TCONS_00001172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001172
Unique NameTCONS_00001172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001172 ID=TCONS_00001172|Name=TCONS_00001172|organism=Clytia hemisphaerica|type=transcript|length=1265bp
TTGAGGTCCTACTATTTTACTTCCAACGAGTAAGTTAGAGGGTTTCAGAA
CTTGTTTGAATGACAATGAAGATAATATTTGTTCTTTTTACTTGCTTCAT
TTATGAAGCATCAACAATACAATTGCCATCAAGTTGTCCAGACCTTCCCT
TCCACGATATTCCAACAGATCACCTGTTCCACAAGAAAGTGAAACCACTG
GTCATCGCACACCGTGGTTTACCCAAGGAATACCAGGAGAACACGTACGA
TGGAATCATCGCTTCACTGGATTCACACGCTGATGGATTCGAATTAGATA
TTTACAAAACAAAAGATGACCAATTAGTCGTCTTTCATGATGACAACACT
ATGCGGATGACAGGTGTAAGCAAGGTGGTGTACAACAGCACTTACCAAGA
ATTACTGGAGCTGAATATCACTGACACCATAGTCAAAGGTGGTAATACGT
ACACGTTTGGTAAGAAGAGAAAGATCCCTTTACTGGAAGACATTTTGAAA
GTCACCTCCAAACATGATATTCTTCACTATCTAGagATGAAACCAAGTGA
ACCATTACGACCGCACGAACTTCAGTTAGCTAAAGATACCGCCCGATTGG
TCGCTCAGATTATTGAGAAAATGGGACTAGTTAAAAAGGCTATCATTGTC
TCTTTCGACTTCCGGAAAGTGAAAGTGGTGAAAGCCATCAACCCTAACAT
CACAGTCGGTACTTTGTTCTCGCAAAAGTTCGCCGACAAACCAAAAAGCC
GATACCTTGAGATGAAAGAGCTCGGGAATTTAGAACAGTGTGTAAAAGAC
GGACCCGAAGATACGTTGGAATTCTTTAAATTCGTTCTTCAGTCTGGGCT
GTTCTTTAAACAAGCTGGCAGTTCGTCTTTTGATTGTGACATCAAGTTGT
ACAACAACCCAAAGTATTTGAATAAAACCCTTCCAACGTTACGCCAGAAC
TACAGTCGTACGGTGAGCACAGGCTTTTACACCATTTACAGCATGGGAAA
AACAGAGGAACAACATCTCATTGATGAACGTAAGGCTCTCCAATTGATCA
AGCAAGGTGGTGGTCAGCGCTTCATTACGGATGACGTTAAACGAGCGCGC
AGCTTGCTGGGAAAAAGCTCTTCTGCAGGAACAATTTTGAAGATGAACTC
TTTTATAatctgtttaaatttttttgtttttcaatttcatttttaactaG
TTACTTTTTTCAGCTGTActgctaaaatttgaaaaataaatttcagccAG
CGATGTGTatttttt
Run BLAST on NCBI

protein sequence of TCONS_00001172-protein

>TCONS_00001172-protein ID=TCONS_00001172-protein|Name=TCONS_00001172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MTMKIIFVLFTCFIYEASTIQLPSSCPDLPFHDIPTDHLFHKKVKPLVIA
HRGLPKEYQENTYDGIIASLDSHADGFELDIYKTKDDQLVVFHDDNTMRM
TGVSKVVYNSTYQELLELNITDTIVKGGNTYTFGKKRKIPLLEDILKVTS
KHDILHYLEMKPSEPLRPHELQLAKDTARLVAQIIEKMGLVKKAIIVSFD
FRKVKVVKAINPNITVGTLFSQKFADKPKSRYLEMKELGNLEQCVKDGPE
DTLEFFKFVLQSGLFFKQAGSSSFDCDIKLYNNPKYLNKTLPTLRQNYSR
TVSTGFYTIYSMGKTEEQHLIDERKALQLIKQGGGQRFITDDVKRARSLL
GKSSSAGTILKMNSFIICLNFFVFQFHF
Run BLAST on NCBI

transcript from alignment at sc0000007:683922..688724-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001172 ID=TCONS_00001172|Name=TCONS_00001172|organism=Clytia hemisphaerica|type=transcript|length=4803bp|location=Sequence derived from alignment at sc0000007:683922..688724- (Clytia hemisphaerica)
TTGAGGTCCTACTATTTTACTTCCAACGAGTAAGTTAGAGGGTTTCAGAA
CTTGTTTGAATGACAATGAAGATAATATTTGTTCTTTTTACTTGCTTCAT
TTATGAAGGTATTATAGTTAGTTTCTAAAATTTCTAACTTAATTAGTTTC
ACGCTAAATTTATTATTTTATTAAACACATGGTTTTCATCTTAAATAAAA
TTTCAACCAAAGTTCTGTATGGTGACCAAGCTCAAGCTACTTATTTGTCC
ATGCAACTTTATATCATTGAAAAGAAAATTGTTTTTTTCATAGCATCAAC
AATACAATTGCCATCAAGTTGTCCAGACCTTCCCTTCCACGATATTCCAA
CAGATCACCTGTTCCACAAGAAAGTGAAACCACTGGTCATCGCACACCGT
GGTTTACCCAAGGAATACCAGGAGAACACGTACGATGGAATCATCGCTTC
ACTGGATTCACACGCTGATGGATTCGAATTAGATATTTACAAAACAAAAG
ATGACCAATTAGTCGTCTTTCATGATGACAACACTATGGTAATTCTGAGC
GTATATGTTTCTTTTTTGTCAAGCAAGTGTCTTCCCCTTTATCAGGCTCG
CATTATACTTAGGTACATTGTTTAGGTACCAAAACTGATCCTGCATATGC
TTATAAACGTTATGCTTATAGAAAAAAACACTATCTAAACAAATAATTGT
TGAATCAGGTAATACGGTAATTTAAAAAGTTTAACTTTTTTTGTTCATAA
ACCACTATAGTGTGAACCCTCCATAATCTTTCTTATCTTGACTGATAATA
GTGGTAGCGGTGTGATCGGACAATCTGTTCAGGGGAACAATACTCTTAAG
GCCGGTGTCCACTTTCGCGCGAAGCGTTATTANCGATATTGCCCTCCGGA
CATTCGTTTCTCCATACAAAACTTGGGAAATTAATGTTTATCTACCGTCC
GATTCTATACCTTTATCGGGAATCTTAATGTCCAAAGAAAACTTAGGAAA
CTTATGGGACATGACTGGTCAAAATCGATTACATTAAAGCATAATGGATA
CTATCCGTGGATATCTGAGATAAAGGTTTTTAAACCATTTGCTAAAATCC
TTAGAAATGGTTTAATCGGCCATCATAGACTTTCTCCCAAATTCTTGCCT
GTATCTTACACGTATAACAAAAGAGGTCCTAGTCTATATAAAACACTAGA
TAGAGCTTCTGGTCAAAATACTTCAACATTTAAAACAAGTGTCTTCTACT
GTGGTCAAATTTTACCAAAGATGGCGTATTATTTTGCTTCCCTTTTCGTG
GCTAAGGAAAGATAGAAATGTTCTATCAAGTGTTTTATATAAGATATCTG
TGAGAATAGCCCGTTCATCGATATAATGAATTCTATTTTATTTCTAGATG
ATGAGTATGACCCATTTAGACGATACCAATCGAGTTGAAGAAATAATGAT
GGACTAAAATACCGAACCATGCTGTCTGAAATTTACCGAACAGATAAAAA
AAGAAAGACACGAGGTCTACCATTATTTTGTTTTTACATATTCTTATTTT
GTTTCGTTCGTTGTTAAATGACGTCATTTTTACCATTACATCATTATTTC
ATCATGGTAACATGGCAGACTTTTCACTCTTCCAAAAGAGCAGAACAAAA
TGAGTAAAACACTGCATGTTCTCCATGAAGCATGTTGACGTCACGAAATT
TTCATGTTGATGAATTTTTGATGACGTATAACTTCTTTGTGACCTAACTA
TCAATCATGGGATGAATTTAGACAAATCTACTCAGCTATGCAAAAAATGA
TATTGGGATTATCTACTCAAACAATGGACTCGACTGAATTATTCAGTCTT
AACAAAAAGGAGCCTAATTAATTTTTCAAACTTTTACTTTTCCTTCTGTA
GCGGATGACAGGTGTAAGCAAGGTGGTGTACAACAGCACTTACCAAGAAT
TACTGGAGCTGAATATCACTGACACCATAGTCAAAGGTAAGGCTTCCTCT
ATTTTCATTTTTCATCAAGTTTGTTTTTAATAGAGACTCTATAGGACTTC
GCTGTCCTTTCGAGCAGAAATCTTTTTGCGATATTCACGAATTTGGAACT
TTTTTTTGTGAAAGCATGAGTTTAATATAGACACTGGATAAACAACGTAT
AAAACGGTGGAGAGCGAAGCATTGTCTTTCTTTTGTTTAAGAAAACAATC
GAGGATCTAGCTTTGTCCGCAAAGGACAACTGCCATGGCGGCTCGAAGTT
CTCTGATTTTGAAAAATGATTGATAATCTCATTTCTAAAAAGTCCTATCT
TTATCTTTTTGTACTTTTACTCGCCAAAAATTTTAAAATAAATGCTAAAA
TACTTAACGGATACATGTATTAAATCTGTTGTGACAAAAACATCATTAGA
CAAGAAATATCAAACAAAAGGACTAAAATGACACAGAATTTTAAGTTGGC
GATATTCTGTTAACATCTTTCTGAGAAGAGCTAAGATTGACATATATTAG
ACTTGAGTGTCTTGGCTTCACCGTGGTATGAAAATATTTTTGAGGCCTCG
TGGTGATCGGTGGTTTTATCGAGGTTAAAGTTTGAAAATTTTTGGTGTCA
ACATTCAATTTTTTATACATAGCATGTTTTTCGTATCTTTCTTGCAACTT
GAAACGTCATAACGACACATAATTAACAATTGTTTTGATGCGTTCGCCTC
TCTAAGGAAAACTTAATTTTCATTTGGGAATTTAAATGACTGTGTTAAGA
TGAAAAAAATGATTAAAATATTACAAAAAATCGTTTAATGAAGGAAGGAG
AGTGAACAATAATGTCATTACTGCGGACAAGGCTAGAACATGAGAAATCA
ATGAAAATATAGCTCGTTGTTTATCCAGTGTCTATAATAAATTCTTGGTG
AAAGTCGATACCTGTTTTTATAAATCTTATGAGAAAGTTTGTTTTTTTTA
GTTTCAATCTGAAGGAAAGGAAAATTAAATTTCAACAAGTTTCCTTCCTT
ATCCTACCATCTTAAACTTTAAGGTTCCTCACCAACCGTTTGACATCAAG
CTCGTCCGTTACAAAGATTCATTTATGATTATTTTCACCTCTTTAGGTGG
TAATACGTACACGTTTGGTAAGAAGAGAAAGATCCCTTTACTGGAAGACA
TTTTGAAAGTCACCTCCAAACATGATATTCTTCACTATCTAGAGGTAAAA
ATAATTTCTTGAAAGTTACATGCCCGAAAATTTTCAAAGAAATACCGGGT
GTCCCAGAAAATGTCCCCCTCTTTGAAATGAAATTTCTCGATTTCTATGA
ACTGTTAAAGAATCAATACTTTTGCATTGAAAAAAGGAAGGATAAACTTA
AATTTTGAGGTGGTTAACTACATCAAAAGTTATGACTTAAATGCTAAAAC
ATTACTTTTCAAAAAAGTAAAAAAAAAGGCGAAAAACGAGGTTATTAAAT
CATCATAAAGATATCATAAAGAAATCTTTCTTTTATCAATTTTATTAACG
ATCAAAGTTTTTCTACGATGTCCTTTAATAAGGTGTCTTTATATTAATTC
TCCTTTTGCTTTATTTGTTTAACTTGACGAACTTGCATGGGTATCATCAA
GAGACATGATGCTTTTTCAAGCCCTAAGAATTTCAAAATCTTAGCAACAT
TTTGTGTCTTTGTACAATAAATTTAATACCCTCATTTTCGCCTTTTTTGA
TTTTTCTGAAAAGTAATATTTCAGCATTTAGGCCATAACTTTTGACGCAG
CTAACCAAATTTGACAAACAACGCACTCGAAATTTAAGCTTATCCTTAAT
CTTTCCAATGCAAAAAGATCGATTCTTTAACAGTTCATAGAACTCAGGAA
ATTTCACTTAAAAAAGGGGGACTTTTTTCTGGGACACCCGTTACAATTGT
TATTTAAATGAAATCTGATATAATTTTTTTTTTACTATTTTCTCCGGGTG
TTTCCGATGAAAGATATGAAAGAATTCTTTGCTTACGCTTATCCAGAATA
AATGAAGACTTGTTCTTTCAGATGAAACCAAGTGAACCATTACGACCGCA
CGAACTTCAGTTAGCTAAAGATACCGCCCGATTGGTCGCTCAGATTATTG
AGAAAATGGGACTAGTTAAAAAGGCTATCATTGTCTCTTTCGACTTCCGG
AAAGTGAAAGTGGTGAAAGCCATCAACCCTAACATCACAGTCGGTACTTT
GTTCTCGCAAAAGTTCGCCGACAAACCAAAAAGCCGATACCTTGAGATGA
AAGAGCTCGGGAATTTAGAACAGTGTGTAAAAGACGGACCCGAAGATACG
TTGGAATTCTTTAAATTCGTTCTTCAGTCTGGGCTGTTCTTTAAACAAGC
TGGCAGTTCGTCTTTTGATTGTGACATCAAGTTGTACAACAACCCAAAGT
ATTTGAATAAAACCCTTCCAACGTTACGCCAGAACTACAGTCGTACGGTG
AGCACAGGTNTAATACCCTTCCAACGTTACGCCAAAACTACAGTCGTGCG
GTGAGCACAGGCTTTTACACCATTTACAGCATGGGAAAAACAGAGGAACA
ACATCTCATTGATGAACGTAAGGCTCTCCAATTGATCAAGCAAGGTGGTG
GTCAGCGCTTCATTACGGATGACGTTAAACGAGCGCGCAGCTTGCTGGGA
AAAAGCTCTTCTGCAGGAACAATTTTGAAGATGAACTCTTTTATAATCTG
TTTAAATTTTTTTGTTTTTCAATTTCATTTTTAACTAGTTACTTTTTTCA
GCTGTACTGCTAAAATTTGAAAAATAAATTTCAGCCAGCGATGTGTATTT
TTT

Coding sequence (CDS) from alignment at sc0000007:683922..688724-

>TCONS_00001172 ID=TCONS_00001172|Name=TCONS_00001172|organism=Clytia hemisphaerica|type=CDS|length=1137bp|location=Sequence derived from alignment at sc0000007:683922..688724- (Clytia hemisphaerica)
ATGACAATGAAGATAATATTTGTTCTTTTTACTTGCTTCATTTATGAAGC
ATCAACAATACAATTGCCATCAAGTTGTCCAGACCTTCCCTTCCACGATA
TTCCAACAGATCACCTGTTCCACAAGAAAGTGAAACCACTGGTCATCGCA
CACCGTGGTTTACCCAAGGAATACCAGGAGAACACGTACGATGGAATCAT
CGCTTCACTGGATTCACACGCTGATGGATTCGAATTAGATATTTACAAAA
CAAAAGATGACCAATTAGTCGTCTTTCATGATGACAACACTATGCGGATG
ACAGGTGTAAGCAAGGTGGTGTACAACAGCACTTACCAAGAATTACTGGA
GCTGAATATCACTGACACCATAGTCAAAGGTGGTAATACGTACACGTTTG
GTAAGAAGAGAAAGATCCCTTTACTGGAAGACATTTTGAAAGTCACCTCC
AAACATGATATTCTTCACTATCTAGAGATGAAACCAAGTGAACCATTACG
ACCGCACGAACTTCAGTTAGCTAAAGATACCGCCCGATTGGTCGCTCAGA
TTATTGAGAAAATGGGACTAGTTAAAAAGGCTATCATTGTCTCTTTCGAC
TTCCGGAAAGTGAAAGTGGTGAAAGCCATCAACCCTAACATCACAGTCGG
TACTTTGTTCTCGCAAAAGTTCGCCGACAAACCAAAAAGCCGATACCTTG
AGATGAAAGAGCTCGGGAATTTAGAACAGTGTGTAAAAGACGGACCCGAA
GATACGTTGGAATTCTTTAAATTCGTTCTTCAGTCTGGGCTGTTCTTTAA
ACAAGCTGGCAGTTCGTCTTTTGATTGTGACATCAAGTTGTACAACAACC
CAAAGTATTTGAATAAAACCCTTCCAACGTTACGCCAGAACTACAGTCGT
ACGGTGAGCACAGGCTTTTACACCATTTACAGCATGGGAAAAACAGAGGA
ACAACATCTCATTGATGAACGTAAGGCTCTCCAATTGATCAAGCAAGGTG
GTGGTCAGCGCTTCATTACGGATGACGTTAAACGAGCGCGCAGCTTGCTG
GGAAAAAGCTCTTCTGCAGGAACAATTTTGAAGATGAACTCTTTTATAAT
CTGTTTAAATTTTTTTGTTTTTCAATTTCATTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000636XLOC_000636Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001172-proteinTCONS_00001172-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001172-exon-sc0000007-1575043694:688617..688724TCONS_00001172-exon-sc0000007-1575043694:688617..688724Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1575043694:688187..688431TCONS_00001172-exon-sc0000007-1575043694:688187..688431Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1575043694:686739..686823TCONS_00001172-exon-sc0000007-1575043694:686739..686823Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1575043694:685531..685628TCONS_00001172-exon-sc0000007-1575043694:685531..685628Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1575043694:684268..684703TCONS_00001172-exon-sc0000007-1575043694:684268..684703Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1575043694:683922..684214TCONS_00001172-exon-sc0000007-1575043694:683922..684214Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1510915933:688617..688724TCONS_00001172-exon-sc0000007-1510915933:688617..688724Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1510915933:688187..688431TCONS_00001172-exon-sc0000007-1510915933:688187..688431Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1510915933:686739..686823TCONS_00001172-exon-sc0000007-1510915933:686739..686823Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1510915933:685531..685628TCONS_00001172-exon-sc0000007-1510915933:685531..685628Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1510915933:684268..684703TCONS_00001172-exon-sc0000007-1510915933:684268..684703Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1510915933:683922..684214TCONS_00001172-exon-sc0000007-1510915933:683922..684214Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1491911889:688617..688724TCONS_00001172-exon-sc0000007-1491911889:688617..688724Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1491911889:688187..688431TCONS_00001172-exon-sc0000007-1491911889:688187..688431Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1491911889:686739..686823TCONS_00001172-exon-sc0000007-1491911889:686739..686823Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1491911889:685531..685628TCONS_00001172-exon-sc0000007-1491911889:685531..685628Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1491911889:684268..684703TCONS_00001172-exon-sc0000007-1491911889:684268..684703Clytia hemisphaericaexon
TCONS_00001172-exon-sc0000007-1491911889:683922..684214TCONS_00001172-exon-sc0000007-1491911889:683922..684214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:683922..688724 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.18376	1.44152	1.4455	0.893177	0.770211	0.680235	1.2958	1.01093	1.33062	1.92873	1.94014	4.07225	19.5285	21.1624	21.9196	22.0491	19.2181	22.0245	14.2498	12.2206	28.6174	24.9068	8.05087	7.77468	4.97779	2.89732	1.15168	3.24484	18.4955	16.4505
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017946PLC-like_Pdiesterase_TIM-brl
IPR030395GP_PDE_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008081phosphoric diester hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
molecular_function GO:0008081 phosphoric diester hydrolase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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