGTTTCAATACTCCAATCTGAAACAAGAAGAACCGTTtcctttttgtta
aaaaaaatacctaatttcatTTCCCTAAACCAAGATTCAGTTTGCCAAAG
CTAAGATAGCTGAATTTCCTTAAATTTATCATATACTTTACGGGAAgcaa
attttggcgggaaga
Run BLAST on NCBI

protein sequence of TCONS_00001103-protein

>TCONS_00001103-protein ID=TCONS_00001103-protein|Name=TCONS_00001103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=706bp
MAGDFVFIFGLFAVVVFSPFNDGRQLSPSVSVQPTTENWLELPVKSLANI
VSSPSLTKSANTVVGNKKSFVRKESLILSNPKPSNEKVDHLLSFAHQNKP
ENGQALASENEYKNSIDSVNYVEDQQERMNEDRLLEQQDMLSYMPTEGSS
HKMKNSSFNDVVSGTGRSSFLHYAKLSSPHKNHVVNKTYFTPVTQREKGL
KRFEELFLKNGAQYDGVNIYKETPKDAEEFENLDTAPILTDGTKRDDSNS
QMEAEMEALQLKMEKLKKKMNKSKNGRQSWVNKAFGKLSHGHKIDSSDMK
NLMYKLKTQVMSEDDSIDGADVEKTESSFDEEKSTSEAPVDDKLKILLAE
QEKIPPPPSSKEKRPPKDDEELITVKPTAKPGDELPPPADIKPPKPPSIE
KRPKPGDEQPPQTLVDTLPPVTSGSTMFFSYDDGTPNGPSSWQRLNGRWT
CEGRKQSPININTNTVIQDQIAKNIIIKQFPPHVPLSGIIKNNGHAPTFS
LTEGVAVRLSGGTLLNDFYMKQIHFHFGCTEKTGSEHFIDGVQFPLEMHL
VFWDNSTYSTFSQAAKGDNGIAVVAILFQREDITGSQPEDLTPLHQITGL
LKNIRAEGEGLVITEDFGVQFDQLVPSIKDRQKADRVFIYSGSLSTPGCY
ESVTWMVYANTPHVTNKQLQEFRQLRSTKVNREGTMCDNYRPLQKTFGRK
IYSNII
Run BLAST on NCBI

transcript from alignment at sc0000007:257676..261909-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001103 ID=TCONS_00001103|Name=TCONS_00001103|organism=Clytia hemisphaerica|type=transcript|length=4234bp|location=Sequence derived from alignment at sc0000007:257676..261909- (Clytia hemisphaerica)
GATCTCCTTCTTCAAACAATGCTCAACGAAGTGTAAACCCATCTTCTGCA
CAATTCAATTAGTCTTCTCTTTGTACTTTGTACTGCATATTCTTCTTTGA
GACACAAACAAATCTGATATCCGGATTTTCAACTGATTGTTTGTTTTGTT
TGCTGTCTGCCTATCTATGACGTCACAGATAATGTGATGGCTGGCGATTT
TGTATTTATCTTCGGTCTATTTGCTGTTGTTGTTTTCTCGCCATTTAACG
ATGGCCGGCAATTATCGCCTTCAGTAAGTGTACAGCCTACTACGGAAAAT
TGGTTGGAATTGCCAGTTAAAAGTTTGGCGAACATTGTTTCATCACCTTC
ACTAACAAAAAGTGCAAATACTGTTGTTGGGAATAAAAAATCGTTCGTTC
GAAAGGAGTCCCTGATTCTCAGTAATCCGAAGCCAAGCAATGAGAAAGTC
GATCATTTGTTGTCATTTGCTCATCAAAACAAACCTGAGAATGGTCAGGC
GTTAGCCTCAGAAAACGAATATAAAAATTCAATAGACAGTGTGAATTATG
TTGAAGACCAACAAGAGAGGATGAACGAGGATAGACTACTTGAGCAACAG
GATATGCTCTCATACATGCCCACTGAGGGTTCTTCGCACAAAATGAAAAA
TTCTTCTTTTAATGATGTCGTTTCTGGTACTGGGAGAAGCTCATTTCTTC
ATTATGCGAAACTCTCATCACCTCATAAAAACCATGTAGTGAACAAGACT
TATTTCACTCCTGTGACCCAGCGAGAAAAAGGTCTAAAGAGATTTGAAGA
ATTGTTTTTGAAGAATGGAGCACAGTACGATGGAGTGAACATTTATAAAG
AAACGCCGAAAGACGCGGAAGAGTTTGAGAATCTCGATACTGCTCCCATA
TTAACCGATGGAACGAAAAGAGATGATAGTAACAGTCAGATGGAAGCCGA
AATGGAAGCTCTCCAGCTCAAAATGGAAAAGTTGAAGAAGAAAATGAACA
AATCGAAAAACGGTCGTCAAAGTTGGGTCAATAAAGCATTTGGTAAATTA
AGCCATGGCCATAAAATCGATTCAAGTGACATGAAAAATTTGATGTACAA
ATTGAAGACGCAAGTCATGTCAGAAGACGATTCTATTGATGGAGCGGATG
TCGAGAAAACAGAATCCTCTTTCGATGAAGAAAAATCCACTTCGGAAGCA
CCAGTTGACGACAAACTGAAAATTCTTCTGGCTGAGCAAGAGAAGATTCC
GCCACCGCCATCCAGCAAAGAAAAACGCCCACCCAAAGATGATGAGGAAC
TAATCACCGTCAAACCAACTGCAAAACCAGGAGATGAGTTACCACCACCA
GCTGATATCAAGCCACCCAAACCGCCCAGTATTGAGAAAAGACCGAAACC
AGGCGATGAACAACCACCCCAAACGCTGGTGGACACTCTTCCACCGGTCA
CCAGTGGCTCCACCATGTTCTTCTCGTATGATGATGGCACCCCTAATGGT
ATGACGATACCTAAAACCTTTTTAGAGACTCGATTCTGGAACTAAAAAGT
CGACTTTTTAGTAACTACAGATTACAGTCCAACCTGTTTCCACCATTTCT
CTTTCGAGGAGATGATACTGTTATGGGCTCCCTGATAAGCTCTTTACTAA
CGTATTTTAATGATCTCTTATACGTTTCAGGTCCATCATCATGGCAAAGG
TTGAATGGTCGTTGGACATGTGAAGGACGAAAGCAATCACCAATCAACAT
CAATACAAACACTGTCATTCAAGATCAAATCGCTAAAAACATCATCATCA
AACAGTTCCCTCCGCATGTCCCCCTGTCCGGTATCATCAAAAACAACGGA
CACGCCCCAACTTTTTCTTTAACCGAGGGCGTTGCTGTGCGGTTATCGGG
CGGAACATTGTTAAATGATTTTTACATGAAGCAGATTCACTTTCATTTTG
GATGCACTGAGAAAACAGGATCGGAACATTTCATCGACGGTGTACAATTC
CCGCTCGAGGTTTGTCTTTCTTTGACCATTTTGGGATATCATGGGTGATT
AAAGAACTCTTGCTTGATTTGTCTCTCTTTCCTTTAACGCTTAACGCCCT
AGAATCTTCACAAAAATAAAAAGCATTGTACAATGCACTTTCGAATCTAC
GAAATTGGGCAATACACCCCTGTCTTAGTGACCTGGTGAGAATATTTTGA
AGGAGCTGGATGCCCATTGAAATGCAAATCTTGATGTTTTGAATGAAAAT
CTGAAATTTTCATGTGTGATTGTTTCCCACCAGGATGATTGTTCCCGCCT
ACTCTAATCACAAGTATCATCTTACCTATAATAAAAGTCTTCTGTTTTTC
AGATGCATTTGGTGTTTTGGGATAATTCCACTTACTCGACATTTTCACAA
GCAGCCAAAGGAGACAATGGAATCGCCGTTGTTGCCATTCTCTTTCAAGT
AAGGGAGTATTATATTTATAAACGTTTTCTTGATATAACAACACATTTCA
AACCTGACAGTTCCAAAAGGGATGATTTCTCCTTATAGGGAGGGCTTTCC
TTACTAAATAAACAAGGATGGATCATCACATCAAAATATAAACCATCGAT
GTATCTTTTACTTAGCGAGAAGACATAACAGGAAGTCAACCGGAAGATTT
GACGCCCCTTCATCAAATTACAGGATTGTTGAAAAACATCAGAGCAGAAG
GTCAGTGTTTTGAAGAATCAATTGTTTTTGTGCGTTCTAGGTGGTGAAAT
GTTCAATACAAGGTTGNAAGGTCAGTGTTTTGAAGAATCAATTGTTTTTG
TGCGTTCTAGGTGGTGAAATGTTCAATACAAGGTTGTGGGTTGACCCGAC
CGGGTCAAACCGAAGATTCTCAAATTGTACTTGATGCCTCTCTGCTTGAT
GCTCAGCAATTAAGAGAAAGATCAAGGATAAGTGGAGCAATCCAGGGAGA
AAGAGTTGCGCCCTCCCCTACCTTCGGGTAAATAGCTATCGAAAAAGGAG
CCTTCGGGTCGCCAACGACTGCGGCCGAGAACTTACTCTGATGTAATGTT
CATCCTGAAAACTGTTGCATGTATATTTATAACTTGTCTTATAGGTGAAG
GGTTGGTGATAACGGAAGACTTTGGTGTACAATTCGATCAATTGGTTCCT
TCCATCAAAGACAGGCAAAAAGCAGACCGAGTGTTTATATACAGTGGTTC
GTTGTCCACCCCGGGTTGCTACGAGTCAGTCACGTGGATGGTTTACGCCA
ACACTCCCCACGTAACAAATAAACAGGTATGGAAAGTTAACAACTGATAA
CCAATTATTTTTTCAAAAAGCTTCCTTGGGAAAATGCGTAACTTTGCTCA
AAGAAACAAAATTCTAATTAAATAATTCTCAGGCCAAAGGAAATCAGTGC
AAGTTTAGTTTTGAAAATTAATTCGCAATTTACAGTTTGGACTTATTTCA
TTCTTTCAGTTGCAAGAATTTCGGCAGTTGCGATCGACCAAAGTGAATCG
AGAAGGGACGATGTGTGATAACTACCGTCCGCTACAAAAGACGTTCGGAC
GGAAAATTTATTCCAATATCATATAAACAATTGATAATTACAATACAATA
AACATAAACAAATGATTAGAAAAAACTGGCAACAAATATAATACCAAATT
GGAAAATGAAACGTCGTGTGTGGAGTAAAGAATTATTAATATGTTGACAA
TACTGTGAAAGCATAACCCATAAAATTTGGAACGTTGGGCGAAGAAATTT
GCTGAAAAATTCATCAACGTATCAACTGCTAAACCGTGTTACTATTTTCA
TGATTTTTCATTGGTCCGAGCATCTTAAAATAGATTTCACAGAGTTTTTT
GTGTACCGGGCAGCCAGAATCTAACATTTTTGTAAATCTTCGATGCATAT
TCTGTAGTTTACGATAATATTCCATATACGTTTTGAAAATTTCCGATCTT
ATTTCAAGTTTGTACATAAATAATACATTTTAGTTTTTAATATTTCGTAT
TTTCCTAGAAATGTATAAAAATAAATTGGTAATAACTTTAAGCCACTTAT
CTCATCAAAGTCCCAGCCTTTGTTTCAATACTCCAATCTGAAACAAGAAG
AACCGTTTCCTTTTTGTTAAAAAAAATACCTAATTTCATTTCCCTAAACC
AAGATTCAGTTTGCCAAAGCTAAGATAGCTGAATTTCCTTAAATTTATCA
TATACTTTACGGGAAGCAAATTTTGGCGGGAAGA

Coding sequence (CDS) from alignment at sc0000007:257676..261909-

>TCONS_00001103 ID=TCONS_00001103|Name=TCONS_00001103|organism=Clytia hemisphaerica|type=CDS|length=2121bp|location=Sequence derived from alignment at sc0000007:257676..261909- (Clytia hemisphaerica)
ATGGCTGGCGATTTTGTATTTATCTTCGGTCTATTTGCTGTTGTTGTTTT
CTCGCCATTTAACGATGGCCGGCAATTATCGCCTTCAGTAAGTGTACAGC
CTACTACGGAAAATTGGTTGGAATTGCCAGTTAAAAGTTTGGCGAACATT
GTTTCATCACCTTCACTAACAAAAAGTGCAAATACTGTTGTTGGGAATAA
AAAATCGTTCGTTCGAAAGGAGTCCCTGATTCTCAGTAATCCGAAGCCAA
GCAATGAGAAAGTCGATCATTTGTTGTCATTTGCTCATCAAAACAAACCT
GAGAATGGTCAGGCGTTAGCCTCAGAAAACGAATATAAAAATTCAATAGA
CAGTGTGAATTATGTTGAAGACCAACAAGAGAGGATGAACGAGGATAGAC
TACTTGAGCAACAGGATATGCTCTCATACATGCCCACTGAGGGTTCTTCG
CACAAAATGAAAAATTCTTCTTTTAATGATGTCGTTTCTGGTACTGGGAG
AAGCTCATTTCTTCATTATGCGAAACTCTCATCACCTCATAAAAACCATG
TAGTGAACAAGACTTATTTCACTCCTGTGACCCAGCGAGAAAAAGGTCTA
AAGAGATTTGAAGAATTGTTTTTGAAGAATGGAGCACAGTACGATGGAGT
GAACATTTATAAAGAAACGCCGAAAGACGCGGAAGAGTTTGAGAATCTCG
ATACTGCTCCCATATTAACCGATGGAACGAAAAGAGATGATAGTAACAGT
CAGATGGAAGCCGAAATGGAAGCTCTCCAGCTCAAAATGGAAAAGTTGAA
GAAGAAAATGAACAAATCGAAAAACGGTCGTCAAAGTTGGGTCAATAAAG
CATTTGGTAAATTAAGCCATGGCCATAAAATCGATTCAAGTGACATGAAA
AATTTGATGTACAAATTGAAGACGCAAGTCATGTCAGAAGACGATTCTAT
TGATGGAGCGGATGTCGAGAAAACAGAATCCTCTTTCGATGAAGAAAAAT
CCACTTCGGAAGCACCAGTTGACGACAAACTGAAAATTCTTCTGGCTGAG
CAAGAGAAGATTCCGCCACCGCCATCCAGCAAAGAAAAACGCCCACCCAA
AGATGATGAGGAACTAATCACCGTCAAACCAACTGCAAAACCAGGAGATG
AGTTACCACCACCAGCTGATATCAAGCCACCCAAACCGCCCAGTATTGAG
AAAAGACCGAAACCAGGCGATGAACAACCACCCCAAACGCTGGTGGACAC
TCTTCCACCGGTCACCAGTGGCTCCACCATGTTCTTCTCGTATGATGATG
GCACCCCTAATGGTCCATCATCATGGCAAAGGTTGAATGGTCGTTGGACA
TGTGAAGGACGAAAGCAATCACCAATCAACATCAATACAAACACTGTCAT
TCAAGATCAAATCGCTAAAAACATCATCATCAAACAGTTCCCTCCGCATG
TCCCCCTGTCCGGTATCATCAAAAACAACGGACACGCCCCAACTTTTTCT
TTAACCGAGGGCGTTGCTGTGCGGTTATCGGGCGGAACATTGTTAAATGA
TTTTTACATGAAGCAGATTCACTTTCATTTTGGATGCACTGAGAAAACAG
GATCGGAACATTTCATCGACGGTGTACAATTCCCGCTCGAGATGCATTTG
GTGTTTTGGGATAATTCCACTTACTCGACATTTTCACAAGCAGCCAAAGG
AGACAATGGAATCGCCGTTGTTGCCATTCTCTTTCAACGAGAAGACATAA
CAGGAAGTCAACCGGAAGATTTGACGCCCCTTCATCAAATTACAGGATTG
TTGAAAAACATCAGAGCAGAAGGTGAAGGGTTGGTGATAACGGAAGACTT
TGGTGTACAATTCGATCAATTGGTTCCTTCCATCAAAGACAGGCAAAAAG
CAGACCGAGTGTTTATATACAGTGGTTCGTTGTCCACCCCGGGTTGCTAC
GAGTCAGTCACGTGGATGGTTTACGCCAACACTCCCCACGTAACAAATAA
ACAGTTGCAAGAATTTCGGCAGTTGCGATCGACCAAAGTGAATCGAGAAG
GGACGATGTGTGATAACTACCGTCCGCTACAAAAGACGTTCGGACGGAAA
ATTTATTCCAATATCATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000620XLOC_000620Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001103-proteinTCONS_00001103-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001103-exon-sc0000007-1575043694:260412..261909TCONS_00001103-exon-sc0000007-1575043694:260412..261909Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1575043694:259901..260229TCONS_00001103-exon-sc0000007-1575043694:259901..260229Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1575043694:259462..259557TCONS_00001103-exon-sc0000007-1575043694:259462..259557Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1575043694:259210..259294TCONS_00001103-exon-sc0000007-1575043694:259210..259294Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1575043694:258634..258815TCONS_00001103-exon-sc0000007-1575043694:258634..258815Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1575043694:257676..258450TCONS_00001103-exon-sc0000007-1575043694:257676..258450Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1510915933:260412..261909TCONS_00001103-exon-sc0000007-1510915933:260412..261909Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1510915933:259901..260229TCONS_00001103-exon-sc0000007-1510915933:259901..260229Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1510915933:259462..259557TCONS_00001103-exon-sc0000007-1510915933:259462..259557Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1510915933:259210..259294TCONS_00001103-exon-sc0000007-1510915933:259210..259294Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1510915933:258634..258815TCONS_00001103-exon-sc0000007-1510915933:258634..258815Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1510915933:257676..258450TCONS_00001103-exon-sc0000007-1510915933:257676..258450Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1491911889:260412..261909TCONS_00001103-exon-sc0000007-1491911889:260412..261909Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1491911889:259901..260229TCONS_00001103-exon-sc0000007-1491911889:259901..260229Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1491911889:259462..259557TCONS_00001103-exon-sc0000007-1491911889:259462..259557Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1491911889:259210..259294TCONS_00001103-exon-sc0000007-1491911889:259210..259294Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1491911889:258634..258815TCONS_00001103-exon-sc0000007-1491911889:258634..258815Clytia hemisphaericaexon
TCONS_00001103-exon-sc0000007-1491911889:257676..258450TCONS_00001103-exon-sc0000007-1491911889:257676..258450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:257676..261909 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.107718	0.0260713	0.0152391	0.0296639	0.410756	0.246646	1.1387	1.16399	0.34898	0.196076	0.325844	1.45769	5.43297	4.40274	3.47658	9.25663	1.92945	2.6231	0.114104	0.0738798	1.89409	1.14161	1.12309	1.20466	2.05247	2.83524	0.335281	0.139725	0.0750406	0.10783
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001148Carbonic_anhydrase_a
IPR018338Carbonic_anhydrase_a-class_CS
Vocabulary: Molecular Function
TermDefinition
GO:0004089carbonate dehydratase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006730one-carbon metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006730 one-carbon metabolic process
molecular_function GO:0004089 carbonate dehydratase activity
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00001103 vs. Swiss-Prot (Human)
Match: CAH13 (Carbonic anhydrase 13 OS=Homo sapiens GN=CA13 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.879e-32
Identity = 89/269 (33.09%), Postives = 134/269 (49.81%), Query Frame = 1 
Query: 1495 NGPSSWQRLNGRWTCEGRKQSPININTNTVIQDQIAKNIIIKQFPPHVPLSGIIKNNGHAPT--FSLTEGVAVRLSGGTLLNDFYMKQIHFHFGCTEKTGSEHFIDGVQFPLEMHLVFWDNSTYSTFSQAAKGDNGIAVVAILFQREDITGSQPEDLTPLHQITGLLKNIRAEGEGLVITEDFGVQFD--QLVPSIKDRQKADRVFIYSGSLSTPGCYESVTWMVYANTPHVTNKQLQEFRQLRSTKVNREGT-MCDNYRPLQKTFGRK 2286
            NGP  W+        +G +QSPI I T  V  D   + + IK  P     + II N+GH+    F  TE  +V L GG L   + ++Q+H H+G  +  GSEH +DGV +  E+H+V W++  Y +F +AA   +G+AV+ +  Q         E  + L +IT  L +I+ +G+    T      FD   L+P   D       + Y GSL+ P   ESVTW+V     +++++QL +FR L  T        +  N+RP Q   GRK
Sbjct:   12 NGPIHWKEFFP--IADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSS---AKIISNSGHSFNVDFDDTENKSV-LRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWNSDKYPSFVEAAHEPDGLAVLGVFLQIG-------EPNSQLQKITDTLDSIKEKGKQTRFT-----NFDLLSLLPPSWD------YWTYPGSLTVPPLLESVTWIVLKQPINISSQQLAKFRSLLCTAEGEAAAFLVSNHRPPQPLKGRK 256
The following BLAST results are available for this feature:
BLAST of TCONS_00001103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAH139.879e-3233.09Carbonic anhydrase 13 OS=Homo sapiens GN=CA13 PE=1... [more]
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