TCONS_00001107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001107
Unique NameTCONS_00001107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1934

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001107 ID=TCONS_00001107|Name=TCONS_00001107|organism=Clytia hemisphaerica|type=transcript|length=1934bp
CCAAAGGTGGTCAACAATCGAGGAGATATTGAGTGGCCCCCAAGATCACC
CAATCTCACTGtatgtgatttctttttgtggGGTTACATGAAACAACAGA
TCTCGCAGCAACACTAAAATTCGCATTCCCAGACCCTTGATAAATTGAAA
GCTTCAATCAGAAATGTTCCAGCTAACCTCAACAAATGACTCCTCATAAT
TTAATTTTATACTTTCTTTTTCCAATGCAAAATGATCGATTCTTTCAGAT
TCTTTAATAACAGTtgatagaactcgagaaaattcacttcaaagtgGCAC
AGAAAACTAGGTATGCCCACACCCACTGTTGTTGAAGCTAATGCCGTCAT
AAAAAATAGGGAAGATGTGGGATGGTTGTGTTAAGGGACTTGGAAAGCGT
TTTAAATAGatcaatttacaaaatttccatATTAAAGCTGTTGACGGGAT
CAGAGATATATAGCTATACTAGACTTTTAAGAAAGACTCAATAGGAAAGC
CTAGGTCGTGGTTTTCAGGAATGGACTTTGTTAAAGAATAGACATTTGAG
AAGCATCTCCATATacaatttataattgatttTAGATTcataagttttga
aaaattttagaaaaaaaaactgagCATGGCATTCTtgcaaaacattttta
aaagagGAATCAGTACCACTCTCAGGTCTCAAGCTTTCAATCAACCAACA
ACTTCAAAAGAAATGCTGAGAGCTGGAGGGATTGCATCCATGTATAGACT
TCCGATCCACAAGAATACTGAAGatcttgatgtttgttttgttggtATTC
CTTTGGATGTTGGTGCCAGCAACAGAACTGGCACAAGATTTGGCCCAAGA
GCTATTCGAACTGAATCAGTAATGGTACGCTCAATAAACAACGATACAGg
tgcTCGCCCATTTGAAAGCTTTCAAGTTGGAGATGTTGGAGATGTCTCCT
TCAATCAGTATAATTTAGAAGAAGCTTGTGGACAGATAAAAGTTCAGTAT
GATGAACTCATAAAAAATGGGTGTATTCCACTTACCATGGGAGGAGATCA
CACTTTGACTTACCCCATTCTCCAAGCCATACATGAGAAATATGGTAAAG
TATGTCTGGTTCACATCGATGCACATACTGATTTATATGGACCATTTTAT
GGTAGCAAAATATGGCATGGAAATCCTTTCGGTAATGCTGTTCAGGAGGG
TTTGTTAGATTGCAACCGCACTGTTCAAATTGGTCTCCGTGGTTCTGGAT
ATGGTGATGACTATGATGTTCCACGTAACCTTGGATTTCGAGTAGTTCCA
GCGAAAGATTGTTGGTGGAAATCAATGACTCCATTGATGGAGGAAGTTCG
TGAAATGATTGGAGATCGACCAGTTTATCTGTCTTTTGATATAGATTCAC
TCGATCCTGCGTATGCTCCTGGGACAGgtaCACCAGAGATAGGAGGATTA
ACATCAGTTCAAGCCATAGAAATCATCAGAGGGTGCAAAGGATTGAATAT
TGTTGGTGCTGATTGTGTTGAGGTATCGCCACCTTACGATGTAGGAGGAA
TGACGTCTATTCACGCTGCAAACTTGTTGTTTGAAATGCTTTGCATTCTA
CCAGGTGTCAAGCACAACGAATGATCGATAAGTGAATTATAAACAATGGG
GAACAAATGCACCATTTTAGAgaatatctttcaaattttatatttttttc
atagtcatgggaaatattttttttcaaaacagaaatttgaattattagaa
atttttatacattttataCATTTATACAGATTGtaaattttaatcatttt
tgaagCCGAAATATAGAAATTCATACACACTTATTTGatcttaaggtggt
agtctacccaaaaataaaaaatcatcgaaaaaattgtcgaattctggttt
ttgggtgttttgagatccttaggtctttctgaAC
Run BLAST on NCBI

protein sequence of TCONS_00001107-protein

>TCONS_00001107-protein ID=TCONS_00001107-protein|Name=TCONS_00001107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MAFLQNIFKRGISTTLRSQAFNQPTTSKEMLRAGGIASMYRLPIHKNTED
LDVCFVGIPLDVGASNRTGTRFGPRAIRTESVMVRSINNDTGARPFESFQ
VGDVGDVSFNQYNLEEACGQIKVQYDELIKNGCIPLTMGGDHTLTYPILQ
AIHEKYGKVCLVHIDAHTDLYGPFYGSKIWHGNPFGNAVQEGLLDCNRTV
QIGLRGSGYGDDYDVPRNLGFRVVPAKDCWWKSMTPLMEEVREMIGDRPV
YLSFDIDSLDPAYAPGTGTPEIGGLTSVQAIEIIRGCKGLNIVGADCVEV
SPPYDVGGMTSIHAANLLFEMLCILPGVKHNE
Run BLAST on NCBI

transcript from alignment at sc0000007:304337..307579-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001107 ID=TCONS_00001107|Name=TCONS_00001107|organism=Clytia hemisphaerica|type=transcript|length=3243bp|location=Sequence derived from alignment at sc0000007:304337..307579- (Clytia hemisphaerica)
CCAAAGGTGGTCAACAATCGAGGAGATATTGAGTGGCCCCCAAGATCACC
CAATCTCACTGTATGTGATTTCTTTTTGTGGGGTTACATGAAACAACAGA
TCTCGCAGCAACACTAAAATTCGCATTCCCAGACCCTTGATAAATTGAAA
GCTTCAATCAGAAATGTTCCAGCTAACCTCAACAAATGACTCCTCATAAT
TTAATTTTATACTTTCTTTTTCCAATGCAAAATGATCGATTCTTTCAGAT
TCTTTAATAACAGTTGATAGAACTCGAGAAAATTCACTTCAAAGTGGCAC
AGAAAACTAGGTATGCCCACACCCACTGTTGTTGAAGCTAATGCCGTCAT
AAAAAATAGGGAAGATGTGGGATGGTTGTGTTAAGGGACTTGGAAAGCGT
TTTAAATAGATCAATTTACAAAATTTCCATATTAAAGCTGTTGACGGGAT
CAGAGATATATAGCTATACTAGACTTTTAAGAAAGACTCAATAGGAAAGC
CTAGGTCGTGGTTTTCAGGAATGGACTTTGTTAAAGAATAGACATTTGAG
AAGCATCTCCATATACAATTTATAATTGATTTTAGATTCATAAGTTTTGA
AAAATTTTAGAAAAAAAAACTGAGCATGGCATTCTTGCAAAACATTTTTA
AAAGAGGAATCAGTACCACTCTCAGGTCTCAAGCTTTCAATCAACCAACA
ACTTCAAAAGAAATGCTGAGAGCTGGAGGGATTGCATCCATGTATAGACT
TCCGATCCACAAGAATACTGAAGGTAGAAAGGTTTTTATATATATCCTGA
AAATAAGTATAATAAATGAATTTGTTTTTCTTTTTGAGTGCTATTACAAC
CATGTAAAATTTCCCTTCAAACTACTATGATACATTCTCAACATATAACT
CTTTTTTTATTTTTCAAGATCTTGATGTTTGTTTTGTTGGTATTCCTTTG
GATGTTGGTGCCAGCAACAGAACTGGCACAAGATTTGGCCCAAGAGCTAT
TCGAACTGAATCAGTAATGGTACGCTCAATAAACAACGATACAGGTAAAG
TGTGCATATTTATAATTATGATACTGTATTTAGAAATCTTTTAAAAAAAT
GATTGCTAACATATTGCTAGCTATCCAACAATATTCCAAAATAATATAAA
TCTTCATTGATACTGCTTTTTTTTTTTTAGGTGCTCGCCCATTTGAAAGC
TTTCAAGTTGGAGATGTTGGAGATGTCTCCTTCAATCAGTATAATTTAGA
AGAAGCTTGTGGACAGATAAAAGTTCAGTATGATGAACTCATAAAAAATG
GGTGTATTCCACTTACCATGGGAGGAGATCACACTTTGACTTACCCCATT
CTCCAAGCCATACATGTAAGTGCACGAAAATCAAACATACAGACTTCATA
CAAATTCGAAAAGGATTGCTAAAAAAGAAATAACCTGTAATGAGATAGGG
CGTTCAGAAAATTGTACCTCTTCTCTCTATATACTACAGGAGAAATATGG
TAAAGTATGTCTGGTTCACATCGATGCACATACTGATTTATATGGACCAT
TTTATGGTAGCAAAATATGGCATGGAAATCCTTTCGGTAATGCTGTTCAG
GAGGGTTTGTTAGATTGCAACCGCACTGTTCAAATTGGTCTCCGTGGTTC
TGGATATGGTGATGACTATGATGTTCCACGTAACCTTGTAGGTTTTATAT
TCTATTTTTCATTCTTCTTCTGTTATCAAAAGAACATTTCTTCGTGAATG
AAGACCAGTATTAATTATAACACTTTCAATAAAGTTAGTTGCTAAAGTCT
TACTTATACCATAGAATAGAAAGTAATGTTAAAATGTTGTTTAGGGATTT
CGAGTAGTTCCAGCGAAAGATTGTTGGTGGAAATCAATGACTCCATTGAT
GGAGGAAGTTCGTGAAATGATTGGAGATCGACCAGTTTATCTGTCTTTTG
ATATAGATTCACTCGATCCTGCGTATGCTCCTGGGACAGGTATTTCTTAG
GGCCAAGTAGTCTATTAGCATTTTCTGAAGTATCTATAACCATTGAATTT
CATATATACCCGAACACAATTCTTGCAATGAATAATTATTCCTTATTTCA
TTTTACTGCCTGTTTCCATTTTCACTTTCATAACTATTCACAGCAGCTCC
TTTACTAAAACATGTTATTTATATGTTTATTTATATGTTTATATTTATAT
GTTATATGTTATTGATATTGATATGTTATTATATATTACTCTATGGTAGA
TATGAAGAAGTATCCTACAGCCTTTTACATGTGCAAAGCATGACACTTAT
CATTATCAAAATTATTGGGTAGGGAAGAAAATCGATATGAATATCCGCAG
AATTTTAACCTTTTTAATATATNTATGGTAGATATGAAGGATGTATCCTA
CAGCCTTTAAATTAGTAAATCATGACACTTATCATTATCAAAATTATTGG
GTAGGGAAGAAAATCGATATGAATATCCGCAGAATTTTAATCTTTTTAAT
ATTTTATTTTTATAGGTACACCAGAGATAGGAGGATTAACATCAGTTCAA
GCCATAGAAATCATCAGAGGGTGCAAAGGATTGAATATTGTTGGTGCTGA
TTGTGTTGAGGTATGCTGTCCCTATCATCCCCAATTCTTCTCTATAGTGA
CAAATAATATGGATAGTAGAAGCTATTTGTAACAGCTGCCAAAGATCAGG
AAGTGGAGATAACATCACTAAATTATTTTCTCGTCCGTTTTTAGGTATCG
CCACCTTACGATGTAGGAGGAATGACGTCTATTCACGCTGCAAACTTGTT
GTTTGAAATGCTTTGCATTCTACCAGGTGTCAAGCACAACGAATGATCGA
TAAGTGAATTATAAACAATGGGGAACATATTGTTAGGCGCACGCGTCCCT
AATGACTGCAAAAAGTCATCTCTTTTTAATCGCATACGTCATTTTATTTA
AACGCACAAAAACAAATGCACCATTTTAGAGAATATCTTTCAAATTTTAT
ATTTTTTTCATAGTCATGGGAAATATTTTTTTTCAAAACAGAAATTTGAA
TTATTAGAAATTTTTATACATTTTATACATTTATACAGATTGTAAATTTT
AATCATTTTTGAAGCCGAAATATAGAAATTCATACACACTTATTTGATCT
TAAGGTGGTAGTCTACCCAAAAATAAAAAATCATCGAAAAAATTGTCGAA
TTCTGGTTTTTGGGTGTTTTGAGATCCTTAGGTCTTTCTGAAC

Coding sequence (CDS) from alignment at sc0000007:304337..307579-

>TCONS_00001107 ID=TCONS_00001107|Name=TCONS_00001107|organism=Clytia hemisphaerica|type=CDS|length=999bp|location=Sequence derived from alignment at sc0000007:304337..307579- (Clytia hemisphaerica)
ATGGCATTCTTGCAAAACATTTTTAAAAGAGGAATCAGTACCACTCTCAG
GTCTCAAGCTTTCAATCAACCAACAACTTCAAAAGAAATGCTGAGAGCTG
GAGGGATTGCATCCATGTATAGACTTCCGATCCACAAGAATACTGAAGAT
CTTGATGTTTGTTTTGTTGGTATTCCTTTGGATGTTGGTGCCAGCAACAG
AACTGGCACAAGATTTGGCCCAAGAGCTATTCGAACTGAATCAGTAATGG
TACGCTCAATAAACAACGATACAGGTGCTCGCCCATTTGAAAGCTTTCAA
GTTGGAGATGTTGGAGATGTCTCCTTCAATCAGTATAATTTAGAAGAAGC
TTGTGGACAGATAAAAGTTCAGTATGATGAACTCATAAAAAATGGGTGTA
TTCCACTTACCATGGGAGGAGATCACACTTTGACTTACCCCATTCTCCAA
GCCATACATGAGAAATATGGTAAAGTATGTCTGGTTCACATCGATGCACA
TACTGATTTATATGGACCATTTTATGGTAGCAAAATATGGCATGGAAATC
CTTTCGGTAATGCTGTTCAGGAGGGTTTGTTAGATTGCAACCGCACTGTT
CAAATTGGTCTCCGTGGTTCTGGATATGGTGATGACTATGATGTTCCACG
TAACCTTGGATTTCGAGTAGTTCCAGCGAAAGATTGTTGGTGGAAATCAA
TGACTCCATTGATGGAGGAAGTTCGTGAAATGATTGGAGATCGACCAGTT
TATCTGTCTTTTGATATAGATTCACTCGATCCTGCGTATGCTCCTGGGAC
AGGTACACCAGAGATAGGAGGATTAACATCAGTTCAAGCCATAGAAATCA
TCAGAGGGTGCAAAGGATTGAATATTGTTGGTGCTGATTGTGTTGAGGTA
TCGCCACCTTACGATGTAGGAGGAATGACGTCTATTCACGCTGCAAACTT
GTTGTTTGAAATGCTTTGCATTCTACCAGGTGTCAAGCACAACGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000624XLOC_000624Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001107-proteinTCONS_00001107-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001107-exon-sc0000007-1575043694:306807..307579TCONS_00001107-exon-sc0000007-1575043694:306807..307579Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:306536..306661TCONS_00001107-exon-sc0000007-1575043694:306536..306661Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:306215..306399TCONS_00001107-exon-sc0000007-1575043694:306215..306399Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:305893..306090TCONS_00001107-exon-sc0000007-1575043694:305893..306090Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:305591..305735TCONS_00001107-exon-sc0000007-1575043694:305591..305735Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:304970..305064TCONS_00001107-exon-sc0000007-1575043694:304970..305064Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:304704..304835TCONS_00001107-exon-sc0000007-1575043694:304704..304835Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:304337..304616TCONS_00001107-exon-sc0000007-1575043694:304337..304616Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:306807..307579TCONS_00001107-exon-sc0000007-1510915933:306807..307579Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:306536..306661TCONS_00001107-exon-sc0000007-1510915933:306536..306661Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:306215..306399TCONS_00001107-exon-sc0000007-1510915933:306215..306399Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:305893..306090TCONS_00001107-exon-sc0000007-1510915933:305893..306090Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:305591..305735TCONS_00001107-exon-sc0000007-1510915933:305591..305735Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:304970..305064TCONS_00001107-exon-sc0000007-1510915933:304970..305064Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:304704..304835TCONS_00001107-exon-sc0000007-1510915933:304704..304835Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:304337..304616TCONS_00001107-exon-sc0000007-1510915933:304337..304616Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:306807..307579TCONS_00001107-exon-sc0000007-1491911889:306807..307579Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:306536..306661TCONS_00001107-exon-sc0000007-1491911889:306536..306661Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:306215..306399TCONS_00001107-exon-sc0000007-1491911889:306215..306399Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:305893..306090TCONS_00001107-exon-sc0000007-1491911889:305893..306090Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:305591..305735TCONS_00001107-exon-sc0000007-1491911889:305591..305735Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:304970..305064TCONS_00001107-exon-sc0000007-1491911889:304970..305064Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:304704..304835TCONS_00001107-exon-sc0000007-1491911889:304704..304835Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:304337..304616TCONS_00001107-exon-sc0000007-1491911889:304337..304616Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:304337..307579 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.4938	2.33687	3.58825	4.27018	23.6113	16.6041	22.4994	26.7977	36.8982	34.246	32.7647	27.1458	38.9136	38.1608	77.3585	86.2795	23.8199	22.5811	23.8247	29.503	10.8697	9.67773	17.7141	15.9115	8.81059	9.78267	26.1511	21.2437	38.2359	32.0666
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006035Ureohydrolase
IPR005925Agmatinase-rel
IPR020855Ureohydrolase_Mn_BS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0016813hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
molecular_function GO:0046872 metal ion binding
Blast
[Close]
BLAST of TCONS_00001107 vs. Swiss-Prot (Human)
Match: SPEB (Agmatinase, mitochondrial OS=Homo sapiens GN=AGMAT PE=1 SV=2)

HSP 1 Score: 389.423 bits (999), Expect = 1.993e-129
Identity = 183/308 (59.42%), Postives = 232/308 (75.32%), Query Frame = 2 
Query:  689 NQPTTSKEMLRAGGIASMYRLPIHKNTEDLDVCFVGIPLDVGASNRTGTRFGPRAIRTESVMVRSINNDTGARPFESFQVGDVGDVSFNQYNLEEACGQIKVQYDELIKNGCIPLTMGGDHTLTYPILQAIHEKYGKVCLVHIDAHTDLYGPFYGSKIWHGNPFGNAVQEGLLDCNRTVQIGLRGSGYG-DDYDVPRNLGFRVVPAKDCWWKSMTPLMEEVREMIGDRPVYLSFDIDSLDPAYAPGTGTPEIGGLTSVQAIEIIRGCKGLNIVGADCVEVSPPYDVGGMTSIHAANLLFEMLCILPGV 1609
            NQP + + + R  G+ SM RLP+  + E LD  F+G+PLD G SNR G RFGPR IR ESVM+ ++N  TGA PF+S  V D+GDV+ N YNL+++C +I+  Y++++  GCIPLT+GGDHT+TYPILQA+ +K+G V L+H+DAHTD      G K++HG PF   V EGLLDC R VQIG+RGS    D Y   R+ GFRVV A+DCW KS+ PLM EVR+ +G +P+Y+SFDID+LDPAYAPGTGTPEI GLT  QA+EIIRGC+GLN++G D VEVSPPYD+ G T++ AANLLFEMLC LP V
Sbjct:   42 NQPPSPEFVARPVGVCSMMRLPVQTSPEGLDAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLMVADLGDVNVNLYNLQDSCRRIQEAYEKIVAAGCIPLTLGGDHTITYPILQAMAKKHGPVGLLHVDAHTDTTDKALGEKLYHGAPFRRCVDEGLLDCKRVVQIGIRGSSTTLDPYRYNRSQGFRVVLAEDCWMKSLVPLMGEVRQQMGGKPIYISFDIDALDPAYAPGTGTPEIAGLTPSQALEIIRGCQGLNVMGCDLVEVSPPYDLSGNTALLAANLLFEMLCALPKV 349
The following BLAST results are available for this feature:
BLAST of TCONS_00001107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPEB1.993e-12959.42Agmatinase, mitochondrial OS=Homo sapiens GN=AGMAT... [more]
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